Introns (album)
Introns is a remix album by the American rock band LCD Soundsystem, released in March 2006 through DFA as a digital download. ...
Intron
... tRNA introns, group I introns, group II introns, and spliceosomal introns (see below). Introns are rare in Bacteria and Archaea ... and possibly to spliceosomal introns. Nuclear pre-mRNA introns (spliceosomal introns) are characterized by specific intron ... Intron transfer has been hypothesized to result in intron gain when a paralog or pseudogene gains an intron and then transfers ... This intron-containing mRNA is then reverse transcribed and the resulting intron-containing cDNA may then cause intron gain via ...
Database for bacterial group II introns
The Database for Bacterial Group II Introns is a repository of full-length, non-redundant group II introns present in bacterial ... group II intron Candales, Manuel A; Duong Adrian; Hood Keyar S; Li Tony; Neufeld Ryan A E; Sun Runda; McNeil Bonnie A; Wu Li; ... The database is first established in 2002 with roughly 40 introns. In less than 10 years, the database has expanded to 400 ... In addition, it contains a list of intron insertion sites, DNA sequences, protein-encoding sequences, as well as RNA secondary ...
BZIP intron candida
The bZIP intron candida is an unconventional bZIP intron located in the HAC1 mRNA in a subgroup of fungi from Saccharomycetales ... Splicing performed by Ire1 results in excision of a very long intron that was first described in Candida parapsilosis. Hooks KB ... bZIP intron ascomycota-like). The consensus structure consists of two well conserved hairpins with loop regions defining the ... Griffiths-Jones S (2011). "Conserved RNA structures in the non-canonical Hac1/Xbp1 intron". RNA Biol. 8 (4): 552-556. doi: ...
TRNA-intron endonuclease
tRNA-intron endonucleases identify introns along pre-tRNAs and carry out the proper excision mechanism to remove those introns ... tRNA-intron lyase (EC 4.6.1.16, tRNA intron endonuclease, transfer ribonucleate intron endoribonuclease, tRNA splicing ... and an intron with a 2',3'-cyclic phosphate and a 5'-hydroxyl terminus. The use of tRNA-intron endonuclease in pre-tRNA intron ... Splicing on both the 3' and 5' ends of the intron. tRNA-intron lyase requires a level of specificity to the splice site on the ...
Small t intron
The small T intron is an intron, that is used in some plasmid vectors, in order to induce gene expression in mammalian cells. ... The function of this intron in the vectors is unknown, but it is theorized that it might be involved in splicing or translation ... Hunt AG, Mogen BD, Chu NM, Chua NH (1991). "The SV40 small t intron is accurately and efficiently spliced in tobacco cells". ... Huang MT, Gorman CM (1990). "The simian virus 40 small-t intron, present in many common expression vectors, leads to aberrant ...
Intron Depot 1
One feature of Intron Depot 1 is that all of the works are presented with a small aside from Shirow as to his thoughts on them ... Intron Depot 1 in two spots in particular is quite graphic. One panel involves a graphic drawing of a lesbian ménage à trois, ... Intron Depot 1 (イントロンデポ) is a collection of Masamune Shirow's full color works. The volume itself is 148 210 mm x 285 mm pages ... Everything from Appleseed to Orion are well represented in Intron Depot 1, some pictures are reproductions of paintings, others ...
BZIP intron saccharomycetales
BZIP intron animal
The bZIP intron animal is an unconventional bZIP intron in animals located in the mRNA of Xbp1 orthologs. The RNA structure ... Intron is usually 23 or 26 nt long and it is excised by endoribonuclease Ire1 encoded by ERN1 gene in response to ER stress. ... Hooks KB, Griffiths-Jones S (2011). "Conserved RNA structures in the non-canonical Hac1/Xbp1 intron". RNA Biol. 8 (4): 552-556 ...
BZIP intron plant
The bZIP intron plant is an unconventional bZIP intron in plants located in the mRNA of bZIP60 orthologs. The consensus RNA ... Majority of the plants contain also a nested spliceosomal intron located at the base of 3' hairpin. The unconventional splicing ... Hooks KB, Griffiths-Jones S (2011). "Conserved RNA structures in the non-canonical Hac1/Xbp1 intron". RNA Biol. 8 (4): 552-556 ... structure is very similar to the animal variant with short, usually 23 nt intron defined by the loop regions of the conserved ...
Intron-mediated enhancement
If the intron can no longer enhance expression, then inclusion of the intron in the transcript is important, and the intron ... is the ability of an intron sequence to enhance the expression of a gene containing that intron. In particular, the intron must ... The position of an intron within the transcript is also important - the closer an intron is to the start (5' end) of a ... Rose, Alan B. (2004-12-01). "The effect of intron location on intron-mediated enhancement of gene expression in Arabidopsis". ...
U12 intron database
... (U12DB) is a biological database of containing the sequence of eukaryotic introns that are spliced out by a ... These U12-dependent introns are under-represented in genome annotations because they often have non canonical splice sites. ... Release 1 of the database contains 6,397 known and predicted U12-dependent introns across 20 species. Alioto, Tyler S (Jan 2007 ... "U12DB: a database of orthologous U12-type spliceosomal introns". Nucleic Acids Res. England. 35 (Database issue): D110-5. doi: ...
BZIP intron ascomycota
The bZIP intron ascomycota is an unconventional bZIP intron found in some of the Ascomycota fungi, mainly in filamentous fungi ... The unconventional splicing in this group results in excising introns of typical length 20 or 23 nt and it was first described ... Hooks KB, Griffiths-Jones S (2011). "Conserved RNA structures in the non-canonical Hac1/Xbp1 intron". RNA Biol. 8 (4): 552-556 ...
BZIP intron basidiomycota
The bZIP intron basidiomycota is an unconventional bZIP intron found mainly in the Basidiomycota and some Mucoromycotina fungi ... In Basidiomycota, splicing results in excised introns from 20 to 101 nt in length and it was first described in Cryptococcus ... Hooks KB, Griffiths-Jones S (2011). "Conserved RNA structures in the non-canonical Hac1/Xbp1 intron". RNA Biol. 8 (4): 552-556 ...
Group III intron
... is a class of introns found in mRNA genes of chloroplasts in euglenid protists. They have a conventional group ... Group III introns are much shorter than other self-splicing intron classes, ranging from 95 to 110 nucleotides amongst those ... In 1994, discovery of a group III intron with a length of one order of magnitude longer indicated that length alone is not the ... In 1989, David A. Christopher and Richard B. Hallick found a few more examples and proposed the name "Group III introns" to ...
Exon-intron database
The Exon-Intron Database (EID) is a database of spliced mRNA sequences. Alternative splicing Exon Intron Saxonov, S; Daizadeh I ... Fedorov A; Gilbert W (Jan 2000). "EID: the Exon-Intron Database-an exhaustive database of protein-coding intron-containing ...
Group II intron
Database for bacterial group II introns Intron Splice site Nuclear introns Group I intron Group III intron Twintron LtrA ... Protein machinery is required for splicing in vivo, and long-range intron-intron and intron-exon interactions are important for ... The first intron to be identified as distinct from group I was the ai5γ group IIB intron, which was isolated in 1986 from a pre ... In contrast to group I introns, intron excision occurs in the absence of GTP and involves the formation of a lariat, with an A- ...
BZIP intron RNA motif
The consensus intron is very short in Metazoa (20, 23 or 26 nt). However, yeast species have a long (>100 nt) intron in HAC1. ... The bZIP intron RNA motif is an RNA structure guiding splicing of a non-canonical intron from bZIP-containing genes called HAC1 ... Recognition of the intron splice sites is mediated by a base-paired secondary structure of the mRNA that forms at the exon/ ... intron boundaries. Splicing of the bZIP intron is a key regulatory step in the unfolded protein response (UPR). The Ire- ...
Group I catalytic intron
Intron Group I Intron Sequence and Structure Database Splice site Nuclear introns Group II intron Group III intron Twintron ... Both intron-early and intron-late theories have found evidences in explaining the origin of group I introns. Some group I ... Group I introns often have long open reading frames inserted in loop regions. Splicing of group I introns is processed by two ... A small number of group I introns are also found to encode a class of proteins called maturases that facilitate the intron ...
Intron-encoded endonuclease I-SceI
Intron-encoded endonuclease I-Sce I is a homing endonuclease. The enzyme is used in biotechnology as a meganuclease. It ... I-SceI is coded by introns. It is present in the mitochondria of yeast Saccharomyces cerevisiae. New England Biolabs site ...
List of homing endonuclease cutting sites
Jacquier A, Dujon B (June 1985). "An intron-encoded protein is active in a gene conversion process that spreads an intron into ... "Intron 5 alpha of the COXI gene of yeast mitochondrial DNA is a mobile group I intron". Nucleic Acids Res. 20 (15): 4069-76. ... "Structural conservation among three homologous introns of bacteriophage T4 and the group I introns of eukaryotes". PNAS. 85 (4 ... Eddy SR, Gold L (June 1991). "The phage T4 nrdB intron: a deletion mutant of a version found in the wild". Genes Dev. 5 (6): ...
Chloroplast DNA
Notches indicate introns. Chloroplast DNA (cpDNA) is the DNA located in chloroplasts, which are photosynthetic organelles ...
List of restriction enzyme cutting sites
Gene mapping
Notches indicate introns. Gene mapping or genome mapping describes the methods used to identify the location of a gene on a ...
Chloroplast
Notches indicate introns. With few exceptions, most chloroplasts have their entire chloroplast genome combined into a single ... Unlike prokaryotic DNA molecules, chloroplast DNA molecules contain introns (plant mitochondrial DNAs do too, but not human ...
MCM6
... contains 18 introns. There are 2 non overlapping alternative last exons. The transcripts appear to differ by truncation of ... MCM6 produces, by alternative splicing, 3 different transcripts, all with introns, putatively encoding 3 different protein ... located in two of the MCM6 introns, approximately 14 kb and 22 kb upstream of LCT. A substitution of thymine for cytosine in ...
IFNAR1
Bürglin TR, Barnes TM (1992). "Introns in sequence tags". Nature. 357 (6377): 367-8. Bibcode:1992Natur.357..367B. doi:10.1038/ ...
Manyuan Long
De Souza, Sandro J.; Long, Manyuan; Gilbert, Walter (June 1996). "Introns and gene evolution". Genes to Cells. 1 (6): 493-505. ...
Virusoid
... s and viroids have been compared to circular introns due to their size similarity. It has been proposed that virusoids ... In particular, virusoids and viroids exhibit several structural and sequence homologies to the group I introns such as the self ... Dinter-Gottlieb, G (September 1986). "Viroids and virusoids are related to group I introns". Proceedings of the National ... Diener, T. O. (August 1981). "Are viroids escaped introns?". Proceedings of the National Academy of Sciences. 78 (8): 5014-5015 ...
UNC-5
When testing the effect of unc-5::intron::unc-5 transgene on a mislocalization defect in UNC-5 mutant animals at 25 °C a ...