"Nucleotide sequence analysis of DNA. IX. Use of oligonucleotides of defined sequence as primers in DNA sequence analysis". ... Shotgun sequencing is a sequencing method designed for analysis of DNA sequences longer than 1000 base pairs, up to and ... Wu R, Tu CD, Padmanabhan R (1973). "Nucleotide sequence analysis of DNA. XII. The chemical synthesis and sequence analysis of a ... of sequencing attained with modern DNA sequencing technology has been instrumental in the sequencing of complete DNA sequences ...
2004). "Genomic analysis of Bacteroides fragilis reveals extensive DNA inversions regulating cell surface adaptation". PNAS. ... 1995). "Sequence Analysis of the Genome of the Unicellular Cyanobacterium Synechocystis sp. strain PCC6803. I. Sequence ... Feb 2006). "Genome sequence of the cat pathogen, Chlamydophila felis". DNA Res. 13 (1): 15-23. doi:10.1093/dnares/dsi027. PMID ... 2003). "The genome sequence of Blochmannia floridanus: comparative analysis of reduced genomes". Proc. Natl. Acad. Sci. U.S.A. ...
The methods for sequence analysis of synthetic polymers differ from the sequence analysis of biopolymers (e. g. DNA or proteins ... Other options besides traditional NMR spectroscopy for sequence analysis are listed here; these include Kerr-effect for ... for the sequence analysis of synthetic copolymers.⁠ NMR spectroscopy allows determination of the relative abundance of ... Structure analysis of the reaction products by IR and 1H and 13C NMR". Journal of Polymer Science: Polymer Physics Edition. 20 ...
"Complete sequence and analysis of the plastid genome of the unicellular red alga Cyanidioschyzon merolae". DNA Research. 10 (2 ... and comparative analysis of sequence evolution among 17 vascular plants". DNA Research. 11 (4): 247-61. doi:10.1093/dnares/11.4 ... Wang L, Mao Y, Kong F, Li G, Ma F, Zhang B, Sun P, Bi G, Zhang F, Xue H, Cao M (2013-05-29). "Complete sequence and analysis of ... List of sequenced eukaryotic genomes List of sequenced bacterial genomes List of sequenced archaeal genomes Genome skimming ...
Bioinformatics for DNA Sequence Analysis. Methods in Molecular Biology. Vol. 537. Humana Press. pp. 23-38. doi:10.1007/978-1- ... Sequence homology is the biological homology between DNA, RNA, or protein sequences, defined in terms of shared ancestry in the ... Two organisms that are very closely related are likely to display very similar DNA sequences between two orthologs. Conversely ... Homologous sequence regions are also called conserved. This is not to be confused with conservation in amino acid sequences, ...
The process has been applied to DNA sequence analysis. The use of iterated maps for sequence analysis was first introduced by ... To define the distance between two DNA or protein sequences, kmacs estimates for each position i of the first sequence the ... The pioneering approaches for sequence analysis were based on sequence alignment either global or local, pairwise or multiple ... In bioinformatics, alignment-free sequence analysis approaches to molecular sequence and structure data provide alternatives ...
"Nucleotide sequence analysis of DNA. I. Partial sequence of the cohesive ends of bacteriophage lambda and 186 DNA". Journal of ... and developed the first method for sequencing DNA and studying transgenic plants. Wu, H (1931). "Studies on Denaturation of ...
An Interactive Online Database for the Analysis of Codon Usage and Sequence Composition". Bioinformatics for DNA Sequence ... The mRNA sequence is determined by the sequence of genomic DNA. In this context, the standard genetic code is referred to as ... The DNA codons in such tables occur on the sense DNA strand and are arranged in a 5′-to-3′ direction. Different tables with ... In the standard code, the sequence AUG-read as methionine-can serve as a start codon and, along with sequences such as an ...
"Nucleotide sequence analysis of DNA. 28. Arthrobacter luteus restriction endonuclease recognition sequence and its cleavage map ... The cleavage occurs at the center of the palindromic tetranucleotide sequence, which gives even-ended duplex DNA fragments ... The Alu will then be used to digest the SV40 DNA. The fragments have been able to be arranged so that the physical cleavage map ... is extracted from the bacterium and acts at the centre of a palindromic tetranucleotide sequence to give even-ended duplex DNA ...
Padmanabhan, R.; Wu, Ray (1972). "Use of oligonucleotides of defined sequences as primers in DNA sequence analysis". ... Wu, Ray (19 April 1972). "Nucleotide Sequence Analysis of DNA". Nature. 236 (68): 198-200. doi:10.1038/newbio236198a0. PMID ... Plant genetics pioneer Ray Wu invented the first method for sequencing DNA, considered a major breakthrough in genetics as it ...
Bioinformatics for DNA Sequence Analysis. Methods in Molecular Biology. Vol. 537. Humana Press. pp. 139-161. doi:10.1007/978-1- ... Additional methods include the Min Cut Supertree approach, Most Similar Supertree Analysis (MSSA), Distance Fit (DFIT) and ... investigating phylogenetic information through supertree analyses". Bioinformatics. 21 (3): 390-392. doi:10.1093/bioinformatics ...
In bioinformatics, sequence analysis is the process of subjecting a DNA, RNA or peptide sequence to any of a wide range of ... Analysis Sequence mining Alignment-free sequence analysis Fourier transform Least-squares spectral analysis List of sequence ... Sequence assembly refers to the reconstruction of a DNA sequence by aligning and merging small DNA fragments. It is an integral ... Since presently-available DNA sequencing technologies are ill-suited for reading long sequences, large pieces of DNA (such as ...
by 16S Ribosomal DNA Sequence Analysis". International Journal of Systematic Bacteriology. 47 (4): 921-925. doi:10.1099/ ... Molecular analysis of the patient isolate allowed the classification of the strain to B. lusitaniae, a genospecies previously ... Vitorino, L. L.; Margos, G.; Zé-Zé, L.; Kurtenbach, K.; Collares-Pereira n, M. (2010). "Plasmid profile analysis of Portuguese ... "Fine-Scale Phylogeographic Structure of Borrelia lusitaniae Revealed by Multilocus Sequence Typing". PLOS ONE. 3 (12): 1-13. ...
DNA sequence analysis further confirmed the identity. Another case found N. sphaerica isolated from a corneal ulcer. A woman in ... rRNA sequence comparison of the ITS region confirmed N. sphaerica identity. Cases of leaf spot disease of kiwi fruit (Actinidia ... Analysis of corneal scrapings showed presence of hyphae elements suggesting cause of ulcer from a fungal pathogen. Isolated ...
August 2004). "Cloning and analysis of human Apg16L". DNA Sequence. 15 (4): 303-5. doi:10.1080/10425170400004104. PMID 15620219 ... August 2004). "Cloning and analysis of human Apg16L". DNA Sequence. 15 (4): 303-5. doi:10.1080/10425170400004104. PMID 15620219 ... ATG16L2 is a related protein, which is also highly conserved (both ATG16L1 and 2 share 94 and 83% sequence identity). It has ... Yamazaki K, Onouchi Y, Takazoe M, Kubo M, Nakamura Y, Hata A (2007). "Association analysis of genetic variants in IL23R, ...
... (sometimes called target amplicon sequencing) (TAS) is a next-generation DNA sequencing technique ... "Targeted DNA Methylation Analysis by Next-generation Sequencing". Journal of Visualized Experiments. 96 (96): 52488. doi: ... v t e (DNA sequencing, All stub articles, Genetics stubs). ... Next-gen sequencing use shorter reads 50-400 base pairs which ... TAS is also useful in DNA studies because it allows for amplification of the needed gene area via PCR, which is followed by ...
Palatnick, Aspyn; Zhou, Bin; Ghedin, Elodie; Schatz, Michael C (2020-12-07). "iGenomics: Comprehensive DNA sequence analysis on ... "Purdue chemical-analysis method promises fast results". Pursue University. 2006-03-16. Archived from the original on April 8, ... "The world's first DNA "tricorder" in your pocket". Cold Spring Harbor Laboratory. 2020-12-07. Retrieved 2020-12-26. "rHEALTH ... Michael Schatz and his intern Aspyn Palatnick published a paper on the first mobile app to allow anybody to study DNA virtually ...
Mulet, Magdalena; Lalucat, Jorge; García-Valdés, Elena (March 2010). "DNA sequence-based analysis of the Pseudomonas species". ... Based on 16S rRNA analysis, similar species have been placed in its group. A comparative genomic and phylogenomic study in 2020 ... Jul 2000). "Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence". Int J Syst Evol Microbiol. 50 (4): 1563- ... Nikolaidis, Marios; Mossialos, Dimitris; Oliver, Stephen G.; Amoutzias, Grigorios D. (2020-07-24). "Comparative Analysis of the ...
Further DNA sequence analyses supported the Euarchonta hypothesis. Despite multiple papers pointing out that some mitochondrial ... Kumar, Vikas; Hallström, Björn M.; Janke, Axel (2013-04-01). "Coalescent-Based Genome Analyses Resolve the Early Branches of ... Comparing multi-gene analyses with phylogenomic results leaves monophyly of Euarchonta doubtful". Integrative Zoology. 10 (2): ... and despite earlier studies showing near total congruence of mtDNA-based and nuclear-based trees when such sequences were ...
2004). "DNA sequence and analysis of human chromosome 9". Nature. 429 (6990): 369-74. Bibcode:2004Natur.429..369H. doi:10.1038/ ... PubMed id 20379614)1, 4 Rose J.E....Uhl G.R. (2010) 8. DNA sequence and analysis of human chromosome 9. (PubMed id 15164053)1, ... 2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci ... This gene is found in a cluster with two other members of the gene family, having in common a zinc finger-like DNA-binding ...
Young, Brian; Faris, Tom; Armogida, Luigi (2019). "A nomenclature for sequence-based forensic DNA analysis". Genetics. Forensic ... "Analysis of identifier performance using a deterministic linkage algorithm", Proceedings. AMIA Symposium: 305-309, PMC 2244404 ...
Cloning and sequence analysis of the complementary DNA". Biochemistry. 26 (13): 3975-82. doi:10.1021/bi00387a035. PMID 3651428 ...
Mulet, Magdalena; Lalucat, Jorge; García-Valdés, Elena (March 2010). "DNA sequence-based analysis of the Pseudomonas species". ... It belongs to the Pseudomonas genus; 16S rRNA analysis as well as phylogenomic analysis has placed P. fluorescens in the P. ... The phylogenomic analysis clearly showed that the 25 strains annotated as P. fluorescens did not form a monophyletic group. In ... Phylogenetic and genomic analysis, though, has revealed that the entire phl gene cluster is ancestral to P. fluorescens, many ...
Palatnick, Aspyn; Zhou, Bin; Ghedin, Elodie; Schatz, Michael C (December 2020). "iGenomics: Comprehensive DNA sequence analysis ... "Sequencing DNA in Space - SpaceRef". spaceref.com. Retrieved 25 July 2016. Rainey, Kristine (29 August 2016). "First DNA ... analysis of structural variants in cancer, haplotyping, analysis of fetal DNA, and other applications. Publications indicate a ... sequencing one strand of the duplex DNA), '2D' accuracy (sequencing both the template and complement strand) and assembled ...
Mulet M, Lalucat J, García-Valdés E. (2010). "DNA sequence-based analysis of the Pseudomonas species". Environ Microbiol. 12 (6 ... Recently, 16S rRNA sequence analysis has redefined the taxonomy of many bacterial species. As a result, the genus Pseudomonas ... This mis-annotation problem has been reported by other analyses as well. In 2000, the complete genome sequence of a Pseudomonas ... 2020 Recently, 16S rRNA sequence analysis redefined the taxonomy of many bacterial species previously classified as being in ...
"DNA sequence and analysis of human chromosome 18". Nature. 437 (7058): 551-5. Bibcode:2005Natur.437..551N. doi:10.1038/ ... "Trapping and sequence analysis of 1138 putative exons from human chromosome 18". Mol Psychiatry. 8 (6): 619-23. doi:10.1038/sj. ... Chromosome 18 spans about 80 million base pairs (the building material of DNA) and represents about 2.5 percent of the total ... the collaborative consensus coding sequence project (CCDS) takes an extremely conservative strategy. So CCDS's gene number ...
"A Guide to Environmental DNA (eDNA) by Biomeme". Biomeme. Wang, Xinkun (2016). Next-generation Sequencing Data Analysis. Boca ... Relic DNA dynamics Extracellular DNA, sometimes called relic DNA, is DNA from dead microbes. Naked extracellular DNA (eDNA), ... The purified DNA is then amplified for a specific gene target so it can be sequenced and categorised based on its sequence. ... If the diversity of sequences contained in the relic DNA pool is sufficiently different from that in the intact DNA pool, then ...
2006). "DNA sequence and analysis of human chromosome 8". Nature. 439 (7074): 331-5. Bibcode:2006Natur.439..331N. doi:10.1038/ ... 2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci ... 2007). "Signal sequence and keyword trap in silico for selection of full-length human cDNAs encoding secretion or membrane ... 2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40-5. doi:10.1038/ ...
2004). "DNA sequence and analysis of human chromosome 9". Nature. 429 (6990): 369-74. Bibcode:2004Natur.429..369H. doi:10.1038/ ... The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro". DNA Res. 7 (4): 273-81. doi: ... 2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci ... 2001). "Toward a Catalog of Human Genes and Proteins: Sequencing and Analysis of 500 Novel Complete Protein Coding Human cDNAs ...
October 2003). "The DNA sequence and analysis of human chromosome 6". Nature. 425 (6960): 805-11. Bibcode:2003Natur.425..805M. ... Chromosome 6 spans more than 172 million base pairs (the building material of DNA) and represents between 5.5 and 6% of the ... signal sequence receptor subunit 1 (6p24.3) TCF19: transcription factor 19 (6p21.33) TCP11: t-complex 11 (6p21.31) TJAP1: tight ... the collaborative consensus coding sequence project (CCDS) takes an extremely conservative strategy. So CCDS's gene number ...