Bacterial small RNAs (bsRNA) are small RNAs produced by bacteria; they are 50- to 500-nucleotide non-coding RNA molecules, ... May 2015). "SRD: a Staphylococcus regulatory RNA database". RNA. 21 (5): 1005-17. doi:10.1261/rna.049346.114. PMC 4408781. PMID ... How ribonucleases dictate the rules in the control of small non-coding RNAs". RNA Biology. 5 (4): 230-43. doi:10.4161/rna.6915 ... Li L, Huang D, Cheung MK, Nong W, Huang Q, Kwan HS (January 2013). "BSRD: a repository for bacterial small regulatory RNA". ...

Furthermore, IF2 exhibits RNA chaperone activity, which enables it to rectify misfolded RNA structures. In general, the IF2 ... Bacterial initiation factor 3 (infC) is not universally found in all bacterial species but in E. coli it is required for the ... "Initiation factor IF 2 binds to the alpha-sarcin loop and helix 89 of Escherichia coli 23S ribosomal RNA". RNA. 7 (8): 1173- ... Bacterial initiation factor 1 associates with the 30S ribosomal subunit in the A site and prevents an aminoacyl-tRNA from ...

Bacterial Sequencing The Ribosomal Database Project Archived 2020-08-19 at the Wayback Machine Ribosomes and Ribosomal RNA: ( ... 16S ribosomal RNA (or 16S rRNA) is the RNA component of the 30S subunit of a prokaryotic ribosome (SSU rRNA). It binds to the ... "Comparative RNA function analysis reveals high functional similarity between distantly related bacterial 16 S rRNAs". ... "Comparative RNA function analysis reveals high functional similarity between distantly related bacterial 16 S rRNAs". ...

Westermann, Alexander J.; Vogel, Jörg (2018). "Host-Pathogen Transcriptomics by Dual RNA-Seq". Bacterial Regulatory RNA. ... Single-cell RNA sequencing and dual host-pathogen RNA sequencing are some of the commercially available RNA sequencing ... RNA-Seq allows clinicians to trace cancers when other diagnostic results are ambiguous. RNA sequencing allows further cell ... The importance of RNA sequencing in the diagnostics of malignant disorders, such as leukoplakia, is increasing. Transcriptome ...

Bacterial Regulatory RNA. Methods in Molecular Biology. Vol. 905. pp. 273-89. doi:10.1007/978-1-61779-949-5_18. ISBN 978-1- ... Dirks-Hofmeister ME, Kolkenbrock S, Moerschbacher BM (2013). "Parameters that enhance the bacterial expression of active plant ... "Ribosome Purification Approaches for Studying Interactions of Regulatory Proteins and RNAs with the Ribosome". ...

Majdalani N, Vanderpool CK, Gottesman S (2005). "Bacterial small RNA regulators". Crit. Rev. Biochem. Mol. Biol. 40 (2): 93-113 ... CrfA RNA (Caulobacter response to famine RNA) is a family of non-coding RNAs found in Caulobacter crescentus. CrfA is expressed ... CrfA RNA is one of only 8 putative ncRNAs conserved in the closely related Caulobacter sp. K31. CrfA was found to be ... Landt SG, Abeliuk E, McGrath PT, Lesley JA, McAdams HH, Shapiro L (May 2008). "Small non-coding RNAs in Caulobacter crescentus ...

Within genetics, post-genomic research has rendered bacterial small non-coding RNAs (sRNAs) as major players in post- ... Majdalani N, Vanderpool CK, Gottesman S (2005). "Bacterial small RNA regulators". Crit Rev Biochem Mol Biol. 40 (2): 93-113. ... These new genomic loci were referred to as smr, for S. meliloti RNA. Seven of the Smr transcripts, which conservation is ... "Identification of differentially expressed small non-coding RNAs in the legume endosymbiont Sinorhizobium meliloti by ...

Bacterial small RNA Wen, Y; Feng, J; Scott, DR; Marcus, EA; Sachs, G (January 2011). "A cis-encoded antisense small RNA ... In molecular biology, 5' ureB sRNA is a small RNA. It is located at the 5' end of the ureB gene in the urease gene cluster and ... Wen, Y; Feng, J; Sachs, G (February 2013). "Helicobacter pylori 5'ureB-sRNA, a cis-encoded antisense small RNA, negatively ...

Bacterial small RNA Schilling, D; Findeiss, S; Richter, AS; Taylor, JA; Gerischer, U (September 2010). "The small RNA Aar in ... In molecular biology, the Aar small RNA is a small RNA (sRNA) produced by species of Acinetobacter. It was first discovered in ... Articles with short description, Short description matches Wikidata, RNA, Non-coding RNA). ... Schilling, D; Findeiss, S; Richter, AS; Taylor, JA; Gerischer, U (September 2010). "The small RNA Aar in Acinetobacter baylyi: ...

Papenfort K, Vogel J (July 2010). "Regulatory RNA in bacterial pathogens". Cell Host Microbe. 8 (1): 116-127. doi:10.1016/j. ... Sib RNA refers to a group of related non-coding RNA. They were originally named QUAD RNA after they were discovered as four ... Page for QUAD RNA at Rfam (Protein pages needing a picture, Antisense RNA, RNA antitoxins). ... Sib RNA regulates the expression of a toxic protein in a type I toxin-antitoxin system similar to that of hok/sok andldr-rdl ...

Schröder O, Wagner R (May 2000). "The bacterial DNA-binding protein H-NS represses ribosomal RNA transcription by trapping RNA ... It has been found that H-NS and RNA polymerase both bind to the P1 promoter and form a complex. When H-NS is bound with RNA ... Additional to this RNA function, it was also demonstrated that HU binds DsrA, a small non-coding RNA that regulates ... However, this protein's function is not solely confined to DNA; HU also binds to RNA and DNA-RNA hybrids with the same affinity ...

All-Species Living Tree Project."16S rRNA-based LTP release 132". Silva Comprehensive Ribosomal RNA Database. Retrieved 2020-08 ... 2006 "Teskebacteria" Dojka 1998 (WS1) Branching order of bacterial phyla (Woese, 1987) Branching order of bacterial phyla ( ... Bacterial phyla List of Archaea genera List of bacteria genera LPSN, list of accepted bacterial and archaeal names Human ... Branching order of bacterial phyla (Ciccarelli et al., 2006) Branching order of bacterial phyla after ARB Silva Living Tree ...

Two of these RNAs, csRNA4 and csRNA5, have been shown to affect stationary-phase autolysis. Bacterial small RNA Halfmann, A; ... In molecular biology, cia-dependent small RNAs (csRNAs) are small RNAs produced by Streptococci. These RNAs are part of the ... Marx, P; Nuhn, M; Kovács, M; Hakenbeck, R; Brückner, R (Nov 24, 2010). "Identification of genes for small non-coding RNAs that ... five out of 15 promoters drive expression of small non-coding RNAs". Molecular Microbiology. 66 (1): 110-126. doi:10.1111/j. ...

Bacterial small RNA Shimizu, T; Yaguchi, H; Ohtani, K; Banu, S; Hayashi, H (Jan 2002). "Clostridial VirR/VirS regulon involves ... In molecular biology, VR-RNA is a small RNA produced by Clostridium perfringens. It functions as a regulator of the two- ... Orphaned articles from April 2014, All orphaned articles, RNA, Non-coding RNA). ... VR-RNA regulates numerous genes including: Toxin-encoding genes plc, colA and cpb2 Other virulence-related genes such as ...

In 1987 Carl Woese divided the Eubacteria into 11 divisions based on 16S ribosomal RNA (SSU) sequences, which with several ... nov.) paraphyly, monophyly, and polyphyly Branching order of bacterial phyla (Woese, 1987) Branching order of bacterial phyla ( ... Bacterial phyla, a complicated classification List of Archaea genera List of Bacteria genera List of bacterial orders List of ... Branching order of bacterial phyla (Ciccarelli et al., 2006) Branching order of bacterial phyla after ARB Silva Living Tree ...

Bacterial small RNA Kreikemeyer, B; Boyle, MD; Buttaro, BA; Heinemann, M; Podbielski, A (Jan 2001). "Group A streptococcal ... Le Rhun, A; Charpentier, E (Apr 2012). "Small RNAs in streptococci". RNA Biology. 9 (4): 414-426. doi:10.4161/rna.20104. PMID ... "The small regulatory RNA FasX controls pilus expression and adherence in the human bacterial pathogen group A Streptococcus". ... Ramirez-Peña, E; Treviño, J; Liu, Z; Perez, N; Sumby, P (Dec 2010). "The group A Streptococcus small regulatory RNA FasX ...

"ARB-Silva: comprehensive ribosomal RNA database". The ARB development Team. Retrieved 2 January 2016. Alexander L. Jaffe, Cindy ... Bacterial phyla entry in LPSN; Euzéby, J.P. (1997). "List of Bacterial Names with Standing in Nomenclature: a folder available ... Bacterial phyla constitute the major lineages of the domain Bacteria. While the exact definition of a bacterial phylum is ... When bacterial nomenclature was controlled under the Botanical Code, the term division was used, but now that bacterial ...

Westhof E (2010). "The amazing world of bacterial structured RNAs". Genome Biol. 11 (3): 108. doi:10.1186/gb-2010-11-3-108. PMC ... Ames TD, Breaker RR (January 2011). "Bacterial aptamers that selectively bind glutamine". RNA Biol. 8 (1): 82-89. doi:10.4161/ ... Some glnA RNAs are located adjacent to other glnA RNAs. These "tandem arrangements" are also exhibited by glycine riboswitches ... Page for glnA RNA at Rfam (Articles with short description, Short description matches Wikidata, Cis-regulatory RNA elements, ...

The number of tRNA genes per genome can vary widely, with bacterial species from groups such as Fusobacteria and Tenericutes ... Transfer RNA (abbreviated tRNA and formerly referred to as sRNA, for soluble RNA) is an adaptor molecule composed of RNA, ... doi:10.4161/rna.27177. PMC 3917982. PMID 24351723. Shigematsu M, Honda S, Kirino Y (2014). "Transfer RNA as a source of small ... Cloverleaf model of tRNA Kim Sung-Hou Kissing stem-loop mRNA non-coding RNA and introns Slippery sequence tmRNA Transfer RNA- ...

In order to modulate this process, a bacterial riboswitch will aid in the development of a strong stem-like structure which is ... RNA Biology. 7 (1): 77-83. doi:10.4161/rna.7.1.10490. ISSN 1547-6286. PMID 20023416. S2CID 35406547. Sarkar, Raju; Jaiswar, ... The Magnesium responsive RNA element, not to be confused with the completely distinct M-box riboswitch, is a cis-regulatory ... The way in which both the M-box riboswitch may appear similar to that of the magnesium responsive RNA element is in the ...

She has also played a major role in the discovery and characterization of bacterial small RNAs. Gottesman was born on May 19, ... Small RNA are short RNA sequences that have a wide variety of functions within cells. They have been shown to be vital in cell ... The small RNAs have also been shown to be a factor in certain diseases such as cancer, diabetes, and liver disease. The ATP- ... The DsrA small RNA helps to translate the RpoS factor by binding to the RpoS leader sequence. Elected to the National Academy ...

"Bacterial Genome Containing Chimeric DNA-RNA Sequences". Journal of the American Chemical Society. 140 (36): 11464-11473. doi: ... One goal of this work is to culture the yeast-bacteria hybrids and see whether the bacterial genome evolves to increase the ... A bacterial organism has been generated which biosynthesizes a novel, previously unnatural amino acid (p-aminophenylalanine) ... and bacteria whose chromosomes are hybrids which include both RNA and DNA. In order to probe details of the traditionally ...

Kortmann J, Narberhaus F (March 2012). "Bacterial RNA thermometers: molecular zippers and switches". Nature Reviews. ... Upstream activation sequence RNA List of cis-regulatory RNA elements Polyadenylation signals, mRNA AU-rich element, mRNA Other ... RNA, Non-coding RNA, DNA, Non-coding DNA). ... The operator itself does not code for any protein or RNA. In ... Only once this region has been bound with the appropriate set of TFs, and in the proper order, can RNA polymerase bind and ...

This ribosomal binding site in bacterial messenger RNA became known as the Shine-Dalgarno (SD) sequence. It enables initiation ... Shine, John; Dalgarno, Lynne (September 1975). "Terminal‐Sequence Analysis of Bacterial Ribosomal RNA". European Journal of ... Dalgarno, L.; Martin, E.M.; Liu, S.-L.; Work, T.S. (January 1966). "Characterization of the products formed by the RNA ... Dalgarno, L; Martin, E.M (July 1965). "Studies on EMC viral RNA synthesis and its localization in infected krebs ascites cells ...

Only four instances of the RNA were detected, and all are in the bacterial phylum Dictyoglomota (formerly Dictyoglomi), whose ... Westhof E (2010). "The amazing world of bacterial structured RNAs". Genome Biol. 11: 108. doi:10.1186/gb-2010-11-3-108. PMC ... The RNA might have a cis-regulatory role, but the evidence is ambiguous. Because of the few instances of Dictyoglomi-1 RNAs ... Weinberg Z, Perreault J, Meyer MM, Breaker RR (December 2009). "Exceptional structured noncoding RNAs revealed by bacterial ...

RyfA RNA RydB RNA RybB RNA Antal M, Bordeau V, Douchin V, Felden B (March 2005). "A small bacterial RNA regulates a putative ... RydC is a bacterial non-coding RNA. RydC is thought to regulate a mRNA, yejABEF, which encodes an ABC transporter protein. RydC ... Page for RydC RNA at Rfam v t e (Non-coding RNA, All stub articles, Molecular and cellular biology stubs). ... biofilm formation in enteric bacteria are controlled by a dynamic small RNA module made up of a pseudoknot assisted by an RNA ...

Lim K, Furuta Y, Kobayashi I (October 2012). "Large variations in bacterial ribosomal RNA genes". Molecular Biology and ... tRNA replication origin regions tRNA small RNA ribosomal protein replication origin regions ribosomal RNA tRNAs ribosomal RNA ... The two RNA polymerases may recognize and bind to different kinds of promoters within the chloroplast genome. The ribosomes in ... While similar to bacterial ribosomes, chloroplast translation is more complex than in bacteria, so chloroplast ribosomes ...

Hausner G, Hafez M, Edgell DR (March 2014). "Bacterial group I introns: mobile RNA catalysts". Mobile DNA. 5 (1): 8. doi: ... Viruses: These are viral agents composed of a molecule of genetic material (DNA or RNA) and with the ability to form complex ... Satellite nucleic acids: These are DNA or RNA molecules, which are encapsulated as a stowaway in the virions of certain helper ... Viroids: These are viral agents that consist of small circular RNA molecules that infect and replicate in plants. These mobile ...

RNA. 11 (6): e1599. doi:10.1002/wrna.1599. PMC 7554086. PMID 32445438. Dorone, Yanniv; Boeynaems, Steven; Jin, Benjamin; Bossi ... Muthunayake NS, Tomares DT, Childers WS, Schrader JM (November 2020). "Phase-separated bacterial ribonucleoprotein bodies ... By modifying the sticker-spacer framework, i.e. the polypeptide and RNA sequences as well as their mixture compositions, the ... Advances in confocal microscopy at the end of the 20th century identified proteins, RNA or carbohydrates localising to many non ...

Bechhofer DH, Deutscher MP (June 2019). "Bacterial ribonucleases and their roles in RNA metabolism". Critical Reviews in ... Hsiao YY, Yang CC, Lin CL, Lin JL, Duh Y, Yuan HS (April 2011). "Structural basis for RNA trimming by RNase T in stable RNA 3'- ... It is inhibited by both double stranded DNA and RNA, as well as cytosine residues on the 3' end of RNA. Two cytosines at the 3 ... Li Z, Pandit S, Deutscher MP (January 1999). "Maturation of 23S ribosomal RNA requires the exoribonuclease RNase T". RNA. 5 (1 ...

SRE small RNA Tomlinson, D. L. (January 1988). "A Leaf and Fruit Disease of Pandanus conoideus caused by Erwinia carotovora ... All in all, bacterial soft rots cause a greater loss of produce than any other bacterial disease known. The bacteria, Erwinia ... Bacterial soft rots are caused by several types of bacteria, but most commonly by species of gram-negative bacteria, Erwinia, ... There are many ways in which a plant can become infected by a bacterial soft rot. They can be host to the bacteria either by ...

No evidence of RNA alternate splicing was determined. Kagachi, Chihiro (2007). "A Comparison of Bacterial Genomes". Seikagaku- ...