Cyanobacterial clock proteins
... the cyanobacterial clock proteins are the main circadian regulator in cyanobacteria. The cyanobacterial clock proteins comprise ... "Structure and function from the circadian clock protein KaiA of Synechococcus elongatus: a potential clock input mechanism". ... Garces RG, Wu N, Gillon W, Pai EF (April 2004). "Anabaena circadian clock proteins KaiA and KaiB reveal a potential common ... Hitomi K, Oyama T, Han S, Arvai AS, Getzoff E (2005). "Tetrameric architecture of the circadian clock protein KaiB. A novel ...
Ancient protein
Unlocking Ancient Protein Palimpsests Amino acid Protein Proteomics Ancient DNA Archaeogenetics Paleogenetics Molecular clock ... protein unfolding) or other diagenetic processes. Ancient proteins also tend to be fragmented, damaged and altered. Proteins ... Ancient enamel proteins are useful when aDNA or other proteins do not survive, and they have been analysed to understand ... However, ancient proteins are still one of the most informative biomolecules. Proteins tend to degrade more slowly than DNA, ...
Period circadian protein homolog 1
PER interacts with other PER proteins as well as the E-box regulated, clock controlled proteins CRY1 and CRY2 to create a ... Period circadian protein homolog 1 is a protein in humans that is encoded by the PER1 gene. The PER1 protein is important to ... PER1 also interacts with proteins ATM and Chk2. These proteins are key checkpoint proteins in the cell cycle. Cancer patients ... which creates a cell autonomous molecular clock. PER1 transcription is regulated by protein interactions with its five E-box ...
Non-POU domain-containing octamer-binding protein
DNA unwinding and pairing and maintaining correct circadian clock function. NONO has been identified to bind with Rasd1 protein ... Due to the protein being originally identified as a RNA-binding protein it was named p54nrb for Nuclear RNA-binding protein, 54 ... As with all proteins of the DBHS familprotein is described as a multifunctional nuclear protein. The NONO protein has been ... The NonO protein belongs to the Drosophila behaviour/human splicing (DBHS) family of proteins. Proteins in the DHBS family ...
Chromosome 9 open reading frame 43
"Protein BLAST: search protein databases using a protein query". blast.ncbi.nlm.nih.gov. Retrieved 2018-05-05. EMBL-EBI. "EBI ... C9orf43 divergence is moderate based on the molecular clock hypothesis. C9orf43 is seen to diverge more quickly than cytochrome ... The protein does not contain signal peptides or mitochondrial targeting signals indicating the protein is not predicted to be ... Isoform X1 protein abundance is predicted to be normal with normal expression. Composition analysis of C9orf43 showed an above ...
AutoDock
Proteins. 65 (3): 549-54. doi:10.1002/prot.21183. PMID 16988956. S2CID 28351121. Gupta G (2020-05-26). "Racing the Clock, COVID ... "Protein-ligand docking: current status and future challenges". Proteins. 65 (1): 15-26. doi:10.1002/prot.21082. PMID 16862531. ... AutoDock consists of two main programs: AutoDock for docking of the ligand to a set of grids describing the target protein; ... Goodsell DS, Sanner MF, Olson AJ, Forli S (August 2020). "The AutoDock suite at 30". Protein Science. 30 (1): 31-43. doi: ...
Bacterial archaeal holin family
Wang, I. N.; Smith, D. L.; Young, R. (2000-01-01). "Holins: the protein clocks of bacteriophage infections". Annual Review of ... Protein families, Membrane proteins, Transmembrane proteins, Transmembrane transporters, Transport proteins, Integral membrane ... However, these proteins were retrieved when functionally characterized holins from the T-A Hol family (TC# 1.E.43) were BLASTED ... Most BAH proteins are between 125 and 140 amino acyl residues (aas) in length and exhibit 4 transmembrane segments (TMSs), ...
Putative holin-2 family
Holin Lysin Transporter Classification Database Wang, I. N.; Smith, D. L.; Young, R. (2000-01-01). "Holins: the protein clocks ... Protein families, Membrane proteins, Transmembrane proteins, Transmembrane transporters, Transport proteins, Integral membrane ... PH-2 family proteins are of 130 to 210 amino acyl residues (aas) in length and may exhibit 1 or 2 transmembrane segments (TMSs ... A representative list of proteins belonging to the PH-2 family can be found in the Transporter Classification Database. ...
Prophage Hp1 holin family
Wang, I. N.; Smith, D. L.; Young, R. (2000). "Holins: the protein clocks of bacteriophage infections". Annual Review of ... Protein families, Membrane proteins, Transmembrane proteins, Transmembrane transporters, Transport proteins, Integral membrane ... This protein is functionally uncharacterized and does not appear to be homologous to other holins. It does, however, show 31% ... proteins, Holins, All stub articles, Membrane protein stubs). ...
PhiU53 holin family
Wang, I. N.; Smith, D. L.; Young, R. (2000-01-01). "Holins: the protein clocks of bacteriophage infections". Annual Review of ... Protein families, Membrane proteins, Transmembrane proteins, Transmembrane transporters, Transport proteins, Integral membrane ...
Lysin
Wang IN, Smith DL, Young R (2000). "Holins: the protein clocks of bacteriophage infections". Annual Review of Microbiology. 54 ... The prototypical holin is the lambda phage S protein, which assists the lambda phage R protein (lysin). All holins embed ... Unlike most antibiotics, proteins are prone to antibody recognition and binding, which means that lysins could be ineffective ... In order to solve such a problem, phage viruses synthesize another protein called holin which binds to the cell membrane and ...
P68 holin family
Wang, I. N.; Smith, D. L.; Young, R. (2000-01-01). "Holins: the protein clocks of bacteriophage infections". Annual Review of ... Protein families, Membrane proteins, Transmembrane proteins, Transmembrane transporters, Transport proteins, Integral membrane ... this protein has not been functionally characterized.[2] Holin Lysin Transporter Classification Database Reddy, Bhaskara L.; ...
3-Hol family
Wang, I. N.; Smith, D. L.; Young, R. (2000-01-01). "Holins: the protein clocks of bacteriophage infections". Annual Review of ... While many of the proteins belonging to this family are annotated in holins, they remain functionally uncharacterized. Holin ... A representative list of the proteins belonging to this family can be found in the Transporter Classification Database. ...
LP holin family
Wang, I. N.; Smith, D. L.; Young, R. (2000-01-01). "Holins: the protein clocks of bacteriophage infections". Annual Review of ... Protein families, Membrane proteins, Transmembrane proteins, Transmembrane transporters, Transport proteins, Integral membrane ... While annotated as holins, these proteins remain functionally uncharacterized. A representative list of proteins belonging to ... The Putative Listeria Phage Holin (LP-Hol) Family (TC# 1.E.51) consists of several small proteins of 41 amino acyl residues ( ...
BP holin family
Wang, I. N.; Smith, D. L.; Young, R. (2000-01-01). "Holins: the protein clocks of bacteriophage infections". Annual Review of ... Protein families, Membrane proteins, Transmembrane proteins, Transmembrane transporters, Transport proteins, Integral membrane ... although BP-Hol proteins remain functionally uncharacterized. A representative list of the proteins belonging to the BP-Hol ... These proteins are of 60 to 110 amino acyl residues (aas) in length and exhibit 1 or 2 transmembrane segments (TMSs). Some are ...
A2 holin family
Wang, I. N.; Smith, D. L.; Young, R. (2000-01-01). "Holins: the protein clocks of bacteriophage infections". Annual Review of ... Membrane proteins, Transmembrane proteins, Transmembrane transporters, Transport proteins, Integral membrane proteins, Holins) ... This protein brings up other glycosyltransferases in a NCBI BLAST search. The adjacent gene encodes a small protein of 132 aas ... This protein has the UniProt accession number of S2E3C4. Paralogues are found in this same organism (Candidatus Nitrosoarchaeum ...
Treponema 4 TMS holin family
Wang, I. N.; Smith, D. L.; Young, R. (2000-01-01). "Holins: the protein clocks of bacteriophage infections". Annual Review of ... Protein families, Membrane proteins, Transmembrane proteins, Transmembrane transporters, Transport proteins, Integral membrane ... The Putative Treponema 4 TMS Holin (Tre4Hol) Family (TC# 1.E.49) consists of several proteins from Treponema species. They ...
Hol-Tox family
Wang, I. N.; Smith, D. L.; Young, R. (2000). "Holins: the protein clocks of bacteriophage infections". Annual Review of ... Protein families, Membrane proteins, Transmembrane proteins, Transmembrane transporters, Transport proteins, Integral membrane ... The putative holin-like toxin (Hol-Tox) family (TC# 1.E.42) consists of many small proteins, between 34 and 48 amino acyl ... A representative list of proteins belonging to the Hol-Tox family can be found in the Transporter Classification Database. ...
T-A hol family
PMID 25157079.. Wang, IN; Smith, DL; Young, R (2000). "Holins: the protein clocks of bacteriophage infections". Annu. Rev. ... Protein families, Membrane proteins, Transmembrane proteins, Transmembrane transporters, Transport proteins, Integral membrane ... Phage-like transmembrane protein', 'YeaQ protein', etc. in the NCBI protein database. As of early 2016, they remain ... These proteins are related to the RDD family (TC# 9.B.45) in the conserved domain database. A representative list of proteins ...
NP-holin family
Holin Lysin Transporter Classification Database Wang, I. N.; Smith, D. L.; Young, R. (2000). "Holins: the protein clocks of ... Protein families, Membrane proteins, Transmembrane proteins, Transmembrane transporters, Transport proteins, Integral membrane ... Although annotated as phage proteins or holins, NP-Holin proteins are not yet functionally characterized, thus more research is ... The Neisserial Phage-associated Holin (NP-Holin) Family (TC# 1.E.22) is a family of small proteins, between 47-53 amino acyl ...
ArpQ holin family
Wang, Ing-Nang; Smith, David L.; Young, Ry (October 2000). "Holins: The Protein Clocks of Bacteriophage Infections". Annual ... Protein families, Membrane proteins, Transmembrane proteins, Transmembrane transporters, Transport proteins, Integral membrane ... The ArpQ Holin (ArpQ Holin) Family (TC# 1.E.15) consists of a single holin-like protein 58 amino acyl residues (aas) in length ... with 2 transmembrane segments (TMSs). This protein is encoded by the arpQ gene in Enterococcus hirae. While annotated as a ...
M1 hol family
Wang, IN; Smith, DL; Young, R (2000). "Holins: the protein clocks of bacteriophage infections". Annu. Rev. Microbiol. 54: 799- ... Protein families, Membrane proteins, Transmembrane proteins, Transmembrane transporters, Transport proteins, Integral membrane ... A representative list of proteins belonging to this family can be found in the Transporter Classification Database. Holin Lysin ...
Gene transfer agent-release holin family
Wang, I. N.; Smith, D. L.; Young, R. (2000). "Holins: the protein clocks of bacteriophage infections". Annual Review of ... "Phosphate concentration and the putative sensor kinase protein CckA modulate cell lysis and release of the Rhodobacter ...
T4 holin
Wang I, Smith DL, Young R (2000). "Holins: The Protein Clocks of Bacteriophage Infections". Annual Review of Microbiology. 54 ( ... Protein families, Membrane proteins, Transmembrane proteins, Transmembrane transporters, Transport proteins, Integral membrane ... The T4 Holin Family (TC# 1.E.8) is a group of putative pore-forming proteins that does not belong to one of the seven holin ... The protein is highly hydrophilic with 49 acidic and basic residues distributed along its length and a single putative ...
Gp36 hol family
Wang, IN; Smith, DL; Young, R (2000). "Holins: the protein clocks of bacteriophage infections". Annu. Rev. Microbiol. 54: 799- ... Protein families, Membrane proteins, Transmembrane proteins, Transmembrane transporters, Transport proteins, Integral membrane ... The Mycobacterial Phage PBI1 Gp36 Holin (Gp36 Hol) Family (TC# 1.E.39) consists of a single protein, Gp36 of Mycobacterial ... proteins, Holins, All stub articles, Membrane protein stubs). ... this protein has not been functionally characterized. Holin ...
T1 holin family
PMID 25157079.. Wang, IN; Smith, DL; Young, R (2000). "Holins: the protein clocks of bacteriophage infections". Annu. Rev. ... Protein families, Membrane proteins, Transmembrane proteins, Transmembrane transporters, Transport proteins, Integral membrane ... These proteins are short, 55 to 71 amino acyl residues (aas) in length, and exhibit a single transmembrane segment (TMS). A ... representative list of proteins belonging to the T1 Holin family can be found in the Transporter Classification Database. Holin ...
L2 holin family
Wang, I. N.; Smith, D. L.; Young, R. (2000-01-01). "Holins: the protein clocks of bacteriophage infections". Annual Review of ... Protein families, Membrane proteins, Transmembrane proteins, Transmembrane transporters, Transport proteins, Integral membrane ... and a homologous uncharacterized protein (TC# 1.E.59.1.2; 75 aas and 2 TMSs). These proteins are of particular interest because ...
XanPHol family
Wang, I. N.; Smith, D. L.; Young, R. (2000). "Holins: the protein clocks of bacteriophage infections". Annual Review of ... Protein families, Membrane proteins, Transmembrane proteins, Transmembrane transporters, Transport proteins, Integral membrane ... this protein does not show appreciable sequence similarity to any other proteins in the NCBI protein database. Holin Lysin ... It is a putative uncharacterized protein from Xanthomonas phage Xp15. This protein corresponds to sequence 68 from patent US ...
BhlA holin family
... protein". www.uniprot.org. Retrieved 2016-03-30. Wang, I. N.; Smith, D. L.; Young, R. (2000). "Holins: the protein clocks of ... BhlA proteins are generally about 67 to 80 amino acyl residues (aas) in length and exhibit a single N-terminal transmembrane ... A representative list of proteins belonging to this family can be found in the Transporter Classification Database. Holin Lysin ... v t e (Articles with imported Creative Commons Attribution-ShareAlike 3.0 text, Holins, All stub articles, Membrane protein ...
Enterobacterial holin family
Wang, I. N.; Smith, D. L.; Young, R. (2000-01-01). "Holins: the protein clocks of bacteriophage infections". Annual Review of ... Protein families, Membrane proteins, Transmembrane proteins, Transmembrane transporters, Transport proteins, Integral membrane ... As of March 2016, these proteins have not been functionally characterized. A representative list of proteins belonging to the ... The Enterobacterial Holin (EBHol) Family (TC# 1.E.48) consists of many closely related proteins of 100 to 120 amino acyl ...