While proteome generally refers to the proteome of an organism, multicellular organisms may have very different proteomes in ... Human proteome. Currently, several projects aim to map the human proteome, including the Human Proteome Map, ProteomicsDB, ... Dark proteome. The term dark proteome coined by Perdigão and colleagues, defines regions of proteins that have no detectable ... The proteins in a virus can be called a viral proteome. Usually viral proteomes are predicted from the viral genome but some ...
It estimated to be about 14% of the proteome in archaea and bacteria, and as much as 44-54% of the proteome in eukaryotes and ... The dark proteome is defined as proteins with no defined three-dimensional structure. It can not be detected or analyzed with ... Large portion of the dark proteome are of viral origin. Dark protein regions are dark due to originating from unusual organisms ... 2015). "Unexpected features of the dark proteome". PNAS. 112 (52): 15898-15903. Bibcode:2015PNAS..11215898P. doi:10.1073/pnas. ...
Users can view and download Proteome Analyst's results or ask Proteome Analyst to explain its predictions. Proteome Analyst ... Proteome Analyst was originally developed by the Proteome Analyst Research Group at the University of Alberta, and was ... Proteome Analyst is an example of one of the better performing subcellular prediction tools. Proteome Analyst makes predictions ... The initial release of Proteome Analyst used Naïve Bayes classifier to perform its predictions. The current version of Proteome ...
"Progress Identifying and Analyzing the Human Proteome: 2021 Metrics from the HUPO Human Proteome Project". Journal of Proteome ... The Human Proteome Project (HPP) is a collaborative effort coordinated by the Human Proteome Organization. Its stated goal is ... Updates on the Human Proteome Project are regularly published, e.g. in the Journal of Proteome Research (2014). Metrics for the ... "A gene-centric human proteome project: HUPO--the Human Proteome organization". Molecular & Cellular Proteomics. 9 (2): 427-429 ...
Proteome Sun Q, Zybailov B, Majeran W, Friso G, Olinares PD, van Wijk KJ. (2008) PPDB, the Plant Proteomics Database at Cornell ... The Plant Proteome Database is a National Science Foundation-funded project to determine the biological function of each ... 2 Oct PPDB Home Page: http://ppdb.tc.cornell.edu/ Plant Proteome Database home page v t e v t e (Plant physiology, Government ...
The Human Proteome Organization (HUPO) is an international consortium of national proteomics research associations, government ... Ultimately, it is organized to gain a better and more complete understanding of the human proteome. Since 2002, HUPO organizes ... Award in Proteomic Sciences Human Genome Organisation Human Genome Project Proteomics Standards Initiative Human Proteome ...
In 2013, J. Proteome Res. had an impact factor of 5.001 as reported in the 2013 Journal Citation Reports by Thomson Reuters, ... The Journal of Proteome Research is a peer-reviewed scientific journal published since 2002 by the American Chemical Society. ...
"The Proteome Folding Project: proteome-scale prediction of structure and function". Genome Research. 21 (11): 1981-94. doi: ... The Human Proteome Folding Project (HPF) is a collaborative effort between New York University (Bonneau Lab), the Institute for ... Used predictions as hypothesis for further experimental characterization) BOINC Folding@home Foldit Human proteome project List ... "The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts". Molecular Cell. 46 (5): 674-90. doi: ...
"Proteomes". www.mdpi.com. Retrieved 2022-02-21. "Proteomes". www.mdpi.com. Retrieved 2022-02-21. "Proteomes - NLM Catalog - ... Proteomes is a peer-reviewed open access scientific journal covering research in biochemistry and molecular biology, and ... focused on proteome analysis. It is published by MDPI and was established in 2013. The joint editor-in-chief are Jens R. ...
Proteome Science. Ramaswamy et al.; licensee BioMed Central Ltd. 9 (3). Proteome Science , Full text , Development of reverse ...
"Linking genome and proteome by mass spectrometry: large-scale identification of yeast proteins from two dimensional gels". Proc ... Proteome Science. 1 (1): 6. doi:10.1186/1477-5956-1-6. PMC 317362. PMID 14653859. Henzel, William J.; Watanabe, Colin; Stults, ...
2008). "Protein profiling of the dimorphic, pathogenic fungus, Penicillium marneffei". Proteome Sci. 6 (1): 17. doi:10.1186/ ...
Proteome Science. 3 (1): 2. doi:10.1186/1477-5956-3-2. PMC 554085. PMID 15730566. Burmester T, Weich B, Reinhardt S, Hankeln T ...
Proteome analysis. Transcriptome analysis. Epigenome analysis. Oral Microbiome analysis. 2013 Recruitment of TMM Community- ... 2015 A portal site of Japanese Multi Omics Reference Panel (jMorp), providing metabolome and proteome data from the cohort ... As of 2022, jMorp covers metabolome, proteome, transcriptome, methylome, as well as genome reference panel. 2016 Recruitment of ...
"Major soluble proteome changes in Deinococcus deserti over the earliest stages following gamma-ray irradiation". Proteome ... A total of 341 protein N termini were confidently identified in the D. deserti TMPP-labeled proteome. Among these, 63 were not ... Accurate genome annotation of its 3455 genes was guided at the stage of primary annotation by an extensive proteome analysis. A ... The N termini data set corresponds to 10% of the theoretical proteome. A significant number of erroneous annotations have ...
Pedrioli, Patrick G. A. (2010). "Trans-Proteomic Pipeline: A Pipeline for Proteomic Analysis". Proteome Bioinformatics. Methods ... Journal of Proteome Research. 3 (5): 958-64. arXiv:q-bio/0406002. Bibcode:2004q.bio.....6002G. doi:10.1021/pr0499491. PMID ... Journal of Proteome Research. 6 (2): 654-61. doi:10.1021/pr0604054. PMC 2525619. PMID 17269722. "OMSSA ms/ms search engine". ... Journal of Proteome Research. 15 (1): 332-338. doi:10.1021/acs.jproteome.5b00666. ISSN 1535-3907. PMID 26616242. Titeca, Kevin ...
Proteome Science. 6: 19. doi:10.1186/1477-5956-6-19. PMC 2440369. PMID 18558005. Arasaradnam, RP; Wicaksono, A; O'Brien, H; ...
Proteome Science. 15: 14. doi:10.1186/s12953-017-0123-3. PMC 5483283. PMID 28652856. Collins SR, Kemmeren P, Zhao XC, ... "Proteome survey reveals modularity of the yeast cell machinery". Nature. 440 (7084): 631-6. Bibcode:2006Natur.440..631G. doi: ...
The reference proteome set maintained by the UniProt resource is used in this version of PANTHER and so the source of gene sets ... "reference proteome". Details in PANTHER 9 statistics can be found here (http://www.pantherdb.org/panther/summaryStats.jsp) ( ...
Proteome Sci. 6 (1): 30. doi:10.1186/1477-5956-6-30. PMC 2600628. PMID 18950484. v t e (Laboratory techniques, All stub ...
Gupta R, Brunak S (2002). "Prediction of glycosylation across the human proteome and the correlation to protein function". ... Proteome Science. 13: 11. doi:10.1186/s12953-015-0065-6. PMC 4367857. PMID 25798074. Zhang J, Zhang S (June 2017). "Discovery ...
Mann, Karlheinz (2015). "The calcified eggshell matrix proteome of a songbird, the zebra finch (Taeniopygia guttata)". Proteome ... Mann, Karlheinz; Mann, Matthias (2013). "The proteome of the calcified layer organic matrix of turkey (Meleagris gallopavo) ... eggshell". Proteome Sci. 11 (1): 40. doi:10.1186/1477-5956-11-40. PMC 3766105. PMID 23981693. ...
2007). "A proteome-wide protein interaction map for Campylobacter jejuni". Genome Biol. 8 (7): R130. doi:10.1186/gb-2007-8-7- ... 2011). "The proteome and interactome of Streptococcus pneumoniae phage Cp-1". J. Bacteriol. 193 (12): 3135-8. doi:10.1128/JB. ... 2016). "A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human". Cell. 164 (1-2): ... For instance, even within a proteome two proteins may interact but their paralogs may not. Each protein-protein interactome may ...
April 2010). "Investigation of PARP-1, PARP-2, and PARG interactomes by affinity-purification mass spectrometry". Proteome ...
Proteome Res. 4 (6): 2070-80. doi:10.1021/pr0502065. PMC 1850943. PMID 16335952. Kimura K, Wakamatsu A, Suzuki Y, et al. (2006 ...
Andersen JS, Lam YW, Leung AK, Ong SE, Lyon CE, Lamond AI, Mann M (Jan 2005). "Nucleolar proteome dynamics". Nature. 433 (7021 ...
Proteome Res. 4 (6): 2070-80. doi:10.1021/pr0502065. PMC 1850943. PMID 16335952. Wouters MM, Neefs JM, Kerchove d'Exaerde A, et ...
Andersen JS, Lam YW, Leung AK, Ong SE, Lyon CE, Lamond AI, Mann M (January 2005). "Nucleolar proteome dynamics". Nature. 433 ( ...
Kim JE, Tannenbaum SR, White FM (2005). "Global phosphoproteome of HT-29 human colon adenocarcinoma cells". J. Proteome Res. 4 ...
"HUPOST The newsletter of the Human Proteome Organisation" (PDF). Human Proteome Organization. Archived (PDF) from the original ... She participated in the Human Proteome Project, the SysteMHC Atlas project, and the Minimum Information Required for a ... Costello served as the president of the American Society for Mass Spectrometry (2002-2004), the Human Proteome Organization ( ... Spectrometry Foundation Thomson Medal 2008 Human Proteome Organization Discovery in Proteomic Sciences Award US Human Proteome ...