Software like FINDMITE use sequence entries of some average sized bp to identify MITE families. A MATLAB-based program called ... Miniature Inverted-repeat Transposable Elements (MITEs) are a group of non-autonomous Class II transposable elements (DNA ... Lu C, Chen J, Zhang Y, Hu Q, Su W, Kuang H (March 2012). "Miniature inverted-repeat transposable elements (MITEs) have been ... MITEs are generally short (50 to 500 bp) elements with terminal inverted repeats (TIRs; 10-15 bp) and two flanking target site ...

Käss E, Wink M (1996). "Molecular evolution of the Leguminosae: Phylogeny of the three subfamilies based on rbcL-sequences". ... The clade is characterized by the loss of one of the two 25-kb inverted repeats in the plastid genome that are found in most ... The inverted repeat-lacking clade (IRLC) is a monophyletic clade of the flowering plant subfamily Faboideae (or Papilionaceae ... Liston A. (1995). "Use of the polymerase chain reaction to survey for the loss of the inverted repeat in the legume chloroplast ...

Both inverted repeats and direct repeats constitute types of nucleotide sequences that occur repetitively. These repeated DNA ... Searches can be performed on a variety of "repeat types" (including inverted repeats) and on several species. Inverted Repeats ... is an inverted repeat sequence. When the intervening length is zero, the composite sequence is a palindromic sequence. ... Repeat sequences with about 10-100 base pairs are known as minisatellites, while shorter repeat sequences having mostly 2-4 ...

Inverted repeats occur when a nucleotide sequence is repeated in the inverse direction. For example, a direct repeat of "CATCAT ... as well as the number of times the sequence repeats. When the repeating sequence is only 2-10 nucleotides long, the repeat is ... Tandem repeats are repeated sequences which are directly adjacent to each other in the genome. Tandem repeats may vary in the ... Repeated sequences (also known as repetitive elements, repeating units or repeats) are short or long patterns of nucleic acids ...

... presence of a long inverted repeat". Gene. 72 (1-2): 105-8. doi:10.1016/0378-1119(88)90131-X. PMID 3243428. Hann SR, King MW, ... Finver SN, Nishikura K, Finger LR, Haluska FG, Finan J, Nowell PC, Croce CM (May 1988). "Sequence analysis of the Myc oncogene ... Finver SN, Nishikura K, Finger LR, Haluska FG, Finan J, Nowell PC, Croce CM (May 1988). "Sequence analysis of the MYC oncogene ... Blackwood EM, Eisenman RN (March 1991). "Max: a helix-loop-helix zipper protein that forms a sequence-specific DNA-binding ...

The inverted terminal repeat (ITR) sequences comprise 145 bases each. They were named so because of their symmetry, which was ... "Sequence and symmetry requirements within the internal palindromic sequences of the adeno-associated virus terminal repeat". ... The desired gene together with a promoter to drive transcription of the gene is inserted between the inverted terminal repeats ... A few research groups have identified a sequence designated cis-acting Rep-dependent element (CARE) inside the coding sequence ...

"Complete Chloroplast Genome Sequence of Corroborates Structural Heterogeneity of Inverted Repeats in Wild Progenitors of ... List of sequenced eukaryotic genomes List of sequenced bacterial genomes List of sequenced archaeal genomes Genome skimming ... Blazier JC, Jansen RK, Mower JP, Govindu M, Zhang J, Weng ML, Ruhlman TA (June 2016). "Variable presence of the inverted repeat ... phylogenetic signal in inverted repeat expansion, pseudogenization, and intron gain" (PDF). American Journal of Botany. 100 (3 ...

It is made up of inverted repeat sequences GCAG and CTGC. tRNALys1,2 is the reverse transcriptase primer for ENVT. The U3 ... He Y, Zhang Q, Wang J, Zhou M, Fu M, Xu X (July 2017). "Full-length genome sequence analysis of enzootic nasal tumor virus ... Cousens C, Minguijon E, Dalziel RG, Ortin A, Garcia M, Park J, Gonzalez L, Sharp JM, de las Heras M. Complete Sequence of ... Walsh SR, Linnerth-Petrik NM, Laporte AN, Menzies PI, Foster RA, Wootton SK (July 2010). "Full-length genome sequence analysis ...

... which is flanked by inverted repeat sequences. The transposase excises the sequence and reintegrates it elsewhere in the genome ... A conserved non-coding sequence (CNS) is a DNA sequence of noncoding DNA that is evolutionarily conserved. These sequences are ... the distinction between regions with a high degree of sequence conservation and those with perfect sequence conservation is not ... since closer relatives have sequence conservation among nonfunctional elements as well. Orthologues with high sequence ...

... tandem repeat sequences) are repeated copies which lie adjacent to each other. These can also be direct or inverted repeats.[ ... Flanking (or terminal) repeats (terminal repeat sequences) are sequences that are repeated on both ends of a sequence, for ... Direct repeats are a type of genetic sequence that consists of two or more repeats of a specific sequence. In other words, the ... Inverted repeat Ussery, David W.; Wassenaar, Trudy; Borini, Stefano (2008-12-22). "Word Frequencies, Repeats, and Repeat- ...

The coding region in an insertion sequence is usually flanked by inverted repeats. For example, the well-known IS911 (1250 bp) ... The resolvase is part of the tns genome and cuts at flanking inverted repeats. Transposition frequency of IS elements is ... Insertion element (also known as an IS, an insertion sequence element, or an IS element) is a short DNA sequence that acts as a ... Although insertion sequences are usually discussed in the context of prokaryotic genomes, certain eukaryotic DNA sequences ...

The 340 amino acid SB protein recognizes inverted terminal repeats (ITRs) that flank the transposon; it binds to these ... Rat Genome Sequencing Project Consortium, Genome sequence of the brown rat yields insights into mammalian evolution. Nature, ... PB transposase specifically recognizes PB inverted terminal repeats (ITRs) that flank the transposon; it binds to these ... Mouse Genome Sequencing Consortium, Initial sequencing and comparative analysis of the mouse genome. Nature, 2002. 420(6915): p ...

The formation of cruciform DNA requires the presence of palindromes called inverted repeat sequences. These inverted repeats ... and cruciform forming sequences. p53 binding correlates with inverted repeat sequences, such as the ones that help form ... The inverted repeat sequences in these plasmids displayed nicks on the DNA strand which led to linearization of the plasmid. ... Inverted repeat sequences were also observed in pLAT75 in vivo. pLAT75 is derived from pBR322 (found in Escherichia coli) after ...

Hin functions by binding to two 26bp imperfect inverted repeat sequences as a homodimer. These hin binding sites flank the ... Hin functions to invert a 900 base pair (bp) DNA segment within the salmonella genome that contains a promoter for downstream ... The initial reaction requires binding of Hin and Fis to their respective DNA sequences and assemble into a higher-order ...

Palmer JD, Thompson WF (June 1982). "Chloroplast DNA rearrangements are more frequent when a large inverted repeat sequence is ... The inverted repeat regions are highly conserved among land plants, and accumulate few mutations. Similar inverted repeats ... The inverted repeats vary wildly in length, ranging from 4,000 to 25,000 base pairs long each. Inverted repeats in plants tend ... like the red alga Porphyra flipped one of its inverted repeats (making them direct repeats). It is possible that the inverted ...

The operator site where repressor binds is a DNA sequence with inverted repeat symmetry. The two DNA half-sites of the operator ... Additionally, there is an abundance of non-specific DNA sequences to which the repressor can bind. Essentially, any sequence ... The DNA sequence of the E. coli lac operon, the lacZYA mRNA, and the lacI genes are available from GenBank (view). The first ... The non-specific sequences decrease the amount of available repressor in the cell. This in turn reduces the amount of inducer ...

Palmer JD, Thompson WF (June 1982). "Chloroplast DNA rearrangements are more frequent when a large inverted repeat sequence is ... The inverted repeat regions are highly conserved among land plants, and accumulate few mutations. Similar inverted repeats ... making them direct repeats). It is possible that the inverted repeats help stabilize the rest of the chloroplast genome, as ... The inverted repeats vary wildly in length, ranging from 4,000 to 25,000 base pairs long each and containing as few as four or ...

The sites consist of 6bp inverted repeat motifs flanking a central sequence of variable length. These motifs act as binding ... The transposon is flanked by a pair of 38bp inverted repeats. This first stage is catalysed by transposase. The plasmid ... At recombination, two directly repeated res sites with resolvase dimers bound to each sub-site, come together to form a large ... Akopian A, He J, Boocock MR, Stark WM (July 2003). "Chimeric recombinases with designed DNA sequence recognition". Proc. Natl. ...

An inverted repeat sequence: signals the end of replication of donor DNA and is responsible for transfer frequency, plasmid ... AT-rich region: important for DNA strand opening and is located adjacent to the inverted repeat sequences. The oriT is a ... Once the relaxase reaches the upstream section of the oriT again where there is an inverted repeat, the process is terminated ... Various oriT regions in plasmid DNA contain inverted repeats onto which relaxase proteins are able bind. Major contributors of ...

For example, some RNA Polymerase II (Pol II) transcripts that contain an inverted repeat sequence form double-stranded hairpin ... Additionally, some Pol II transcripts contain inverted repeat sequences, which can form double-stranded hairpin-like structures ... Hairpin RNAs contain an inverted repeat, which causes the RNA molecule to form a double-stranded RNA (dsRNA) structure called ... Zhang W, Kollwig G, Stecyk E, Apelt F, Dirks R, Kragler F (October 2014). "Graft-transmissible movement of inverted-repeat- ...

Tandem direct repeat sequences are prevalent throughout a Borg's genome, and long inverted repeats terminate the genome. This ... Schoelmerich MC, Sachdeva R, West-Roberts J, Waldburger L, Banfield JF (January 2023). "Tandem repeats in giant archaeal Borg ... Pennisi E (15 July 2021). "Mysterious DNA sequences, known as 'Borgs,'recovered from California mud". Science. Rayne E (2021-08 ... Borgs are long DNA sequences existing alongside the main chromosome in the archaea Methanoperedens, in oxygen-starved ...

This relationship is affected by certain sequence features such as frame shifts, direct repeats, and inverted repeats. Frame ... Note, that the sequences can be written backwards or forwards, however the sequences on both axes must be written in the same ... Dot plots compare two sequences by organizing one sequence on the x-axis, and another on the y-axis, of a plot. When the ... a Method for Comparing Sequences. Its Use with Amino Acid and Nucleotide Sequences". Eur. J. Biochem. 16 (1): 1-11. doi:10.1111 ...

The linear genome is flanked by inverted terminal repeat (ITR) sequences which are covalently-closed at their extremities. ... sequencing and comparisons of isolated DNA were conducted. Results demonstrated that the red deer isolates are closely related ...

In the genome, SRY is flanked by long inverted repeats (IRs) over 15.5 kilobases (kb) in length. When one or both of the IRs ... Liang D, Wilusz JE (October 2014). "Short intronic repeat sequences facilitate circular RNA production". Genes & Development. ... Compared to regions not resulting in circles, these introns are much more likely to contain complementary inverted Alu repeats ... Dubin RA, Kazmi MA, Ostrer H (December 1995). "Inverted repeats are necessary for circularization of the mouse testis Sry ...

The chloroplast genome sequence is 152,189 bp in size, and contains 131 genes. It includes a pair of 25,387 bp inverted repeats ...

All −ssRNA genomes contain terminal inverted repeats, which are palindromic nucleotide sequences at each end of the genome. ... At the leader sequence, RdRp synthesizes a 5-'end (usually pronounced "five prime end") triphosphate-leader RNA and either, in ... As new nucleotide sequences are synthesized by RdRp, capsid proteins are assembled and encapsidate the newly replicate viral ... Replication of −ssRNA genomes is executed by RdRp, which initiates replication by binding to a leader sequence on the 3'-end ( ...

Dyad symmetry Inverted repeat Kissing stem-loop Palindromic sequence Repeat sequences Satellite DNA 5'UTR Svoboda, P., & Cara, ... This process is known as rho-independent or intrinsic termination, and the sequences involved are called terminator sequences. ... The first prerequisite is the presence of a sequence that can fold back on itself to form a paired double helix. The stability ... One common loop with the sequence UUCG is known as the "tetraloop" and is particularly stable due to the base-stacking ...

... flanking the elt genes provide extra transmission capabilities by homologous recombination at their inverted repeats. Οβ phage- ... Partial insertion sequences (ISs) ...

... sequences contain terminal inverted repeats characteristic of transposable elements, usually on the order of 100-1000 ... They also possess a 6bp target site duplication sequence at the insertion site. Polintons have been detected in all groups of ... Phylogenetic analyses of known polinton sequences support this ancestry model and suggest that transmission of polintons is ... The first descriptions of polintons linked them by sequence relationship to linear plasmids, bacteriophages, and adenoviruses. ...

Examples of the DNA sequences that are difficult to clone are inverted repeats, origins of replication, centromeres and ... The idea arose that different DNA sequences could be inserted into a plasmid and that these foreign sequences would be carried ... while synthetic DNA is used to obtain any precise sequence defined by the designer. Such a designed sequence may be required ... vector DNA with no recombinant sequence inserted). In these vectors, foreign DNA is inserted into a sequence that encodes an ...