Chromatin immunoprecipitation
Wikimedia Commons has media related to Chromatin immunoprecipitation. Chromatin+immunoprecipitation at the U.S. National ... Nelson J, Denisenko O, Bomsztyk K (2009). "The Fast Chromatin Immunoprecipitation Method". Chromatin Immunoprecipitation Assays ... Chromatin Immunoprecipitation for Small Cell Numbers". Chromatin Immunoprecipitation Assays. Methods in Molecular Biology. Vol ... Chromatin immunoprecipitation (ChIP) is a type of immunoprecipitation experimental technique used to investigate the ...
Regulome
Chromatin immunoprecipitation of transcription factors can be used to map transcription factor binding sites in the genome. ... Collas, Philippe (May 2010). "The Current State of Chromatin Immunoprecipitation". Molecular Biotechnology. 45 (1): 87-100. doi ...
Mammalian promoter database
"Isolating human transcription factor targets by coupling chromatin immunoprecipitation". Genes Dev. 16 (2): 235-244. doi: ...
Biotinylation
"Use of protein biotinylation in vivo for chromatin immunoprecipitation". Analytical Biochemistry. 325 (1): 68-76. doi:10.1016/j ... approach to study chromatin in proximity to a protein of interest". Genome Research. 23 (2): 331-40. doi:10.1101/gr.134874.111 ...
Tiling array
Chromatin immunoprecipitation allows binding sites of proteins to be identified. A genome-wide variation of this is known as ... Proteins that bind to chromatin are cross-linked in vivo, usually via fixation with formaldehyde. The chromatin is then ... Methyl-DNA immunoprecipitation followed by tiling array allows DNA methylation mapping and measurement across the genome. DNA ... segments of open chromatin that are more readily cleaved by DNaseI. DNaseI cleaving produces larger fragments of around 1.2kb ...
Cellular differentiation
This can be determined using a chromatin immunoprecipitation (ChIP) assay. DNA-nucleosome interactions are characterized by two ... "Chromatin Immuprecipitation". www.bio.brandeis.edu. Krogan NJ, Dover J, Wood A, Schneider J, Heidt J, Boateng MA, Dean K, Ryan ... 2013). "Genome-wide chromatin state transitions associated with developmental and environmental cues". Cell. 152 (3): 642-654. ... It is thought that they achieve this through alterations in chromatin structure, such as histone modification and DNA ...
SUZ12
Weinmann AS, Bartley SM, Zhang T, Zhang MQ, Farnham PJ (October 2001). "Use of chromatin immunoprecipitation to clone novel E2F ... SUZ12, as part of Polycomb Repressive Complex 2 (PRC2), may be involved with chromatin silencing in conjunction with HOTAIR ... "Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs". Cell. 129 (7): 1311-23. doi ...
BECN1
Weinmann AS, Bartley SM, Zhang T, Zhang MQ, Farnham PJ (October 2001). "Use of chromatin immunoprecipitation to clone novel E2F ...
Chromosome conformation capture
In 1984, John T. Lis innovated the Chromatin immunoprecipitation technique. In 1993, the Nuclear Ligation Assay was published, ... In 1879, Walther Flemming coined the term chromatin.[citation needed] In 1883, August Weismann connected chromatin with ... Chromatin Immunoprecipitation Assays. review. Methods in Molecular Biology. Vol. 567. pp. 171-88. doi:10.1007/978-1-60327-414-2 ... In 1973/1974, chromatin fiber was discovered. In 1975, Pierre Chambon coined the term nucleosomes. In 1982, Chromosome ...
ChIP-on-chip
Weinmann, A. S.; Bartley, S. M.; Zhang, T.; Zhang, M. Q.; Farnham, P. J. (2001). "Use of chromatin immunoprecipitation to clone ... ChIP-on-chip (also known as ChIP-chip) is a technology that combines chromatin immunoprecipitation ('ChIP') with DNA microarray ... Introduced in 2007, ChIP sequencing (ChIP-seq) is a technology that uses chromatin immunoprecipitation to crosslink the ... Aparicio, O; Geisberg, JV; Struhl, K (2004). Chromatin immunoprecipitation for determining the association of proteins with ...
ATAC-seq
Chromatin Immunoprecipitation. Methods in Molecular Biology. Vol. 1689. pp. 83-101. doi:10.1007/978-1-4939-7380-4_8. ISBN 978-1 ... Bajic M, Maher KA, Deal RB (2018). "Identification of Open Chromatin Regions in Plant Genomes Using ATAC-Seq". Plant Chromatin ... "Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and ... Open chromatin regions can be defined, for example, by standard peak calling of pseudo bulk ATAC-seq data. Further steps ...
Staphylococcus aureus
Sengupta M, Jain V, Wilkinson BJ, Jayaswal RK (June 2012). "Chromatin immunoprecipitation identifies genes under direct VraSR ...
ChIP-exo
Chromatin immunoprecipitation (ChIP) techniques have been in use since 1984 to detect protein-DNA interactions. There have been ... Chromatin immunoprecipitation Chip-sequencing ChIP-on-chip Protein-DNA interaction Gilmour, DS; JT Lis (1983). "Detecting ... ChIP-exo is a chromatin immunoprecipitation based method for mapping the locations at which a protein of interest ( ... Cells are then collected, broken open, and the chromatin sheared and solubilized by sonication. An antibody is then used to ...
CCDC188
Chromatin-immunoprecipitation analysis confirms p53 binding to the promoter region of CCDC188. Significantly repressed CCDC188 ...
Eileen Furlong
Chromatin immunoprecipitation (ChIP) in embryos, tissue specific and single cell approaches - which combined with genetic ... "Cell type-specific chromatin immunoprecipitation from multicellular complex samples using BiTS-ChIP". Nature Protocols. 7 (5): ... Eileen E. M. Furlong FRS MAE is an Irish molecular biologist working in the fields of transcription, chromatin biology, ... "EMBL Conference - from Functional Genomics to Systems Biology -". "14th EMBL Conference - Transcription and Chromatin - Virtual ...
Pseudo-response regulator
Chromatin immunoprecipitation demonstrates that LUX binds to the PRR9 promoter to repress it. Additionally, ELF3 has been shown ...
ChIP sequencing
ChIP-seq combines chromatin immunoprecipitation (ChIP) with massively parallel DNA sequencing to identify the binding sites of ... The third step is called chromatin immunoprecipitation, which is what ChIP is short for. The ChIP process enhances specific ... August 2007). "Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel ... The second step is the process of chromatin fragmentation which breaks up the chromatin in order to get high quality DNA pieces ...
E2F3
"Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis". ...
CBX5 (gene)
"Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis". ... interaction between chromatin assembly factor 1 and HP1 proteins". Molecular Cell. 4 (4): 529-40. doi:10.1016/S1097-2765(00) ... as well as interacting with a variety of chromatin-associated, non-histone proteins. HP1α is 191 amino acids in length ... while the C-terminal CSD homodimerizes and interacts with a variety of other chromatin-associated, non-histone related proteins ...
E2F2
"Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis". ...
FAM227B
Hearnes JM, Mays DJ, Schavolt KL, Tang L, Jiang X, Pietenpol JA (November 2005). "Chromatin immunoprecipitation-based screen to ... Knocking down LOXL2 results in lower levels of H3K4ox, resulting in chromatin decompaction, thus continuing activation of DNA ... January 2020). "LOXL2-mediated H3K4 oxidation reduces chromatin accessibility in triple-negative breast cancer cells". Oncogene ...
Michael P. Snyder
"Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing - PubMed". ...
GAS2L1
2002). "Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray ...
HIST2H4A
2002). "Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray ... 2003). "Acetylation-dependent chromatin reorganization by BRDT, a testis-specific bromodomain-containing protein". Mol. Cell. ... 2001). "Enhancement of the p300 HAT activity by HIV-1 Tat on chromatin DNA". Virology. 289 (2): 312-26. doi:10.1006/viro. ... 2004). "Identification of chromatin-related protein interactions using protein microarrays". Proteomics. 3 (11): 2101-7. doi: ...
CSDA (gene)
2002). "Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray ...
Transcription factor
The most commonly used method for identifying transcription factor binding sites is chromatin immunoprecipitation (ChIP). This ... Teif VB, Rippe K (October 2010). "Statistical-mechanical lattice models for protein-DNA binding in chromatin". Journal of ... For most other transcription factors, the nucleosome should be actively unwound by molecular motors such as chromatin ... Narlikar GJ, Fan HY, Kingston RE (February 2002). "Cooperation between complexes that regulate chromatin structure and ...
HIST1H2BJ
2002). "Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray ... The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher ... 2001). "Enhancement of the p300 HAT activity by HIV-1 Tat on chromatin DNA". Virology. 289 (2): 312-326. doi:10.1006/viro. ... El Kharroubi A, Piras G, Zensen R, Martin MA (1998). "Transcriptional activation of the integrated chromatin-associated human ...
RECQL
2002). "Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray ...
HIST1H2AG
2002). "Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray ... The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher ... 2001). "Enhancement of the p300 HAT activity by HIV-1 Tat on chromatin DNA". Virology. 289 (2): 312-26. doi:10.1006/viro. ... El Kharroubi A, Piras G, Zensen R, Martin MA (1998). "Transcriptional activation of the integrated chromatin-associated human ...
MFAP1
2002). "Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray ...