*  Evolutionary insights from de novo transcriptome assembly and SNP discovery in California white oaks | BMC Genomics | Full Text
Further indications of transcriptome quality and purity appear below.. Repeats and transposons. Only 4.4 % of the transcriptome ... Additional file 1: Transcriptome size and coverage per contig. (a) Total transcriptome size in base pairs (red) and number of ... Our transcriptome assembly is of high quality and purity. First, almost all 100-mers in almost all transcriptome contigs are ... We used our transcriptome-wide SNPs to estimate the ratio of nonsynonymous to synonymous substitution rates (d N/d S) as ...
  https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-015-1761-4
*  Transplex Whole Transcriptome Amplification (WTA) Kits | China-Mainland | Sigma-Aldrich
The TransPlex Whole Transcriptome Amplification (WTA) Kits provide a simple, fast and accurate method of amplifying total RNA ... Complete Whole Transcriptome Amplification (WTA) Kit. 10 reactions. WTA2-50RXN. Complete Whole Transcriptome Amplification (WTA ... TransPlex Whole Transcriptome Amplification (WTA) Kit. 10 reactions. WTA1-50RXN. TransPlex Whole Transcriptome Amplification ( ... The TransPlex Whole Transcriptome Amplification (WTA1) and the Complete Whole Transcriptome Amplification Kit (WTA2) provide an ...
  https://www.sigmaaldrich.com/china-mainland/zh/life-science/molecular-biology/whole-genome-amplification/whole-transcriptome.html
*  TransRate: reference-free quality assessment of de novo transcriptome assemblies. - Oxford Neuroscience
Using only the sequenced reads and the assembly as input, we show that multiple common artifacts of de novo transcriptome ... Applying the method to a data set of 155 published de novo transcriptome assemblies, we deconstruct the contribution that ... of the variance in the quality of published de novo transcriptome assemblies. Because TransRate is reference-free, it is ... assembly method, read length, read quantity, and read quality make to the accuracy of de novo transcriptome assemblies and ...
  https://www.neuroscience.ox.ac.uk/publications/628076
*  Trinity - a method for de novo assembly of full-length transcripts | RNA-Seq Blog
2011) Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nature Biotechnology . ... Compared with other de novo transcriptome assemblers, Trinity recovers more full-length transcripts across a broad range of ... This approach provides a unified solution for transcriptome reconstruction in any sample, especially in the absence of a ... Massively parallel sequencing of cDNA has enabled deep and efficient probing of transcriptomes. Current approaches for ...
  http://www.rna-seqblog.com/trinity-a-method-for-de-novo-assembly-of-full-length-transcripts/
*  SOAPdenovo-Trans: De novo transcriptome assembly with short RNA-Seq reads. | RNA-Seq Blog
They evaluated its performance on transcriptome datasets from rice and mouse. Using as their benchmarks the known transcripts ... Here, researchers from BGI Shenzhen, present SOAPdenovo-Trans, a de novo transcriptome assembler designed specifically for RNA- ... they assessed how SOAPdenovo-Trans and two other popular transcriptome assemblers handled such practical issues as alternative ... De novo transcriptome assembly with short RNA-Seq reads. Bioinformatics . ...
  http://www.rna-seqblog.com/soapdenovo-trans-de-novo-transcriptome-assembly-with-short-rna-seq-reads-2/
*  Ion Torrent™ Transcriptome Profiling Grant Program | Thermo Fisher Scientific - DE
Thermo Fisher Scientific and our Transcriptome-Certified Service Providers are pleased to offer the Ion Torrent™ Transcriptome ... "The Ion AmpliSeq™ Transcriptome technology is a very useful tool for any group analyzing low input or FFPE samples using RNA- ... Special thanks to our co-sponsors and transcriptome-certified service provider partners:. ... Each grant will include the processing of up to 24 samples using the Ion AmpliSeq™ Transcriptome Human Gene Expression Kit on ...
  http://www.thermofisher.com/de/de/home/products-and-services/promotions/transcriptome-profiling-grant-program.html
*  Comparison of Muscle Transcriptome between Pigs with Divergent Meat Quality Phenotypes Identifies Genes Related to Muscle...
Comparison of Muscle Transcriptome between Pigs with Divergent Meat Quality Phenotypes Identifies Genes Related to Muscle ... Therefore, a muscle transcriptome analysis was undertaken to compare gene expression profiles between two highly contrasted pig ... Comparison of Muscle Transcriptome between Pigs with Divergent Meat Quality Phenotypes Identifies Genes Related to Muscle ... Comparison of Muscle Transcriptome between Pigs with Divergent Meat Quality Phenotypes Identifies Genes Related to Muscle ...
  http://libros.duhnnae.com/2017/jun7/14981228680-Comparison-of-Muscle-Transcriptome-between-Pigs-with-Divergent-Meat-Quality-Phenotypes-Identifies-Genes-Related-to-Muscle-Metabolism-and-Structure.php
*  Transcriptome - Wikipedia
Transcriptomes may also be used to infer phylogenetic relationships among individuals. The transcriptome can be seen as a ... The transcriptome is the set of all RNA molecules in one cell or a population of cells. It is sometimes used to refer to all ... Analysis of the transcriptomes of human oocytes and embryos is used to understand the molecular mechanisms and signaling ... RNA-seq is emerging (2013) as the method of choice for measuring transcriptomes of organisms, though the older technique of DNA ...
  https://en.wikipedia.org/wiki/Transcriptome
*  Transcriptome instability - Wikipedia
... a phenomenon referred to as transcriptome instability. Transcriptome instability correlates significantly with reduced ... Transcriptome instability is a genome-wide, pre-mRNA splicing-related characteristic of certain cancers. In general, pre-mRNA ... "A Global View of Cancer-Specific Transcript Variants by Subtractive Transcriptome-Wide Analysis". PLoS ONE. 4 (3): e4732. doi: ... Sveen, A; Ågesen, TH; Nesbakken, A; Rognum, TO; Lothe, RA; Skotheim, RI (2011). "Transcriptome instability in colorectal cancer ...
  https://en.wikipedia.org/wiki/Transcriptome_instability
*  transcriptome - Wiktionary
transcriptome (plural transcriptomes). *(biochemistry, genetics) The complete set of RNA molecules (transcripts) produced in a ... Retrieved from "https://en.wiktionary.org/w/index.php?title=transcriptome&oldid=46803573" ...
  https://en.wiktionary.org/wiki/transcriptome
*  Digital transcriptome subtraction - Wikipedia
Digital transcriptome subtraction (DTS) is a bioinformatics method to detect the presence of novel pathogen transcripts through ... Feng H, Taylor JL, Benos PV, Newton R, Waddell K, Lucas SB, Chang Y, Moore PS (August 2007). "Human Transcriptome Subtraction ... Must have a highly reliable, complete reference transcriptome for the organism being studied. Lack of foreign sequence ... "New Pathogen Discovery: Digital Transcriptome Subtraction". Retrieved 1 March 2012. Cox-Foster DL, Conlan S, Holmes EC, ...
  https://en.wikipedia.org/wiki/Digital_transcriptome_subtraction
*  De novo transcriptome assembly - Wikipedia
De novo transcriptome assembly is the de novo sequence assembly method of creating a transcriptome without the aid of a ... 2011). "Reptilian transcriptome v1.0, a glimpse in the brain transcriptome of five divergent Sauropsida lineages and the ... Transcriptome Transcriptomics Human-transcriptome database for alternative splicing (H-DBAS) UniGene Full-parasites Exome ... SeqMan NGen, part of DNASTAR's software pipeline, includes a de novo transcriptome assembler for small or large transcriptome ...
  https://en.wikipedia.org/wiki/De_novo_transcriptome_assembly
*  transcriptome sequencing - Genetic Future
transcriptome sequencing. Genetic Future. Category archives for transcriptome sequencing. Using new sequencing technology to ...
  http://scienceblogs.com/geneticfuture/category/transcriptome_sequencing/
*  Transcriptome in vivo analysis tag - Wikipedia
The transcriptome is a set of all RNA, including rRNA, mRNA, tRNA, and non-coding RNA. Specifically mRNA transcripts can be ... A transcriptome in vivo analysis tag (TIVA tag) is a multifunctional, photoactivatable mRNA-capture molecule designed for ... February 2014). "Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue". Nat. Methods. 11 (2 ... Transcriptome profiling is determining the composition of transcripts and their relative expression levels in a given reference ...
  https://en.wikipedia.org/wiki/Transcriptome_in_vivo_analysis_tag
*  Human-transcriptome database for alternative splicing - Wikipedia
The Human-transcriptome DataBase for Alternative Splicing (H-DBAS) is a database of alternatively spliced human transcripts ...
  https://en.wikipedia.org/wiki/Human-transcriptome_database_for_alternative_splicing
*  Transcriptome Sequencing (RNA-Seq) | SpringerLink
Transcriptome sequencing (RNA-Seq) is a recently developed... ... The transcriptome is the entire assembly of RNA transcripts in ... Transcriptome sequencing to detect gene fusions in cancer. Nature. 2009;458(7234):97-101.PubMedPubMedCentralGoogle Scholar ... Studying bacterial transcriptomes using RNA-seq. Curr Opin Microbiol. 2010;13(5):619-24.PubMedPubMedCentralGoogle Scholar ... Chromosomal instability and transcriptome dynamics in cancer. Cancer Metastasis Rev. 2013;32(3-4):391-402.PubMedGoogle Scholar ...
  https://link.springer.com/chapter/10.1007/978-1-4939-0727-4_3
*  The tammar wallaby genome and transcriptome
... The tammar wallaby (Macropus eugenii) is a kangaroo species native to islands ... international Tammar Wallaby Genome Sequencing Consortium present the tammar wallaby genome and transcriptome sequences. These ...
  https://www.biomedcentral.com/collections/tammarwallaby
*  Transcriptome-wide profiling and expression ana...
Transcriptome analysis shows similarity of expression patterns for all plants exposed to nanoparticles and a low impact on gene ... De novo Transcriptome Sequencing and Development of Abscission Zone-Specific Microarray as a New Molecular Tool for Analysis of ... We performed whole transcriptome analyses of chickpea genotypes to investigate the molecular basis of drought and salinity ... In the grapevine transcriptome, during the initial stages of leaf development 1Avs2A showed single transcript was down- ...
  https://www.scoop.it/t/plant-genomics/p/4013279010/2013/12/26/transcriptome-wide-profiling-and-expression-analysis-of-transcription-factor-families-in-a-liverwort-marchantia-polymorpha
*  Transcriptome - definition of transcriptome by The Free Dictionary
transcriptome synonyms, transcriptome pronunciation, transcriptome translation, English dictionary definition of transcriptome ... transcriptome. Also found in: Medical, Wikipedia.. Related to transcriptome: gene expression. transcriptome. (trænˈskrɪptəʊm) n ... In the present study, we re-assembled the transcriptome datasets of B.. Comparative transcriptome analysis of three Bactrocera ... Transcriptome - definition of transcriptome by The Free Dictionary https://www.thefreedictionary.com/transcriptome ...
  https://www.thefreedictionary.com/Transcriptome
*  Single-cell transcriptome analysis of endometrial tissue. - PubMed - NCBI
Single-cell transcriptome analysis of endometrial tissue.. Krjutškov K1, Katayama S2, Saare M3, Vera-Rodriguez M4, Lubenets D5 ... Although single-cell transcriptome analyses from various biopsied tissues have been published recently, corresponding protocols ... How can we study the full transcriptome of endometrial stromal and epithelial cells at the single-cell level? ... the amount of transcriptome data per individual epithelial cell was low, complicating further analysis. This step most likely ...
  https://www.ncbi.nlm.nih.gov/pubmed/26874359
*  Glycome and Transcriptome Regulation of Vasculogenesis | Circulation
Glycome and Transcriptome Regulation of Vasculogenesis. Rania Harfouche, Dirk M. Hentschel, Stephanie Piecewicz, Sudipta Basu, ... Glycome and Transcriptome Regulation of Vasculogenesis. Rania Harfouche, Dirk M. Hentschel, Stephanie Piecewicz, Sudipta Basu, ... Glycome and Transcriptome Regulation of Vasculogenesis. Rania Harfouche, Dirk M. Hentschel, Stephanie Piecewicz, Sudipta Basu, ... Endothelial cells preparing to die by apoptosis initiate a program of transcriptome and glycome regulation. FASEB J. 2004; 18: ...
  http://circ.ahajournals.org/content/120/19/1883
*  Brain Transcriptome | 9780128011058 | VitalSource
Buy or Rent Brain Transcriptome as an eTextbook and get instant access. With VitalSource, you can save up to 80% compared to ... Brain Transcriptome Edition by Hitzemann, Robert and Publisher Academic Press. Save up to 80% by choosing the eTextbook option ...
  https://www.vitalsource.com/products/brain-transcriptome-hitzemann-robert-v9780128011058
*  EMBL Course - Whole Transcriptome Data Analysis
The course participants will use open-source software. R-coding skills and deep knowledge of statistics are not necessary for attendance because most analyses will be performed with docker4seq package, which was developed to facilitate the use of computing demanding applications in the field of NGS data analysis. Docker4seq package uses docker containers that embed demanding computing tasks (e.g. short reads mapping) into isolated containers. This approach provides multiple advantages ...
  https://www.embl.de/training/events/2017/DAT17-02/introduction/index.html
*  Gene Expression & Transcriptome Analysis & Profiling Solutions
... solutions for high-quality gene expression and transcriptome analysis and profiling studies. ... Whole-Transcriptome Analysis with Sequencing. Capture the broad effects of gene expression changes using whole-transcriptome ... Comprehensive Transcriptome and Gene Expression Analysis. Transcriptome analysis experiments can characterize transcriptional ... AmpliSeq for Illumina Transcriptome Human Gene Expression Panel. Targeted research panel that measures expression levels of , ...
  https://www.illumina.com/techniques/popular-applications/gene-expression-transcriptome-analysis.html