*  Center for Theoretical & Mathematical Sciences » People
Sequence Homology, Nucleic Acid • Serine • Serotonin • Serotonin Plasma Membrane Transport Proteins • Serotonin Receptor ... Folic Acid • Folic Acid Deficiency • Food • Food Deprivation • Formate-Tetrahydrofolate Ligase • Gene Expression • Gene ... Abdomen • Abscisic Acid • Acetaminophen • Acetylcholinesterase • Actins • Action Potentials • Adaptation, Biological • ... Pyrrolidonecarboxylic Acid • Quantitative Trait Loci • Quantitative Trait, Heritable • Raphe Nuclei • Rats • Receptor, Insulin ...
  http://fds.duke.edu/db/aas/math/ctms/faculty/hfn
*  Rhabdomyosarcoma | Cancer Genetics Web
Sequence Homology, Nucleic Acid. *DUX4. *p53 Protein. *MDM2. *Cancer Gene Expression Regulation ... Using a luciferase reporting system and sequence analysis, the potential target of miR-411-5p was identified as sprouty homolog ... Here we studied 60 RMSs using whole-exome/-transcriptome sequencing, copy number (CN) and DNA methylome analyses to unravel the ... Given that the Pax3-Foxo1 fusion gene will contain all the regulatory sequences necessary for precise regulation of its ...
  http://www.cancerindex.org/geneweb/X2002.htm
*  COL4A2 | Cancer Genetics Web
Molecular Sequence Data. *RNA. *Sequence Homology, Nucleic Acid. *Peptide Fragments. *Biomarkers, Tumor ... Multiplexed amplicon sequencing of PCR products from bisulfite-treated DNA of matched CRC and non-neoplastic tissue as well as ... Because there is no data available about the transcription factors which bind to ING1 promoter, the promoter sequence was ... qMSP assays were developed for 32 genes, including 15 of the sequenced genes, and used to quantify methylation in tumor, ...
  http://www.cancerindex.org/geneweb/COL4A2.htm
*  Monophyletic origin and unique dispersal patterns of domestic fowls.
... we have determined mtDNA sequences of the D-loop regions for a total of 21 birds, of which 12 samples belong to red junglefowl ... Molecular Sequence Data. Multigene Family. Phylogeny*. Poultry / genetics*. Sequence Homology, Nucleic Acid. Species ... Base Sequence. Birds / genetics. Coturnix / genetics. DNA, Mitochondrial. ... we have determined mtDNA sequences of the D-loop regions for a total of 21 birds, of which 12 samples belong to red junglefowl ...
  http://www.biomedsearch.com/nih/Monophyletic-origin-unique-dispersal-patterns/8692897.html
*  DAPK2 | Cancer Genetics Web
Sequence Homology, Nucleic Acid. *CDC42. *Ubiquitin-Protein Ligases. *Messenger RNA. *Polymerase Chain Reaction ... Activation of fatty acid synthase (FASN) enzyme in the de novo lipogenic pathway has been reported in various cancers including ... MS-HRM methods for CCND2, MGMT and RASSF1A were developed in-house, primer sequences for DAPK1, GSTP1 and HIN-1 have already ... fatty acid metabolism, gene transcription, histone methylation, iron transport, stress response, cell cycle, and apoptosis.. ...
  http://www.cancerindex.org/geneweb/DAPK2.htm
*  anti-Cytochrome C Primary Antibodies
5' flanking region: amino acid sequence; nucleic acid sequence homology) * Tissue expression profile analysis revealed that ...
  https://www.antikoerper-online.de/apoptose-pathway-9/cytochrome-c-antibody-2985/
*  Examples of RT-PCR products on 2% agarose gel. Results | Open-i
Sequence Homology, Nucleic Acid*. *Transcriptome/drug effects*. *Werner Syndrome/genetics*. Minor. *Animals ... Such genes significantly affected the metabolism of lipid, cellular ketone, organic acid, and carboxylic acids. Vitamin C, in ... Such genes significantly affected the metabolism of lipid, cellular ketone, organic acid, and carboxylic acids. Vitamin C, in ... The RT-PCR results are shown in Table 2 and the sequences of the primers are provided in the Additional file2: Table S2. Every ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC4221712_12864_2014_6625_Fig2_HTML&req=4
*  AMFR and NOTCH1 are the direct target genes of miR-139- | Open-i
Sequence Homology, Nucleic Acid. *Survival Analysis. *Xenograft Model Antitumor Assays. Related in: MedlinePlus ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC4225484_13238_2014_93_Fig3_HTML&req=4
*  Studying RNA Homology and Conservation with Infernal: From Single Sequences to RNA Families - Current Protocols
... sequences identified in a wide variety of organisms ... Homology search with fragmented nucleic acid sequence patterns ... Nucleic Acids Res. 36:W5‐W9. doi: 10.1093/nar/gkn201.. Jossinet, F. and Westhof, E. 2005. Sequence to Structure (S2S): Display ... Nucleic Acids Res. 42:D764‐D770. doi: 10.1093/nar/gkt1168.. Katoh, K. and Standley, D.M. 2013. MAFFT multiple sequence ... Software.ncrna.org: Web servers for analyses of RNA sequences. Nucleic Acids Res. 36:W75‐W78. doi: 10.1093/nar/gkn222. ...
  http://www.currentprotocols.com/WileyCDA/CPUnit/refId-bi1213.html?quicktabs_cp=cited
*  a. PIP (percentage identity plot) diagram for human and | Open-i
The horizontal axis represents the human genomic sequence and has been annotated to show t ... Molecular Sequence Data. *Mutation/genetics. *Oocytes/chemistry/enzymology/metabolism. *Pregnancy. *Sequence Homology, Nucleic ... The horizontal axis represents the human genomic sequence and has been annotated to show the position of the novel exon 1o, ... The horizontal axis represents the human genomic sequence and has been annotated to show the position of the novel exon 1o, ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC149328_1471-2156-4-2-1&req=4
*  Patterns of gain and loss of target genes in miR1448 mi | Open-i
... of gain and loss of target genes in miR1448 miRNAs.For the four nucleotide mutations that occurred in the mature sequence of ... Molecular Sequence Data. *Multigene Family. *Oryza/genetics. *RNA Folding. *Sequence Homology, Nucleic Acid ... Mentions: Mature sequences of miR482.2 and miR1448 both target the sequences encoding the "MGGV(L)GK" peptide in the NB-ARC ... Mentions: Mature sequences of miR482.2 and miR1448 both target the sequences encoding the "MGGV(L)GK" peptide in the NB-ARC ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC3475693_pone.0047811.g006&req=4
*  The Concentric circle of Rosaceae genomes. The innermos | Open-i
Sequence Homology, Nucleic Acid. © Copyright Policy - open-access Related In: Results - Collection ... Results: Our analysis using the whole genome sequences of peach, apple and strawberry identified 1399 orthologous regions ... Results: Our analysis using the whole genome sequences of peach, apple and strawberry identified 1399 orthologous regions ... have been sequenced, allowing in-depth comparison of these genomes. ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC3368713_1471-2164-13-129-5&req=4
*  Tree reconciliation versus Mestortho. (a) Phylogenetic | Open-i
a) Phylogenetic tree reconstructed from the sequences of myoglobin, and α- and β-hemoglobins. Boxed sequences have no g ... Sequence Homology, Amino Acid*. *Sequence Homology, Nucleic Acid*. Minor. *Confidence Intervals. *DNA/chemistry ... Kim KM, Sung S, Caetano-Anollés G, Han JY, Kim H - Nucleic Acids Res. (2008) ... Kim KM, Sung S, Caetano-Anollés G, Han JY, Kim H - Nucleic Acids Res. (2008) ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC2553584_gkn485f4&req=4
*  Osteogenic differentiation of hMSCs. (A) Differentiatio | Open-i
Sequence Homology, Nucleic Acid. Related in: MedlinePlus. © Copyright Policy Related In: Results - Collection ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC3822845_jcmm0016-0740-f6&req=4
*  Methylation of hsa-miR-203. (A) U-MSP showed that the m | Open-i
Sequence Homology, Nucleic Acid. *Young Adult. Related in: MedlinePlus. © Copyright Policy Related In: Results - Collection ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC4373446_jcmm0015-2760-f1&req=4
*  Effect of nitrogen deprivation on AlaAT specific activi | Open-i
Sequence Homology, Nucleic Acid. *Transaminases/genetics/metabolism. Related in: MedlinePlus. © Copyright Policy Related In: ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC3351597_299_2012_1231_Fig10_HTML&req=4
*  Gene search result. For the queried gene all the inform | Open-i
Molecular Sequence Annotation. *Oligonucleotide Array Sequence Analysis. *Sequence Homology, Nucleic Acid. *User-Computer ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC3113790_1471-2164-12-262-4&req=4
*  PCR assays used in this study. (A) Flanking primer (FP) | Open-i
Sequence Homology, Nucleic Acid. *Sodium Chloride/pharmacology. *Tunicamycin/pharmacology. Related in: MedlinePlus ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC3369818_1756-0500-5-144-2&req=4
*  Expression profiles of the 10 genes selected for the st | Open-i
Sequence Homology, Nucleic Acid. *Stress, Physiological/genetics. Related in: MedlinePlus. © Copyright Policy Related In: ... acid stress, and osmotic stress. Mentions: Next, we required that the selected genes satisfied the following criteria: (i) they ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC3102694_pone.0020269.g002&req=4
*  Diagnosis of HIV-1 Infection in Children Younger Than 18 Months in the United States | FROM THE AMERICAN ACADEMY OF PEDIATRICS ...
... overall nucleic acid sequence homology. Otherwise, the 2 viruses share 30% to 40% homology.123 Similar to HIV-1, there are ... using nucleic acid amplification tests (NAATs [ie, tests that detect HIV-1 nucleic acids such as HIV-1 DNA or HIV-1 RNA]), and ... In the nucleic acid sequence-based amplification assay, quantitation of HIV-1 RNA is achieved with internal calibrators, which ... Methods of amplification of HIV-1 RNA include target (nucleic acid sequence-based amplification and reverse-transcriptase PCR) ...
  http://pediatrics.aappublications.org/content/120/6/e1547.full
*  ASMscience | Ecology of Bacillaceae
I. Conserved genetic and nucleic acid base sequence homologies. Proc Natl Acad Sci USA 54 : 491-498.[PubMed] [CrossRef] ... Nucleic-acid-based characterization of community structure and function, p 65-88. In Jansson JK,, Liu W-T (ed), Environmental ... Minimum evolution tree of com sequences (comQ, comX, and partial comP sequences, 1,402 bp) depicts four sequence clusters that ... Minimum evolution tree of com sequences (comQ, comX, and partial comP sequences, 1,402 bp) depicts four sequence clusters that ...
  http://www.asmscience.org/content/book/10.1128/9781555819323.chap3
*  "Functional characterization of a human histone gene cluster duplicatio" by Corey D. Braastad, Hayk Hovhannisyan et al.
Molecular Sequence Data; Multigene Family; RNA, Messenger; Sequence Homology, Nucleic Acid ... Amino Acid Sequence; Base Sequence; Cell Line, Tumor; Chromosomes, Human, Pair 1; Gene Duplication; Genes, Duplicate; Genome, ...
  https://escholarship.umassmed.edu/gsbs_sp/124/
*  "Splicing of a critical exon of human Survival Motor Neuron is regulate" by Nirmal K. Singh, Natalia N. Singh et al.
Considering that oligonucleotides annealing to intronic sequences do not interfere with exon-junction complex formation or mRNA ... Sequence Deletion; Sequence Homology, Nucleic Acid; *Silencer Elements, Transcriptional ... Considering that oligonucleotides annealing to intronic sequences do not interfere with exon-junction complex formation or mRNA ... Alternative Splicing; Animals; Base Sequence; Cell Line; Cyclic AMP Response Element-Binding Protein; DNA; Exons; Humans; ...
  https://escholarship.umassmed.edu/oapubs/1411/
*  Wikiomics:Repeat finding - OpenWetWare
"identifies protein or nucleic acid sequence homology to proteins encoded by diverse families of transposable elements using PSI ... repmask your_sequence_in_fasta_format You will get a file: your_sequence_in_fasta_format.masked --- name tells all ... build_lmer_table -sequence input_genome_sequence.fas -freq output_lmer.frequency output_lmer.frequency file can be still quite ... RepeatScout -sequence input_genome_sequence.fas -output output_repeats.fas -freq output_lmer.frequency Resources: ** RAM usage ...
  https://openwetware.org/wiki/?title=Wikiomics:Repeat_finding&direction=prev&oldid=476618