*  16S rRNA Sequencing Using the Oxford Nanopore Minion - microBEnet: the microbiology of the Built Environment network
Ribosomal RNA (rRNA), the details. *rRNA in Evolutionary Studies and Environmental Sampling ... The appeal of using MinION for 16S rRNA sequencing is the portability, the potential to get near full-length 16S rRNA reads, ... 16S rRNA Sequencing Using the Oxford Nanopore Minion. By Kyle Bibby Posted in Bioinformatics Journal club Methods and Tools ... 4 thoughts on "16S rRNA Sequencing Using the Oxford Nanopore Minion" * Mick Watson (@BioMickWatson) says: ...
  https://www.microbe.net/2017/01/30/16s-rrna-sequencing-using-the-oxford-nanopore-minion/
*  Integrating host gene expression and the microbiome to explore disease pathogenesis | Genome Biology | Full Text
They used microarrays and 16S ribosomal RNA gene sequencing to interrogate 19,908 host transcripts and 6,999 observed ... Morgan and colleagues used 16S amplicon sequencing and microarrays to infer host-microbe interactions [1]. In the future, ... and transcriptomes will be captured with deeper RNA-Seq. These new technologies will generate data at a greater resolution than ... operational taxonomic units (OTUs; a proxy for bacterial species). Ribosomal sequences with ,97% sequence identity were grouped ...
  https://genomebiology.biomedcentral.com/articles/10.1186/s13059-015-0625-1
*  16S ribosomal RNA - Wikipedia
16S ribosomal RNA (or 16S rRNA) is the component of the 30S small subunit of a prokaryotic ribosome that binds to the Shine- ... Bacterial Sequencing The Ribosomal Database Project Ribosomes and Ribosomal RNA: (rRNA) SILVA rRNA database Greengenes: 16S ... Chakravorty S, Helb D, Burday M, Connell N, Alland D (May 2007). "A detailed analysis of 16S ribosomal RNA gene segments for ... Coenye T, Vandamme P (November 2003). "Intragenomic heterogeneity between multiple 16S ribosomal RNA operons in sequenced ...
  https://en.wikipedia.org/wiki/16S_ribosomal_RNA
*  RCSB PDB - 1PBR: STRUCTURE OF 16S RIBOSOMAL RNA, NMR, MINIMIZED AVERAGE STRUCTURE Literature Report Page
Structure of the A site of Escherichia coli 16S ribosomal RNA complexed with an aminoglycoside antibiotic. ... STRUCTURE OF 16S RIBOSOMAL RNA, NMR, MINIMIZED AVERAGE STRUCTURE. *DOI: 10.2210/pdb1pbr/pdb ...
  http://www.rcsb.org/pdb/explore/litView.do?structureId=1PBR
*  Structure of the A Site of Escherichia coli 16S Ribosomal RNA Complexed with an Aminoglycoside Antibiotic | Science
Structure of the A Site of Escherichia coli 16S Ribosomal RNA Complexed with an Aminoglycoside Antibiotic ... Aminoglycoside antibiotics that bind to 30S ribosomal A-site RNA cause misreading of the genetic code and inhibit translocation ... Structure of the A Site of Escherichia coli 16S Ribosomal RNA Complexed with an Aminoglycoside Antibiotic ... Structure of the A Site of Escherichia coli 16S Ribosomal RNA Complexed with an Aminoglycoside Antibiotic ...
  http://science.sciencemag.org/content/274/5291/1367
*  NASA Technical Reports Server (NTRS) - Sequence of the 16S ribosomal RNA from Halobacterium volcanii, an archaebacterium
The sequence of the 16S ribosomal RNA (rRNA) from the archaebacterium Halobacterium volcanii has been determined by DNA ... Sequence of the 16S ribosomal RNA from Halobacterium volcanii, an archaebacterium. Author and Affiliation:. Gupta, R.. ( ... The sequence of the 16S ribosomal RNA (rRNA) from the archaebacterium Halobacterium volcanii has been determined by DNA ... Although it is closer in sequence to the eubacterial 16S rRNA than to the eukaryotic 16S-like rRNA, the H. volcanii sequence ...
  https://ntrs.nasa.gov/search.jsp?R=19830059696&hterms=Nucleotide+Sequence&qs=Ntx%3Dmode%2Bmatchall%26Ntk%3DAll%26N%3D0%26No%3D30%26Ntt%3DNucleotide%2BSequence
*  ShareMe - free 16s Ribosomal Rna download
16s Ribosomal Rna Related Searches:. Define Messenger Rna , Dharmacon Rna Technologies , Dna Rna Transcription , Function Of ... 16s Ribosomal Rna. From Short Description. 1. Kr0yer - Utilities/Other Utilities ... 16s ribosomal DNA analysis software. It ... Messenger Rna , Messenger Rna , Micro Rna Structure Prediction , Rna Aptamer , Rna In Situ Hybridization , Rna Interference ... 16s Ribosomal Rna. From Long Description. 1. ncRNA Mapper - Multimedia & Design/Graphic & Design ... ncRNA Mapper is a computer ...
  http://shareme.com/programs/16s/ribosomal-rna
*  Conjunctival chlamydial 16S ribosomal RNA expression in trachoma: is chlamydial metabolic activity required for disease to...
Burton, MJ; Holland, MJ; Jeffries, D; Mabey, DC; Bailey, RL; (2006) Conjunctival chlamydial 16S ribosomal RNA expression in ... We measured chlamydial 16S ribosomal RNA (rRNA) expression, a marker of chlamydial metabolic activity, in comparison with the ... Conjunctival chlamydial 16S ribosomal RNA expression in trachoma: is chlamydial metabolic activity required for disease to ... The expression of 16S rRNA was strongly associated with the presence of clinical signs of active trachoma. CONCLUSIONS: The use ...
  http://researchonline.lshtm.ac.uk/12168/
*  US Buy Air Max 2016 Jd Women nike air max 16s ribosomal rna nike air max 2016 kpu nike air max 16 white serving For Sale, Free...
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*  Dysbiotic gut microbiota causes transmissible Crohn's disease-like ileitis independent of failure in antimicrobial defence | Gut
16S ribosomal RNA gene amplicons of the V3/V4 region (407 bp) in faeces were sequenced on a MiSeq platform. (D) Ileitis scores ... To investigate the relationship between ileitis severity and the gut microbiota in SPF mice, we performed 16S ribosomal RNA ... Microbial communities were analysed by high-throughput 16S ribosomal RNA gene sequencing. Metaproteomes were measured using LC- ... 29 Using 16S ribosomal RNA sequencing, we characterised faecal bacterial diversity and composition at different ages in TNF ...
  https://gut.bmj.com/content/early/2015/04/30/gutjnl-2015-309333.full
*  SSU rRNA - Wikipedia
"Escherichia coli 16S ribosomal RNA". "Halobacterium salinarum 18S ribosomal RNA". "Homo sapiens 18S ribosomal RNA (nuclear)". ... "Arabidopsis thaliana 16S ribosomal RNA (chloroplast)". Woese, Carl R.; Kandler, O; Wheelis, M (1990). "Towards a natural system ... Small subunit ribosomal ribonucleic acid (SSU rRNA) is the smallest of the two major RNA components of the ribosome. Associated ... LSU rRNA: the large subunit ribosomal ribonucleic acid. " ... with a number of ribosomal proteins, the SSU rRNA forms the ...
  https://en.wikipedia.org/wiki/SSU_rRNA
*  Clostridium cadaveris - Wikipedia
Woo, P.C.; Lau,Chan,Fung,Tang,Yuen (2005). "Clostridium bacteramia characterized by 16S ribosomal RNA gene sequencing". Journal ... Currently the standard to identify clostrida species such as C. cadaveris is via molecular techniques utilizing ribosomal RNA ...
  https://en.wikipedia.org/wiki/Clostridium_cadaveris
*  Rifamycin - Wikipedia
Based on 16S ribosomal RNA sequences, Bala et al. renamed the species in 2004 Amycolatopsis rifamycinica. Rifamycins were first ... This is due to the high affinity of rifamycins for the prokaryotic RNA polymerase. The selectivity of the rifamycins depends on ... RifA through rifE encode a type I polyketide synthase module, with the loading module being a non-ribosomal peptide synthetase ... The rifamycins have a unique mechanism of action, selectively inhibiting bacterial DNA-dependent RNA polymerase, and show no ...
  https://en.wikipedia.org/wiki/Rifamycin
*  Brocadia fulgida - Wikipedia
The species' 16S ribosomal RNA sequence has been determined. Q. Ashton Acton (2013). Issues in Chemical, Biological, and ...
  https://en.wikipedia.org/wiki/Brocadia_fulgida
*  Globicatella sulfidifaciens - Wikipedia
Lau, S K P (1 March 2006). "Globicatella bacteraemia identified by 16S ribosomal RNA gene sequencing". Journal of Clinical ...
  https://en.wikipedia.org/wiki/Globicatella_sulfidifaciens
*  Micromonospora inyonensis - Wikipedia
Doi, Yohei; Arakawa, Yoshichika (2007). "16S ribosomal RNA methylation: emerging resistance mechanism against aminoglycosides ...
  https://en.wikipedia.org/wiki/Micromonospora_inyonensis
*  Metagenomics - Wikipedia
Lane, DJ; Pace B; Olsen GJ; Stahl DA; Sogin ML; Pace NR (1985). "Rapid determination of 16S ribosomal RNA sequences for ... These early studies focused on 16S ribosomal RNA sequences which are relatively short, often conserved within a species, and ... As viruses lack a shared universal phylogenetic marker (as 16S RNA for bacteria and archaea, and 18S RNA for eukarya), the only ... These surveys of ribosomal RNA (rRNA) genes taken directly from the environment revealed that cultivation based methods find ...
  https://en.wikipedia.org/wiki/Metagenomics
*  Ancient DNA - Wikipedia
Fish SA; Shepherd TJ; McGenity TJ; Grant WD (May 2002). "Recovery of 16S ribosomal RNA gene fragments from ancient halite". ... Fish SA; Shepherd TJ; McGenity TJ; Grant WD (2002). "Recovery of 16S ribosomal RNA gene fragments from ancient halite". Nature ...
  https://en.wikipedia.org/wiki/Ancient_DNA
*  Burkholderia singaporensis - Wikipedia
AY197330 Burkholderia singaporensis strain Gs 16S ribosomal RNA gene, partial sequence. Direct Submission NCBI GenBank " ...
  https://en.wikipedia.org/wiki/Burkholderia_singaporensis
*  List of Nepenthes endophyte species - Wikipedia
Bacillus cibi strain AIMST Ngme2 16S ribosomal RNA gene, partial sequence. NCBI. Bacillus cibi strain AIMST Nmae9 16S ribosomal ... Bacillus cereus strain AIMST Nalbe1 16S ribosomal RNA gene, partial sequence. NCBI. Bacillus cereus strain AIMST Nalbe7 16S ... Bacillus cereus strain AIMST Nalbe8 16S ribosomal RNA gene, partial sequence. NCBI. Bacillus cereus strain AIMST Nalme2 16S ... Bacillus cereus strain AIMST Nalme13 16S ribosomal RNA gene, partial sequence. NCBI. Bacillus cereus strain AIMST Ngme4 16S ...
  https://en.wikipedia.org/wiki/List_of_Nepenthes_endophyte_species
*  RCSB PDB - 1N33: Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna...
Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop ... 16S RIBOSOMAL RNA. A. 1522. Thermus thermophilus. Entity ID: 2. Molecule. Chains. Length. Organism. ... Recognition of Cognate Transfer RNA by the 30S Ribosomal Subunit. Ogle, J.M.,Brodersen, D.E.,Clemons Jr., W.M.,Tarry, M.J., ... Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop ...
  https://www.rcsb.org/structure/1N33
*  Insects | Free Full-Text | Reduced Diversity in the Bacteriome of the Phytophagous Mite Brevipalpus yothersi (Acari:...
... yothersi and three additional Tetranychoidea species using sequences from V4-fragment of 16S DNA. The bacteriomes were ... Keywords: bacterial diversity; Brevipalpus yothersi; false spider mite; Cardinium; habitat filtering; 16S ribosomal RNA; ... 16S ribosomal RNA; Tetranychoidea; Raoiella indica; Tetranychus evansi; Oligonychus ... yothersi and three additional Tetranychoidea species using sequences from V4-fragment of 16S DNA. The bacteriomes were ...
  http://www.mdpi.com/2075-4450/7/4/80
*  Brevinema andersonii - Wikipedia
"Brevinema andersonii strain ATCC 43811 16S ribosomal RNA gene, partial - Nucleotide - NCBI". www.ncbi.nlm.nih.gov. Retrieved ... The 16S rRNA genome is extracted was a partial genome with 1490 bp, the 16S rRNA partial genome reads as: DEFOSSE, D. L.; ... There is also a distinguishing 16S rRNA sequence that corresponds to position 724 to 750 in E. coli (5'- ...
  https://en.wikipedia.org/wiki/Brevinema_andersonii
*  Structure Cluster - 4AQY: Structure of ribosome-apramycin complexes 3D Similarity Report Page
Description: 16S RIBOSOMAL RNA rna , Length: 1522 This entity is NOT a polypeptide entity and therefore cannot be considered ... Description: 30S RIBOSOMAL PROTEIN S14 protein , Length: 60 No structure alignment results are available for 4AQY.N explicitly. ... Description: 30S RIBOSOMAL PROTEIN S15 protein , Length: 88 No structure alignment results are available for 4AQY.O explicitly. ... Description: 30S RIBOSOMAL PROTEIN S16 protein , Length: 88 No structure alignment results are available for 4AQY.P explicitly. ...
  http://www.rcsb.org/pdb/explore/structureCluster.do?structureId=4AQY&bionumber=1
*  RCSB PDB - 1F7Y: THE CRYSTAL STRUCTURE OF TWO UUCG LOOPS HIGHLIGHTS THE ROLE PLAYED BY 2'-HYDROXYL GROUPS IN ITS...
16S RIBOSOMAL RNA FRAGMENT B. 57 synthetic Small Molecules Ligands 3 Unique. ... 30S RIBOSOMAL PROTEIN S15 A 89 Thermus thermophilus Mutation: I11M, M57M, M58M, A79M Gene Name(s): rpsO TTHA1138 ...
  http://www.rcsb.org/pdb/explore/explore.do?structureId=1F7Y