Microbial Contaminants of Cord Blood Units Identified by 16S rRNA Sequencing and by API Test System, and Antibiotic Sensitivity...
However, 14 OTUs had 16S rRNA sequence similarities between 95 and 99% in support of genus level identification and one OTU ... The detection rate for culture positive units was 7.5%, corresponding to 422 samples.16S rRNA sequence analysis and ... Sixty-nine OTUs, corresponding to 447 isolates, showed 16S rRNA sequence similarities above 99.0% with known cultured bacteria ... the lowest ratio of unidentified results and the highest agreement to the results of 16S rRNA assignments. Isolates affiliated ...https://www.semanticscholar.org/paper/Microbial-Contaminants-of-Cord-Blood-Units-Identif-Franca-Sim%C3%B5es/5b137fa5a000a992ac691907d8b8e9bb3188152c
16S rRNA Sequencing Using the Oxford Nanopore Minion - microBEnet: the microbiology of the Built Environment network
Ribosomal RNA (rRNA), the details. *rRNA in Evolutionary Studies and Environmental Sampling ... The appeal of using MinION for 16S rRNA sequencing is the portability, the potential to get near full-length 16S rRNA reads, ... 16S rRNA Sequencing Using the Oxford Nanopore Minion. By Kyle Bibby Posted in Bioinformatics Journal club Methods and Tools ... 4 thoughts on "16S rRNA Sequencing Using the Oxford Nanopore Minion" * Mick Watson (@BioMickWatson) says: ...https://www.microbe.net/2017/01/30/16s-rrna-sequencing-using-the-oxford-nanopore-minion/
Integrating host gene expression and the microbiome to explore disease pathogenesis | Genome Biology | Full Text
They used microarrays and 16S ribosomal RNA gene sequencing to interrogate 19,908 host transcripts and 6,999 observed ... Morgan and colleagues used 16S amplicon sequencing and microarrays to infer host-microbe interactions . In the future, ... and transcriptomes will be captured with deeper RNA-Seq. These new technologies will generate data at a greater resolution than ... operational taxonomic units (OTUs; a proxy for bacterial species). Ribosomal sequences with ,97% sequence identity were grouped ...https://genomebiology.biomedcentral.com/articles/10.1186/s13059-015-0625-1
RCSB PDB - 1PBR: STRUCTURE OF 16S RIBOSOMAL RNA, NMR, MINIMIZED AVERAGE STRUCTURE Literature Report Page
Structure of the A site of Escherichia coli 16S ribosomal RNA complexed with an aminoglycoside antibiotic. ... STRUCTURE OF 16S RIBOSOMAL RNA, NMR, MINIMIZED AVERAGE STRUCTURE. *DOI: 10.2210/pdb1pbr/pdb ...http://www.rcsb.org/pdb/explore/litView.do?structureId=1PBR
16S ribosomal RNA - Wikipedia
16S ribosomal RNA (or 16S rRNA) is the component of the 30S small subunit of a prokaryotic ribosome that binds to the Shine- ... Bacterial Sequencing The Ribosomal Database Project Ribosomes and Ribosomal RNA: (rRNA) SILVA rRNA database Greengenes: 16S ... Chakravorty S, Helb D, Burday M, Connell N, Alland D (May 2007). "A detailed analysis of 16S ribosomal RNA gene segments for ... Coenye T, Vandamme P (November 2003). "Intragenomic heterogeneity between multiple 16S ribosomal RNA operons in sequenced ...https://en.wikipedia.org/wiki/16S_ribosomal_RNA
Structure of the A Site of Escherichia coli 16S Ribosomal RNA Complexed with an Aminoglycoside Antibiotic | Science
Structure of the A Site of Escherichia coli 16S Ribosomal RNA Complexed with an Aminoglycoside Antibiotic ... Aminoglycoside antibiotics that bind to 30S ribosomal A-site RNA cause misreading of the genetic code and inhibit translocation ... Structure of the A Site of Escherichia coli 16S Ribosomal RNA Complexed with an Aminoglycoside Antibiotic ... Structure of the A Site of Escherichia coli 16S Ribosomal RNA Complexed with an Aminoglycoside Antibiotic ...http://science.sciencemag.org/content/274/5291/1367
NASA Technical Reports Server (NTRS) - Sequence of the 16S ribosomal RNA from Halobacterium volcanii, an archaebacterium
The sequence of the 16S ribosomal RNA (rRNA) from the archaebacterium Halobacterium volcanii has been determined by DNA ... Sequence of the 16S ribosomal RNA from Halobacterium volcanii, an archaebacterium. Author and Affiliation:. Gupta, R.. ( ... The sequence of the 16S ribosomal RNA (rRNA) from the archaebacterium Halobacterium volcanii has been determined by DNA ... Although it is closer in sequence to the eubacterial 16S rRNA than to the eukaryotic 16S-like rRNA, the H. volcanii sequence ...https://ntrs.nasa.gov/search.jsp?R=19830059696&hterms=Nucleotide+Sequence&qs=Ntx%3Dmode%2Bmatchall%26Ntk%3DAll%26N%3D0%26No%3D30%26Ntt%3DNucleotide%2BSequence
Graduate Thesis Or Dissertation | An analysis of Sargasso Sea bacterioplankton diversity using 16S ribosomal RNA | ID:...
An analysis of Sargasso Sea bacterioplankton diversity using 16S ribosomal RNA Public Deposited ... The objective of this project was to use ribosomal RNA genes, cloned from natural populations of Sargasso Sea bacterioplankton ... The method described here for analyzing natural bacterial communities circumvents this problem by utilizing ribosomal RNA, ... Two different clone libraries of eubacterial 16S rRNA genes amplified from a natural population of Sargasso Sea picoplankton by ...https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/j098zd11d
ShareMe - free 16s Ribosomal Rna download
16s Ribosomal Rna Related Searches:. Define Messenger Rna , Dharmacon Rna Technologies , Dna Rna Transcription , Function Of ... 16s Ribosomal Rna. From Short Description. 1. Kr0yer - Utilities/Other Utilities ... 16s ribosomal DNA analysis software. It ... Messenger Rna , Messenger Rna , Micro Rna Structure Prediction , Rna Aptamer , Rna In Situ Hybridization , Rna Interference ... 16s Ribosomal Rna. From Long Description. 1. ncRNA Mapper - Multimedia & Design/Graphic & Design ... ncRNA Mapper is a computer ...http://shareme.com/programs/16s/ribosomal-rna
Conjunctival chlamydial 16S ribosomal RNA expression in trachoma: is chlamydial metabolic activity required for disease to...
Burton, MJ; Holland, MJ; Jeffries, D; Mabey, DC; Bailey, RL; (2006) Conjunctival chlamydial 16S ribosomal RNA expression in ... We measured chlamydial 16S ribosomal RNA (rRNA) expression, a marker of chlamydial metabolic activity, in comparison with the ... Conjunctival chlamydial 16S ribosomal RNA expression in trachoma: is chlamydial metabolic activity required for disease to ... The expression of 16S rRNA was strongly associated with the presence of clinical signs of active trachoma. CONCLUSIONS: The use ...http://researchonline.lshtm.ac.uk/12168/
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A comparison of two real-time polymerase chain reaction assays using hybridization probes targeting either 16S ribosomal RNA or...
A comparison of two real-time polymerase chain reaction assays using hybridization probes targeting either 16S ribosomal RNA or ... A comparison of two real-time polymerase chain reaction assays using hybridization probes targeting either 16S ribosomal RNA or ... data has emerged concerning the diagnostic accuracy of the most popular PCR assays that target either the 16S ribosomal RNA ( ... data has emerged concerning the diagnostic accuracy of the most popular PCR assays that target either the 16S ribosomal RNA ( ...https://cris.unibo.it/handle/11585/553047
Frontiers | Differential Analysis of Gut Microbiota Correlated With Oxidative Stress in Sows With High or Low Litter...
DNA Extraction and 16S Ribosomal RNA (rRNA) Amplification. The same 10 sows per group were used to analyze gut microbiota both ... PCR amplification was performed using 16S rRNA universal primers targeting the V3-V4 region of the bacterial 16S rRNA gene. The ... 16S rRNA Sequencing and Microbiota Analysis. Amplicons were extracted from 2% agarose gels, purified using the AxyPrep DNA Gel ... FIGURE 3. 16S rRNA gene analysis revealed a clear separation of the four groups investigated. Heatmap analyses of abundance ...https://www.frontiersin.org/articles/10.3389/fmicb.2018.01665/full
Dysbiotic gut microbiota causes transmissible Crohn's disease-like ileitis independent of failure in antimicrobial defence | Gut
16S ribosomal RNA gene amplicons of the V3/V4 region (407 bp) in faeces were sequenced on a MiSeq platform. (D) Ileitis scores ... To investigate the relationship between ileitis severity and the gut microbiota in SPF mice, we performed 16S ribosomal RNA ... Microbial communities were analysed by high-throughput 16S ribosomal RNA gene sequencing. Metaproteomes were measured using LC- ... 29 Using 16S ribosomal RNA sequencing, we characterised faecal bacterial diversity and composition at different ages in TNF ...https://gut.bmj.com/content/early/2015/04/30/gutjnl-2015-309333.full
RCSB PDB - 1N33: Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna...
Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop ... 16S RIBOSOMAL RNA. A. 1522. Thermus thermophilus. Entity ID: 2. Molecule. Chains. Length. Organism. ... Recognition of Cognate Transfer RNA by the 30S Ribosomal Subunit. Ogle, J.M.,Brodersen, D.E.,Clemons Jr., W.M.,Tarry, M.J., ... Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop ...https://www.rcsb.org/structure/1N33
Insects | Free Full-Text | Reduced Diversity in the Bacteriome of the Phytophagous Mite Brevipalpus yothersi (Acari:...
... yothersi and three additional Tetranychoidea species using sequences from V4-fragment of 16S DNA. The bacteriomes were ... Keywords: bacterial diversity; Brevipalpus yothersi; false spider mite; Cardinium; habitat filtering; 16S ribosomal RNA; ... 16S ribosomal RNA; Tetranychoidea; Raoiella indica; Tetranychus evansi; Oligonychus ... yothersi and three additional Tetranychoidea species using sequences from V4-fragment of 16S DNA. The bacteriomes were ...http://www.mdpi.com/2075-4450/7/4/80
Structure Cluster - 4AQY: Structure of ribosome-apramycin complexes 3D Similarity Report Page
Description: 16S RIBOSOMAL RNA rna , Length: 1522 This entity is NOT a polypeptide entity and therefore cannot be considered ... Description: 30S RIBOSOMAL PROTEIN S14 protein , Length: 60 No structure alignment results are available for 4AQY.N explicitly. ... Description: 30S RIBOSOMAL PROTEIN S15 protein , Length: 88 No structure alignment results are available for 4AQY.O explicitly. ... Description: 30S RIBOSOMAL PROTEIN S16 protein , Length: 88 No structure alignment results are available for 4AQY.P explicitly. ...http://www.rcsb.org/pdb/explore/structureCluster.do?structureId=4AQY&bionumber=1
RCSB PDB - 1F7Y: THE CRYSTAL STRUCTURE OF TWO UUCG LOOPS HIGHLIGHTS THE ROLE PLAYED BY 2'-HYDROXYL GROUPS IN ITS...
16S RIBOSOMAL RNA FRAGMENT B. 57 synthetic Small Molecules Ligands 3 Unique. ... 30S RIBOSOMAL PROTEIN S15 A 89 Thermus thermophilus Mutation: I11M, M57M, M58M, A79M Gene Name(s): rpsO TTHA1138 ...http://www.rcsb.org/pdb/explore/explore.do?structureId=1F7Y
Structure Cluster - 1HNX: STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH PACTAMYCIN 3D...
... and hygromycin B on the 30S ribosomal subunit. ... Description: 16S RIBOSOMAL RNA rna , Length: 1522 This entity ... Description: FRAGMENT OF MESSENGER RNA rna , Length: 6 This entity is NOT a polypeptide entity and therefore cannot be ... Description: 30S RIBOSOMAL PROTEIN S9 protein , Length: 128 No structure alignment results are available for 1HNX.I explicitly. ... Description: 30S RIBOSOMAL PROTEIN S14 protein , Length: 61 No structure alignment results are available for 1HNX.N explicitly. ...http://www.rcsb.org/pdb/explore/structureCluster.do?structureId=1HNX
Semi-automatic in silico gap closure enabled de novo assembly of two Dehalobacter genomes from metagenomic data. - PubMed -...
RNA, Ribosomal, 16S. *Reproducibility of Results. Substance. *RNA, Ribosomal, 16S. LinkOut - more resources. Full Text Sources ... Microbial composition determined by 16S rRNA pyrotag sequences from the ACT-3 parent culture and two subcultures. ... The incomplete resolution of three gaps in which 5S, 16S, and 23S rRNA genes locate. ... The microbial composition was determined by pyrotag sequencing of the 16S rRNA gene . ...https://www.ncbi.nlm.nih.gov/pubmed/23284863?access_num=23284863&link_type=MED&dopt=Abstract
Structure, function and diversity of the healthy human microbiome. - PubMed - NCBI
RNA, Ribosomal, 16S/genetics. *Young Adult. Substance. *RNA, Ribosomal, 16S. Grant support. *N01HG62088/HG/NHGRI NIH HHS/United ... A) Alpha diversity within subjects by body habitat, as measured using the relative inverse Simpson index of 16S rRNA gene OTUs ... Vertical bars represent microbiome samples by body habitat in the seven locations with both shotgun and 16S data; bars indicate ... The most abundant A) metagenomically-identified species, B) 16S-identified genera, and C) PATRIC "pathogens" (metagenomic). The ...https://www.ncbi.nlm.nih.gov/pubmed/22699609?dopt=Abstract
RCSB PDB - Protein Feature View - 30S ribosomal protein S20 - P21477 (RS20 BACSU)
Binds directly to 16S ribosomal RNA. UniProt Pathway Maps Maps: Reactions: Expand Pathway View. ESCHER BiGG ...http://www.rcsb.org/pdb/protein/P21477
Sequence Similarity - 1EMI: STRUCTURE OF 16S RRNA IN THE REGION AROUND RIBOSOMAL PROTEIN S8. Sequence Similarity...
The location of protein S8 and surrounding elements of 16S rRNA in the 70S ribosome from combined use of directed hydroxyl ... 16S RIBOSOMAL RNA rna, length: 161 (BLAST) Sequence Similarity Cutoff. Rank. Chains in Cluster. Cluster ID / Name. ... RIBOSOMAL PROTEIN S8 protein, length: 136 (BLAST) Sequence Similarity Cutoff. Rank. Chains in Cluster. Cluster ID / Name. ...http://www.rcsb.org/pdb/explore/sequenceCluster.do?structureId=1EMI
Occurrence of Methicillin Resistant and Enterotoxigenic Staphylococcus aureus in Traditional Cheeses in the North West of...
Primer Design for 16S Ribosomal RNA Gene. Several nucleotide sequences corresponding to staphylococcal 16S rDNA gene were ... The designated primers were used for amplification of an approximately 1412 bp of 16S ribosomal RNA gene. PCR was carried out ... 2X Amplicon Master Mix was used in the same quantity described for 16S ribosomal RNA gene. Initial denaturation was 3 min at 94 ... All of the mentioned isolates were positive for coa, nuc, and 16S rDNA primers. 21% of these isolates were mecA positive and ...https://www.hindawi.com/journals/isrn/2014/129580/
Campylobacter coli (Doyle) Veron and Chatelain ATCC ® 33559™
Nucleotide (GenBank) : M59073 Campylobacter coli 16S ribosomal RNA. Nucleotide (GenBank) : AF136494 Campylobacter coli GlyA ( ... Nucleotide (GenBank) : AF372092 Campylobacter coli strain LMG 6440 16S ribosomal RNA gene, partial sequence ...https://www.atcc.org/Products/Quality_Control_Strains/By_Organization__Company/33559.aspx