*  List of MeSH codes (G06) - Wikipedia
... repetitive sequences, nucleic acid MeSH G06.184.603.080.708.330 --- interspersed repetitive sequences MeSH G06.184.603.080. ... repetitive sequences, amino acid MeSH G06.184.603.060.720.030 --- ankyrin repeat MeSH G06.184.603.080 --- base sequence MeSH ... amino acid MeSH G06.184.842.200.820 --- structural homology, protein MeSH G06.184.842.550 --- sequence homology, nucleic acid ... regulatory sequences, nucleic acid MeSH G06.184.603.080.689.330 --- enhancer elements (genetics) MeSH G06.184.603.080.689.330. ...
  https://en.wikipedia.org/wiki/List_of_MeSH_codes_(G06)
*  Diethard Tautz - Wikipedia
Simple sequences are ubiquitous repetitive components of eukaryotic genomes. Nucleic Acids Research, 12, 4127-4138. Tautz, D. ( ... 1989). Hypervariability of simple sequences as a general source for polymorphic DNA markers. Nucleic Acids Research, 17, 6463- ... Tribolium Sequencing Consortium (2008). The genome of the model beetle and pest Tribolium castaneum Nature 452, 949-955. ... His thesis dealt with the first generic description of simple sequences (now often called microsatellites). This work became ...
  https://en.wikipedia.org/wiki/Diethard_Tautz
*  TIGR plant repeat database - Wikipedia
... a collective resource for the identification of repetitive sequences in plants". Nucleic Acids Res. England. 32 (Database issue ... The TIGR plant repeat database is a repository of repetitive sequences in plants. repetitive sequences Ouyang, Shu; Buell C ...
  https://en.wikipedia.org/wiki/TIGR_plant_repeat_database
*  Mycobacterium ulcerans - Wikipedia
"Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes". Nucleic Acids ... methods based on fatty acids, proteins and nucleic acids. Actually, the genotypic typing methods (DNA fingerprinting) that ... Nucleic Acids Res. 23 (21): 4407-4. doi:10.1093/nar/23.21.4407. PMC 307397 . PMID 7501463. Huys, G.; L. Rigouts; K. Chemlal; F ... based on a variable number of tandem repeats and mycobacterial interspersed repetitive units. Next-Generation Sequencing will ...
  https://en.wikipedia.org/wiki/Mycobacterium_ulcerans
*  Repeated sequence (DNA) - Wikipedia
Repeated sequences (also known as repetitive elements, or repeats) are patterns of nucleic acids (DNA or RNA) that occur in ... with over two-thirds of the sequence consisting of repetitive elements in humans. Repetitive elements found in genomes fall ... The disposition of repetitive elements consists either in arrays of tandemly repeated sequences, or in repeats dispersed ... Nucleic Acids Research, 2016 Ussery, David W.; Wassenaar, Trudy; Borini, Stefano (2008-12-22). "Word Frequencies, Repeats, and ...
  https://en.wikipedia.org/wiki/Repeated_sequence_(DNA)
*  Mammalian-wide interspersed repeat - Wikipedia
Nucleic Acids Research. 23 (1): 98-102. doi:10.1093/nar/23.1.98. Lander; et al. (2001). "Initial sequencing and analysis of the ... Jurka, Jerzy; Walichiewicz, Jolanta; Milosavljevic, Aleksandar (October 1992). "Prototypic sequences for human repetitive DNA ... "Identification of a conserved sequence in the non-coding regions of many human genes". Nucleic Acids Research. 17 (2): 699-722 ... The MIR consensus sequence is 260 basepairs long and has an A/T-rich 3' end. Like other Short interspersed nuclear elements ( ...
  https://en.wikipedia.org/wiki/Mammalian-wide_interspersed_repeat
*  Transposable element - Wikipedia
De novo repeat identification is an initial scan of sequence data that seeks to find the repetitive regions of the genome, and ... Dennis J. Strand; John F. McDonald (1985). "Copia is transcriptionally responsive to environmental stress". Nucleic Acids ... A consensus sequence is a sequence that is created based on the repeats that comprise a TE family. A base pair in a consensus ... Sequence self-comparison programs use databases such as AB-BLAST to conduct an initial sequence alignment. As these programs ...
  https://en.wikipedia.org/wiki/Transposable_element
*  RNA-based evolution - Wikipedia
Short tails of repetitive nucleic acids are often added to the ends of RNA molecules in order to prevent degradation, ... By regulating the transcription of DNA sequences, the stability of RNA, and the capability of messenger RNA to be translated, ... Marguet E, Forterre P (1994). "DNA stability at temperatures typical for hyperthermophiles". Nucleic Acids Res. 22 (9): 1681- ... such as amino acids, sugars, and hydroxyl acids) that were likely present 4 billion years ago. Molecules of RNA have also been ...
  https://en.wikipedia.org/wiki/RNA-based_evolution
*  Q-FISH - Wikipedia
... synthetic DNA mimics called peptide nucleic acid (PNA) oligonucleotides to quantify target sequences in chromosomal DNA using ... Q-FISH is most commonly used to study telomere length, which in vertebrates are repetitive hexameric sequences (TTAGGG) located ... By using conditions that only allow labeled (CCCTAA)3 PNA to hybridize to (TTAGGG)n target sequences, Q-FISH is able to ... The hypotonic solution is then removed by centrifugation and resuspended in a methanol/glacial acetic acid fixative. Place a ...
  https://en.wikipedia.org/wiki/Q-FISH
*  Signal recognition particle RNA - Wikipedia
Larsen N, Zwieb C (Jan 1991). "SRP-RNA sequence alignment and secondary structure". Nucleic Acids Research. 19 (2): 209-15. doi ... "Human 7SL RNA consists of a 140 nucleotide middle-repetitive sequence inserted in an alu sequence". Cell. 29 (1): 195-202. doi: ... "Model for signal sequence recognition from amino-acid sequence of 54K subunit of signal recognition particle". Nature. 340 ( ... Regalia M, Rosenblad MA, Samuelsson T (Aug 2002). "Prediction of signal recognition particle RNA genes". Nucleic Acids Research ...
  https://en.wikipedia.org/wiki/Signal_recognition_particle_RNA
*  Glycoinformatics - Wikipedia
... other two being proteins and nucleic acids. Unlike proteins and nucleic acids which are linear, carbohydrates are often ... Owing to the lack of a genetic blue print, carbohydrates do not have a "fixed" sequence. Instead, the sequence is largely ... Despite their repetitive nature, carbohydrates are often considered as the "information poor" molecules. Consequently, ... The sequence of branching information in a carbohydrate molecule is represented in the figure. Flitsch SL and Ulijn RV (2003). ...
  https://en.wikipedia.org/wiki/Glycoinformatics
*  MAEB RNA motif - Wikipedia
The second hypothesis considered is that MAEB is a repetitive DNA sequence. Although the repetitive nature of MAEB stem-loops ... Nucleic Acids Res. 35 (14): 4809-19. doi:10.1093/nar/gkm487. PMC 1950547 . PMID 17621584. ... Rather the repetitive nature of MAEB stem-loops probably has a functional role for the cell. The third hypothesis advanced is ... usually with 2-6 consecutive instances of MAEB stem-loops separated by a short and conserved linker sequence. As many as 12 ...
  https://en.wikipedia.org/wiki/MAEB_RNA_motif
*  HNRNPA1 - Wikipedia
... enzymatic methylation of nucleic acid binding proteins". Amino Acids. 15 (4): 291-306. doi:10.1007/BF01320895. PMID 9891755. ... Epplen C, Epplen JT (1994). "Expression of (cac)n/(gtg)n simple repetitive sequences in mRNA of human lymphocytes". Hum. Genet ... The hnRNP proteins have distinct nucleic acid binding properties. The protein encoded by this gene has two repeats of quasi-RRM ... Nucleic Acids Res. 16 (9): 3751-70. doi:10.1093/nar/16.9.3751. PMC 336554 . PMID 2836799. Riva S, Morandi C, Tsoulfas P, ...
  https://en.wikipedia.org/wiki/HNRNPA1
*  Index of biochemistry articles - Wikipedia
Nucleic acid - nucleic acid regulatory sequence - nucleic acid repetitive sequence - nucleic acid sequence homology - nucleon ... amino acid - amino acid receptor - amino acid sequence - amino acid sequence homology - aminobutyric acid - ammonia - AMPA ... sequence (biology) - sequence homology - sequence motif - sequencing - serine - serotonin - serotonin receptor - serpin - ... It deals with the structure and function of cellular components such as proteins, carbohydrates, lipids, nucleic acids and ...
  https://en.wikipedia.org/wiki/Index_of_biochemistry_articles
*  Interspersed repeat - Wikipedia
The effect of homogenizing DNA sequences is the same. Repetitive sequences play the role of uncoupling the gene conversion ... Nucleic Acids Res. 12 (3): 1641-55. doi:10.1093/nar/12.3.1641. PMC 318605 . PMID 6322113. Hess JF, Fox M, Schmid C, Shen CK ( ... Interspersed Repetitive Sequences at the US National Library of Medicine Medical Subject Headings (MeSH). ... Some types of interspersed repetitive DNA elements allow new genes to evolve by uncoupling similar DNA sequences from gene ...
  https://en.wikipedia.org/wiki/Interspersed_repeat
*  Long interspersed nuclear element - Wikipedia
"A family of long reiterated DNA sequences, one copy of which is next to the human beta globin gene". Nucleic Acids Research. 8 ... Kapitonov, Vladimir V.; Pavlicek, Adam; Jurka, Jerzy (2006-01-01). Anthology of Human Repetitive DNA. Wiley-VCH Verlag GmbH & ... Nucleic Acids Research. 42 (1): 396-416. doi:10.1093/nar/gkt898. PMC 3874205 . PMID 24101588. Kazazian, H. H.; Wong, C.; ... Nucleic Acids Research. 42 (12): 7694-7707. doi:10.1093/nar/gku503. PMC 4081101 . PMID 24914052. ...
  https://en.wikipedia.org/wiki/Long_interspersed_nuclear_element
*  Retrotransposon - Wikipedia
In plant genomes, LTR retrotransposons are the major repetitive sequence class, e.g. able to constitute more than 75% of the ... These functions include reverse transcriptase and endonuclease activities, in addition to a nucleic acid-binding property ... then converted back into identical DNA sequences using reverse transcription, and these sequences are then inserted into the ... These DNA sequences use a "copy-and-paste" mechanism, whereby they are first transcribed into RNA, ...
  https://en.wikipedia.org/wiki/Retrotransposon
*  Dot plot (bioinformatics) - Wikipedia
One way to visualize the similarity between two protein or nucleic acid sequences is to use a similarity matrix, known as a dot ... Regions of local similarity or repetitive sequences give rise to further diagonal matches in addition to the central diagonal. ... a Method for Comparing Sequences. Its Use with Amino Acid and Nucleotide Sequences". Eur. J. Biochem. 16: 1-11. doi:10.1111/j. ... Low-complexity regions are regions in the sequence with only a few amino acids, which in turn, causes redundancy within that ...
  https://en.wikipedia.org/wiki/Dot_plot_(bioinformatics)
*  Northern blot - Wikipedia
Probes for northern blotting are composed of nucleic acids with a complementary sequence to all or part of the RNA of interest ... Gortner, G.; Pfenninger, M.; Kahl, G.; Weising, K. (1996). "Northern blot analysis of simple repetitive sequence transcription ... In this procedure, the substrate nucleic acid (that is affixed to the membrane) is a collection of isolated DNA fragments, and ... Nucleic Acids Research. 21 (14): 3337-3338. doi:10.1093/nar/21.14.3337. PMC 309787 . PMID 8341618. Streit, S.; Michalski, C. W ...
  https://en.wikipedia.org/wiki/Northern_blot
*  Piwi - Wikipedia
The piwi domain is a protein domain found in piwi proteins and a large number of related nucleic acid-binding proteins, ... In addition, Piwi associates with Heterochromatin protein 1, an epigenetic modifier, and piRNA-complementary sequences. These ... genomic organization that may originate from repetitive regions of the genome such as retrotransposons or regions normally ... Argonautes, the most well-studied family of nucleic-acid binding proteins, are RNase H-like enzymes that carry out the ...
  https://en.wikipedia.org/wiki/Piwi
*  J├╝rgen Brosius - Wikipedia
DNA sequence of the region from 89.2 to 92.8 minutes. Nucleic Acids Res. 1993 Nov 25;21(23):5408-17.y Brosius J. Plasmid ... He observed analogous trends in the field of repetitive or transposed genomic elements (TEs) including retroposed elements. ... There, he sequenced the first large ribosomal RNAs via their genes utilizing the Maxam-Gilbert sequencing method. It took ~2.5 ... Protein sequence analysis: automated microsequencing. Science. 1983 Feb 11;219(4585):650-9. Brosius J, Dull TJ, Sleeter DD, ...
  https://en.wikipedia.org/wiki/J%C3%BCrgen_Brosius
*  Fosmid - Wikipedia
1992). "Stable propagation of cosmid-sized human DNA inserts in an F-factor based vector". Nucleic Acids Res. 20 (5): 1083-1085 ... Highly repetitive in nature, human DNA is well known for its extreme instability in multicopy vector systems. It has been found ... Fosmid clones were used to help assess the accuracy of the Public Human Genome Sequence. The fertility plasmid or F-plasmid was ... The first step in sequencing entire genomes is cloning the genome into manageable units of some 50-200 kilobases in length. It ...
  https://en.wikipedia.org/wiki/Fosmid
*  Short interspersed nuclear elements (SINEs) - Wikipedia
Nucleic Acids Research 41, D83-D89. Deininger P. and Batzer M. (2002). Mammalian Retroelements. Genome Res 12, 1455-1465. White ... For example, the 5' of the Alu sine is derived from 7SL RNA, a sequence transcribed by RNA Polymerase III which codes for the ... Jurka J. (December 2004). Evolutionary impact of human Alu repetitive elements. Current Opinion in Genetics & Development 14(6 ... This enables the LINE mRNA to be reverse-transcribed into DNA and integrated into the genome based on the sequence-motifs ...
  https://en.wikipedia.org/wiki/Short_interspersed_nuclear_elements_(SINEs)
*  Trinucleotide repeat expansion - Wikipedia
Due to the repetitive nature of the DNA sequence in these regions, 'loop out' structures may form during DNA replication while ... Nucleic Acids Res. 39 (15): 1-11. doi:10.1093/nar/gkr429. PMC 3177194 . PMID 21666257. McIvor EI, Polak U, Napierala M (2010 ... If the loop out structure is formed from the sequence on the daughter strand this will result in an increase in the number of ...
  https://en.wikipedia.org/wiki/Trinucleotide_repeat_expansion
*  Edwin Southern - Wikipedia
These and other studies on repetitive DNA sequences enabled him to suggest how non-coding chromosomal DNA may have evolved. ... Nucleic Acids Research. 20 (7): 1679-1684. doi:10.1093/nar/20.7.1679. PMC 312256 . PMID 1579459. Milner, N.; Mir, K. U.; ... had an unexpectedly simple repetitive structure based on a sequence of six nucleotides. In mouse satellite DNA he showed both ... Southern has done pioneering work on the organization of DNA sequences in chromosomes. Apart from studies on crab poly-AT ...
  https://en.wikipedia.org/wiki/Edwin_Southern