*  A Bioinformatics Analysis of Bacterial Type-III Secretion System Genes and Proteins - eTheses Repository
A Bioinformatics Analysis of Bacterial Type-III Secretion System Genes and Proteins. ... T3SSs consist of multiple proteins which assemble to form an apparatus capable of exporting proteins through both membranes of ... Proteins conserved amongst T3SSS can be used for analysis of these systems using computational homology searching. By using ... both in terms of the proteins they contain, and also the bacteria which contain them. In silico analysis of several of the ...
  http://etheses.bham.ac.uk/1300/
*  bpa - Bacterial proteasome activator - Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) - bpa gene & protein
... which suggests Bpa could play a role in the removal of non-native or damaged proteins by influencing the conformation of the ... Protein. Similar proteins. Organisms. Length. Cluster ID. Cluster name. Size. P9WKX2. P65092. P9WKX3. A0A062WBT6. A0A0K2I2E7. ... Protein. Similar proteins. Organisms. Length. Cluster ID. Cluster name. Size. P9WKX2. P65092. P9WKX3. A0A062WBT6. A0A0K2I2E7. ... Protein. Similar proteins. Organisms. Length. Cluster ID. Cluster name. Size. P9WKX2. P65092. P9WKX3. A0A062WBT6. A0A0K2I2E7. ...
  http://www.uniprot.org/uniprot/P9WKX2
*  Structural model of ATP-binding proteins associated with cystic fibrosis, multidrug resistance and bacterial transport. | UK CF...
... and eukaryotic proteins including the P-glycoprotein associated with multidrug resistance in tumours (MDR), the STE6 gene ... This superfamily includes the well characterized periplasmic binding protein-dependent uptake systems of prokaryotes, bacterial ... and the product of the cystic fibrosis gene (CFTR). Here we present a tertiary structure model of the ATP-binding cassettes ... superfamily of transport systems now includes over thirty proteins that share extensive sequence similarity and domain ...
  http://cfgenetherapy.org.uk/publications/publication/296
*  Protein secretion systems in bacterial-host associations, and their description in the Gene Ontology
... ... Here we survey bacterial secretion systems known to modulate interactions with host organisms and describe Gene Ontology terms ... Protein secretion plays a central role in modulating the interactions of bacteria with their environments. This is particularly ... A number of secreted proteins are destined to enter the host cell (effectors and toxins), and thus several secretion systems ...
  https://vtechworks.lib.vt.edu/handle/10919/18926
*  Phylogenomics of Prokaryotic Ribosomal Proteins
Distribution of ribosomal protein genes across bacterial genome partitions. In 68 of the 995 analyzed bacterial genomes, r- ... Of the 56 bacterial r-proteins, 44 were found to be strictly ubiquitous in 995 bacterial genomes. Six proteins, L19p, L31p, ... lineage-specific gene loss, and horizontal gene transfer in evolution of bacterial ribosomal proteins. Genome Biol 2: RESEARCH ... Phyletic patterns of bacterial and archaeal r-protein genes were mapped to phylogenetic trees reconstructed from concatenated ...
  http://pubmedcentralcanada.ca/pmcc/articles/PMC3353972/
*  Scientists visualise cellular handmaiden that restores shape t...( A gigantic protein complex responsible ...)
... proteins,biological,biology news articles,biology news today,latest biology news,current biology news,biology newsletters ... A gigantic protein complex responsible for looking after bent out of s...The structure of the chaperonin complex of the ... Stuck on you: Scientists lay bare secrets of bacterial attachment proteins. 8. Scientists discover proteins involved in spread ... propertiesNew discovery in malariaGene's role in malaria drug resistance proved ...
  http://news.bio-medicine.org/biology-news-2/Scientists-visualise-cellular-handmaiden-that-restores-shape-to-proteins-516-1/
*  Stacking Interactions: The Key Mechanism for Binding of Proteins to Single-Stranded Regions of Native and Damaged Nucleic Acids...
... the regulation of gene expression by a repressor molecule, and the binding of RNA polymerase to a promoter are some examples of ... ALBERTS, B.M., FREY, L., and DELIUS, H. (1972). Isolation and characterization of gene proteins of filamentous bacterial ... JENSEN, D.E., KELLY, R.C.,and VON HIPPEL, P.H. (1976). DNA "melting" proteins. II. Effects of bacteriophage T4 gene 32-protein ... ANDERSON, R.A. and COLEMAN, J.E. (1975). Physicochemical properties of DNA binding proteins: gene 32 protein and E. coli ...
  https://link.springer.com/chapter/10.1007/978-1-4684-7615-6_18
*  Ribosomal protein - Wikipedia
"Systematic chromosomal deletion of bacterial ribosomal protein genes". J. Mol. Biol. 413 (4): 751-61. doi:10.1016/j.jmb.2011.09 ... A ribosomal protein (r-protein or rProtein) is any of the proteins that, in conjunction with rRNA, make up the ribosomal ... coli ribosomal protein genes can be individually deleted from the genome. Similarly, 16 ribosomal proteins (L1, L9, L15, L22, ... "Inactivation of ribosomal protein genes in Bacillus subtilis reveals importance of each ribosomal protein for cell ...
  https://en.wikipedia.org/wiki/Ribosomal_protein
*  Crystallizing the function of the magnetosome membrane mineralization protein Mms6 | Biochemical Society Transactions
2003) Genes and proteins involved in bacterial magnetic particle formation. Trends Microbiol. 11:536-541, doi:10.1016/j.tim. ... 1995) An iron-regulated gene, magA, encoding an iron transport protein of Magnetospirillum sp. Strain AMB-1. J. Biol. Chem. 270 ... Membrane Proteins From A to Z. Crystallizing the function of the magnetosome membrane mineralization protein Mms6. Sarah S. ... 2011) Magnetic bacterial protein Mms6 controls morphology, crystallinity and magnetism of cobalt-doped magnetite nanoparticles ...
  http://www.biochemsoctrans.org/content/44/3/883
*  Mexico Biotechnology Workshop 2016 - ICGEB
Human Genes, Bacterial Anticancer Proteins/Peptides, Product of Nature and Patent Eligibility Issues in the United States. ... My talk will deal with the development of bacterial protein/peptide drugs with broad modes of action so that a single drug will ... However, unmodified protein drugs are products of nature and the recent US Supreme Court decisions make the patents on such ...
  http://www.icgeb.org/mexico-biotechnology-workshop-2016.html
*  Link between sea and land animals found | Page 3 | Sciforums
Genes encoding bacterial proteins involved in structure or assembly of flagella have not been reported in archaeal genomes. If ... FlaA proteins bear no sequence similarity to the FlaB proteins which make up the filament proper. The FlaB proteins have N- and ... They are comprised of FlaA sheath proteins and usually multiple (two to four) FlaB core proteins. The FlaA proteins are made ... The outer-membrane proteins may be anchored to the peptidoglycan, forming tracks. Several genes have been implicated in gliding ...
  http://www.sciforums.com/threads/link-between-sea-and-land-animals-found.53866/page-3
*  Discussion 2 - CELL BIOLOGY(BIO 320 FALL 2009 DISCUSSION 2 KEY 1 What are the four weak(noncovalent interactions that determine...
Cro is a bacterial gene regulatory protein that binds to DNA to turn genes off. It is a symmetrical 'head-to-head' dimer. Each ... Neither reagent alone has any effect. (a) Why does boiling an egg white cause it to harden? (a) Heating egg-white proteins ... Together, but not separately, the two reagents eliminate the bonds that hold the tangled protein chains in place. 3. ... Ice crystals that form in the presence of antifreeze proteins are abnormal in ...
  https://www.coursehero.com/file/5586463/Discussion-2/
*  IdentiCS - Identification of coding sequence and in silico reconstruction of the metabolic network directly from unannotated...
Instead of using predicted genes or CDSs to query public databases, entries from public DNA or protein databases are used as ... The results suggest that a 3.9-fold coverage of the bacterial genome could be sufficiently used for the in silico ... Compared to other gene finding methods such as CRITICA our method is more suitable for exploiting sequences of low genome ... The reversed querying process and the program IdentiCS allow a fast and adequate prediction protein coding sequences and ...
  https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-5-112
*  An unsupervised classification scheme for improving predictions of prokaryotic TIS | BMC Bioinformatics | Full Text
As compared with other methods for improving predictions of gene starts in bacterial genomes, our approach is not based on any ... The algorithm requires an initial gene prediction and the genomic sequence of the organism to perform the reannotation. ... Therefore prior assumptions about the properties of prokaryotic gene starts may cause suboptimal predictions for newly ... Although it is not difficult for state-of-the-art gene finders to identify coding regions in prokaryotic genomes, exact ...
  https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-7-121
*  Two Group A Streptococcus Genes Linked to Flesh-Eating Bacterial Infections
... these genes likely encode proteins in the bacterial membrane. This is a prime location for gene products involved in infection ... Two Group A Streptococcus Genes Linked to Flesh-Eating Bacterial Infections. September 23, 2017 ... "These genes would be good targets for a vaccine or treatment because the bacteria missing these genes did not flourish in the ... The genes, subcutaneous fitness genes A (scfA) and B (scfB), may prove to be promising clinical targets in the fight against ...
  http://www.infectioncontroltoday.com/news/2017/09/wo-group-a-streptococcus-genes-linked-to-flesheating-bacterial-infections.aspx
*  Magnetotactic bacteria - Wikipedia
Matsunaga, Okamura; Okamura, Y (2003). "Genes and proteins involved in bacterial magnetic particle formation". Trends in ... immobilised on magnetotactic bacterial magnetite particles; and the introduction of genes into cells, a technology in which ... the second group consists of heat shock proteins (HSPs) involved in the degradation of badly folded proteins. Other than the ... a structural motif mediating protein-protein interactions". BioEssays. 21 (11): 932-9. doi:10.1002/(SICI)1521-1878(199911)21:11 ...
  https://en.wikipedia.org/wiki/Magnetotactic_bacteria
*  Exam #2 (7-9) Flashcards by Justin King | Brainscape
Bacterial genes that code for the production of a single protein 9 ... Division of genes composed of a sequence of three nucleotides found within the same gene; if the gene codes for a protein, then ... Incorporation of gene only successful 1% of the time. - Once inside the cell, the new genes are incorporated into the bacterial ... The viruses leave the infected bacterial cell and enter a new and uninfected bacterial cell, depositing the bacterial DNA ...
  https://www.brainscape.com/flashcards/exam-2-7-9-990452/packs/1713952
*  Difference between revisions of "CH391L/S13/Mechanosensing" - OpenWetWare
First discovery of bacterial pressure-regulated gene, channel protein OmpH. * Chi E and Bartlett DH. Use of a reporter gene to ... or membrane proteins[9, 10]. Down-regulated genes might include nutrient transporters[11, 12]. In other cases, porin proteins ... all of these gene products encode for channel proteins, a subclass of which are the other main mechanosensing proteins. It has ... Some channels resemble those of the bacterial Msc proteins, but unlike bacterial versions no direct evidence for mechanical ...
  https://openwetware.org/wiki/?title=CH391L/S13/Mechanosensing&diff=695840&oldid=693177
*  Regulation of the level of methylation of a protein involved in bacterial chemotaxis | SpringerLink
It is now known that the extent of methylation of this protein (called MCP... ... In 1975 our laboratory reported that a methylated membrane protein is involved in bacterial chemotaxis (Kort et al., 1975). ... 1977). Identification of a Protein Methyltransferase as the cheR Gene Product in the Bacterial Sensing System. Proceedings of ... Kort, E.N., Goy, M.F., Larsen, S.H. and Adler, J. (1975). Methylation of a Membrane Protein Involved in Bacterial Chemotaxis. ...
  https://link.springer.com/chapter/10.1007/978-1-349-06343-7_13
*  Antievolution.org - Antievolution.org Discussion Board -Topic::Evolution of eukaryotic cilia/flagella
The latter gene product is a bacterial protein that plays an essential role in splitting the two cells during cell division and ... He and his colleagues focused on two bacterial proteins, MreB and Mbl, because of evidence that the genes coding for them have ... First, the genes arose via a horizontal gene transfer from a eukaryote, and second, that the bacterial tubulins are ancestral ... Here we report the presence of two tubulin-like genes [bacterial tubulin a (btuba) and bacterial tubulin b (btubb)] in bacteria ...
  http://www.antievolution.org/cgi-bin/ikonboard/ikonboard.cgi?s=5a1200a7112225b8
*  Ribozyme - Conservapedia
... they are the only types of introns found in the few bacterial protein-coding genes that contain introns. Self-splicing introns ... Similar to proteins, RNAs derive their function from their structure. The primary structure of an RNA refers to its sequence, ... It is the part of the large subunit of a ribosome that catalyzes peptide bond formation between amino acids during protein ... The catalytic site (or sites) of a ribozyme function in a similar manner to the active sites of protein enzymes. They lower the ...
  https://www.conservapedia.com/index.php?title=Ribozyme
*  Difference between revisions of "Ribozyme" - Conservapedia
... they are the only types of introns found in the few bacterial protein-coding genes that contain introns. Self-splicing introns ... they are the only types of introns found in the few bacterial protein-coding genes that contain introns. Self-splicing introns ... they are the only types of introns found in the few bacterial protein-coding genes that contain introns. Self-splicing introns ... Similar to proteins, RNAs derive their function from their structure. The primary structure of an RNA refers to its sequence, ...
  http://www.conservapedia.com/index.php?title=Ribozyme&diff=prev&oldid=1016219
*  Frontiers | Environmental and Gut Bacteroidetes: The Food Connection | Microbiology
... gene duplications and lateral gene transfers, a feature that could have driven their adaptation to distinct ecological niches. ... proteins and carbohydrates. This review presents the current knowledge on the role and mechanisms of polysaccharide degradation ... gene duplications and lateral gene transfers, a feature that could have driven their adaptation to distinct ecological niches. ... Lateral gene transfer can provide gut bacteria with original sets of utensils to degrade otherwise refractory substrates found ...
  https://www.frontiersin.org/articles/10.3389/fmicb.2011.00093/full
*  DNA Mismatch Repair System: Repercussions in Cellular Homeostasis and Relationship with Aging
Enteropathogenic Escherichia coli (EPEC) carry the eae gene, which encodes the bacterial adhesion protein intimin; this protein ... specific genes and proteins are activated. One of such groups is the MutS family of proteins, integrated by MSH2, MSH3, and ... hypermutation in Ig V genes from mice deficient in the MLH1 mismatch repair protein," Journal of Immunology, vol. 162, no. 6, ... Another gene associated with MMR defects that has been extensively studied is the tumor-suppressor gene BRCA1 [61] related to ...
  https://www.hindawi.com/journals/omcl/2012/728430/
*  Bacteria help reveal a secret to evolution - Technology & science - Science - LiveScience | NBC News
Disruptions appeared in bacterial genes responsible for producing a protein complex, called ManXYZ, in the inner membrane. That ... The virus does this using a so-called J protein at the end of its tail; this protein unlocks the door into the bacterial cell, ... An image of a protein, LamB, found on the surface of a bacterial cell. Scientists examined what happened when a virus could no ... In trials, bacterial cells like this E. coli cell evolved resistance to a virus, prompting the virus to evolve a new way to ...
  http://www.nbcnews.com/id/46152646/ns/technology_and_science-science/