*  Mouse Major Urinary Protein 3 Research Products: Novus Biologicals
Mouse Major Urinary Protein 3 products available through Novus Biologicals. Browse our Mouse Major Urinary Protein 3 product catalog backed by our Guarantee+.
  https://www.novusbio.com/common-name/mouse-major-urinary-protein-3
*  FORCASP • View topic - Call for Papers: protein structure prediction
Protein structure prediction is an important problem in the post-genome era, which is one possible way to fill the gap between the rapid-growth sequences and the relative small number of proteins with experimentally determined structures. Despite the structural genomics initiatives and biochemical efforts, the cheapest and fastest way to obtain structural information is through prediction algorithms. Structure prediction, even in the absence of homology, is the first step of the sequence-structure-function paradigm. Great progress has been achieved in protein structure prediction during the ...
  http://www.predictioncenter.org/forcasp/viewtopic.php?f=27&t=238&sid=1876e3e0305785e9d1e8c0fbe62f483c&p=587
*  Biomolecular Structure & Design | Prospective Students
The Biomolecular Structure and Design Graduate Program at the University of Washington accepts students persuing a Ph.D. degree in biochemistry, bioengineering, biological structure, chemistry, or medicinal chemistry. Students typically persue research in biomolecular structure, molecular biophysics, protein design and engineering, protein folding, drug design, and biomolecular interactions using techniques such as xray crystallography, NMR, electron microscopy, and a variety of computational methods.
  http://depts.washington.edu/bmsd/prospective/prospective.php
*  Automated tertiary structure prediction with accurate local model quality assessment using the intfold-ts method - McGuffin -...
The IntFOLD-TS method was developed according to the guiding principle that the model quality assessment (QA) would be the most critical stage for our template-based modeling pipeline. Thus, the IntFOLD-TS method firstly generates numerous alternate models, using in-house versions of several different sequence-structure alignment methods, which are then ranked in terms of global quality using our top performing QA method-ModFOLDclust2. In addition to the predicted global quality scores, the predictions of local errors are also provided in the resulting coordinate files, using scores that represent the predicted deviation of each residue in the model from the equivalent residue in the native structure. The IntFOLD-TS method was found to generate high quality 3D models for many of the CASP9 targets, whilst also providing highly accurate predictions of their per-residue errors. This important information may ...
  http://onlinelibrary.wiley.com/doi/10.1002/prot.23120/abstract
*  Automated combined assignment of NOESY spectra and three-dimensional protein structure determination | SpringerLink
A procedure for automated protein structure determination is presented that is based on an iterative procedure during which the NOESY peak list assignment and the structure calculation are performed s
  https://link.springer.com/article/10.1023%2FA%3A1018383106236
*  PPT - Protein structures PowerPoint Presentation - ID:258068
Protein structures. Protein Structure. Why protein structure? The basics of protein Basic measurements for protein structure Levels of protein structure Prediction of protein structure from sequence Finding similarities between protein structures Classification of ...
  https://www.slideserve.com/rosine/protein-structures
*  FORCASP • View topic - Please Help: Tertiary Protein Structure Prediction
In earlier stage the Tertiary Protein Structure Prediction is unsolved problem in molecular biology. But in nowadays The evolutions in motif identification and side chain modeling present the prospect of nearly automatic model building for a large fraction of newly determined protein sequences. Anyway nice post ...
  http://www.predictioncenter.org/forcasp/viewtopic.php?f=24&t=245&sid=0f58bbd2ebb128708280bcaaf9445ef1&p=643
*  A composite model assessment score for protein structure prediction - TechyLib
το κείμενο με τίτλο A composite model assessment score for protein structure prediction σχετίζετε με Τεχνίτη Νοημοσύνη και Ρομποτική
  https://www.techylib.com/el/view/chardfriendly/a_composite_model_assessment_score_for_protein_structure_predicti
*  Statistical Structural Biology - Bioinformatics Centre - University of Copenhagen
One of the major unsolved problems in molecular biology today is the protein folding problem: given an amino acid sequence, predict the overall three-dimensional structure of the corresponding protein. It has been known since the seminal work of Christian B. Anfinsen in the early seventies that the sequence of a protein encodes its structure, but the exact details of the encoding still remain elusive.. Since the protein folding problem is of enormous practical, theoretical and medical importance - and in addition forms a fascinating intellectual challenge - it is often called the holy grail of bioinformatics. The Statistical Structural Biology group focuses on Bayesian, probabilistic models of ...
  http://www.binf.ku.dk/research/structural_bioinformatics/?get_rss=1
*  Automating the Determination of 3d Protein Structure 3.2 Databases 3.3 New Method of Determining Structural Similarity 4...
The creation of an automated method for determining 3D protein structure would be invaluable to the eld of biology and presents an interesting challenge to computer science. Unfortunately , given the current level of protein knowledge, a completely automated solution method is not yet feasible; therefore, our group has decided to integrate existing databases and theories to create a software system that assists X-ray crystallographers in specifying a particular protein structure. By breaking the problem of determining overall protein structure into small subproblems, we hope to come closer to solving a novel structure by solving each component. By generating ...
  https://www.semanticscholar.org/paper/Automating-the-Determination-of-3d-Protein-Structu-Rayly-Gaasterland/2459bc59bc43b2201742cea5682b5a31ba5d406b
*  Laboratory for Biomolecular Structure and Dynamics | RIKEN
In actual biological cellular environment, biomolecules such as proteins are generally surrounded by high concentrations of macromolecules, so-called 'macromolecular crowding' and these molecules are dynamically and co-operatively working. We will elucidate cellular events at atomic resolution by analyzing structural dynamics of biomolecules in the cellular environment mainly by using NMR spectroscopy. We will also develop and improve the technologies for sample preparations, stable-isotope labeling, NMR measurements, and data analyses. In collaboration with laboratories in Computational Biology Research Core. QBiC, we will contribute to the modeling of the cell from the viewpoint of structural dynamics of biomolecules.. ...
  http://www.riken.jp/en/research/labs/qbic/cell_dyn/biomol_struct_dyn/
*  Formation of Ordered Biomolecular Structures by the Self-assembly of Short Peptides | Protocol (Translated to Chinese)
本文描述了通过自组装的自发过程中形成高度有序的基于肽的结构。该方法利用市售的肽和普通的实验室设备。这一技术可以应用到大量的各种肽,并可能导致新的基于肽的装配体的发现。...
  https://www.jove.com/video/50946/?language=Chinese
*  275 - English
Protein structure prediction methods for drug design Thomas Lengauer was a professor of Computer …
  https://www.slideshare.net/moni4/275
*  YRC Public Data Repository - Protein Overview - FAS1 / YKL182W
The YRC PDR provides for the searching of millions of protein descriptions from many databases to find proteins and public experimental data describing those proteins produced by the YRC. The experimental data is in the form of mass spectrometry, yeast two-hybrid, protein structure prediction, light microscopy and protein complex predictions.
  http://www.yeastrc.org/pdr/yeastProteinRedirect.do?acc=YKL182W
*  YRC Public Data Repository - Protein Overview - DPB3 / YBR278W
The YRC PDR provides for the searching of millions of protein descriptions from many databases to find proteins and public experimental data describing those proteins produced by the YRC. The experimental data is in the form of mass spectrometry, yeast two-hybrid, protein structure prediction, light microscopy and protein complex predictions.
  http://www.yeastrc.org/pdr/yeastProteinRedirect.do?acc=YBR278W
*  YRC Public Data Repository - Protein Overview - PET9 / YBL030C
The YRC PDR provides for the searching of millions of protein descriptions from many databases to find proteins and public experimental data describing those proteins produced by the YRC. The experimental data is in the form of mass spectrometry, yeast two-hybrid, protein structure prediction, light microscopy and protein complex predictions.
  http://www.yeastrc.org/pdr/yeastProteinRedirect.do?acc=YBL030C
*  YRC Public Data Repository - Protein Overview - ALG14 / YBR070C
The YRC PDR provides for the searching of millions of protein descriptions from many databases to find proteins and public experimental data describing those proteins produced by the YRC. The experimental data is in the form of mass spectrometry, yeast two-hybrid, protein structure prediction, light microscopy and protein complex predictions.
  http://www.yeastrc.org/pdr/yeastProteinRedirect.do?acc=YBR070C
*  YRC Public Data Repository - Protein Overview - BGL2 / YGR282C
The YRC PDR provides for the searching of millions of protein descriptions from many databases to find proteins and public experimental data describing those proteins produced by the YRC. The experimental data is in the form of mass spectrometry, yeast two-hybrid, protein structure prediction, light microscopy and protein complex predictions.
  http://www.yeastrc.org/pdr/yeastProteinRedirect.do?acc=YGR282C
*  YRC Public Data Repository - Protein Overview - SHM2 / YLR058C
The YRC PDR provides for the searching of millions of protein descriptions from many databases to find proteins and public experimental data describing those proteins produced by the YRC. The experimental data is in the form of mass spectrometry, yeast two-hybrid, protein structure prediction, light microscopy and protein complex predictions.
  http://www.yeastrc.org/pdr/yeastProteinRedirect.do?acc=YLR058C
*  VersatileDogs.com • View topic - Dog Food
The VA Tech blurb is silly. Dogs fed unprocessed food derive a majority of their energy from fats. Dogs fed meat, fat, bones, organs, fish, eggs, etc have no lack of either fat or high-quality protein in their diet. No one is suggesting dogs (or puppies) be starved of energy producing nutrients or high-quality protein. And the fact remains that carbohydrate metabolism leads directly to a spike in blood glycogen followed by a crash. Which is exactly what one who plans to go out for 2 or 3 day should seek to avoid ...
  http://www.versatiledogs.com/forum/viewtopic.php?p=228075
*  The Protein Society : Protein Science
The foundation of TPS is our prestigious journal, Protein Science. With a storied history that includes past Editors in Chief: Hans Neurath, Mark Hermodson, and current editor, Brian Matthews, and a reputation for featuring leading-edge protein research through innovative means, the Journal has grown to become the premier platform for scientists all around the world with a trans-disciplinary focus on proteins. Subject matter encompasses protein structure, function, design, and applications, exploring protein's critical roles in molecular and cell biology, genetics, proteomics, evolution, and more.. ...
  http://www.proteinsociety.org/page/publications
*  AMINO-ACID CONTENT OF FOODS AND BIOLOGICAL DATA ON PROTEINS
3. Dry legumes and legume products (concluded) - Légumineuses et produits dérivés (fin) - Legumbres secas y productos de legumbres (conclusión) ...
  http://www.fao.org/docrep/005/AC854T/AC854T59.htm
*  Detecting internally symmetric protein structures | BMC Bioinformatics | Full Text
Many protein chains are made of repeating units of similar structure, which are often arranged in a beautifully symmetric manner. Some well-known examples are the 8-fold symmetric "TIM" barrel folds, the β-blade propellers, the α/α superhelices, the leucine-rich repeat horseshoe-shape structures, etc. (See, for example, a review by Andrade et al. [1]). Occurrence of symmetric structures poses a number of questions: What sequence and energetic features make repeating units fold into a similar structure and cause them to arrange in a symmetric pattern? What is the biological function of such symmetric chains? How are they different from the symmetric structures of multimeric complexes, which are formed by symmetrically assembling non-symmetric monomers? How many symmetric chains and what types of symmetry exist in the ...
  https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-11-303
*  CASL :: Publications
Khoury, G. A.; Liwo, A.; Khatib, F.; Zhou, H.; Chopra, G.; Bacardit, J.; Bortot, L. O.; Faccioli, R. A.; Deng, X.; He, Yi; Krupa, P.; Li, J.; Mozolewska, M. A.; Sieradzan, A. K.; Smadbeck, J.; Wirecki, T.; Cooper, S.; Flatten, J.; Xu, K.; Baker, D.; Cheng, J.; Delbem, A. C. B.; Floudas, C. A.; Keasar, C.; Levitt, M.; Popović, Z.; Scheraga, H. A.; Skolnick, J.; Crivelli, S. N.; Players, F. WeFold: A coopetition for protein structure prediction. Proteins: Structure, Function, and Bioinformatics 2014, 82 (9), 1850-1868 ...
  http://titan.princeton.edu/publications/
*  De novo peptide sequencing using ion peak intensity and amino acid cleavage intensity ratio - Semantic Scholar
MOTIVATION Peptide-sequencing methods by mass spectrum use the following two approaches: database searching and de novo sequencing. The database-searching approach is convenient; however, in cases wherein the corresponding sequences are not included in the databases, the exact identification is difficult. On the other hand, in the case of de novo sequencing, no preliminary information is necessary; however, continuous amino acid sequence peaks and the differentiation of these peaks are required. It is, however, very difficult to obtain and differentiate the peaks of all amino acids by using an actual spectrum. We propose a novel de novo sequencing approach using not only mass-to-charge ratio but also ion peak intensity and amino acid cleavage intensity ratio (CIR). RESULTS Our method compensates for any undetectable amino acid peak intervals by estimating the amino acid set and the probability of peak expression based on amino acid CIR. It provides more accurate identification of sequences ...
  https://www.semanticscholar.org/paper/De-novo-peptide-sequencing-using-ion-peak-intensit-Kanazawa-Anyoji/086aac7010dcff346f64d72180f6690e98312adb