*  Hydrophobic Amino Acid Composition Patterns over Secondary Structure Elements of Proteins - IEEE Conference Publication
... hydrophobicity provides essential insights into the folding structure of pr ... As evidenced by a buried core of hydrophobic residues within globular proteins, ...
  http://ieeexplore.ieee.org/document/4534922/?reload=true&arnumber=4534922&contentType=Conference+Publications
*  Length-dependent stability and strand length limits in antiparallel beta -sheet secondary structure. - Semantic Scholar
... which would be impossible to probe with alpha-helices embedded in folded proteins. Here, we use designed peptides to examine ... suggest that there may be an intrinsic limit to strand length for most sequences in antiparallel beta-sheet secondary structure ... Designed peptides that fold autonomously to specific conformations in aqueous solution are useful for elucidating protein ... secondary structural preferences. For example, autonomously folding model systems have been essential for establishing the ...
  https://www.semanticscholar.org/paper/Length-dependent-stability-and-strand-length-limit-Stanger-Syud/b667627dfcb7c97158c6cac280f903eeaee7d278
*  Protein Secondary Structure - Olis, Inc.
Protein Secondary Structure Protein secondary structure is an important consideration when studying protein folding, protein ... This spectra can provide a qualitative snapshot of the protein structure or the secondary structure composition of a protein ... Protein secondary structure can also be used to monitor protein folding and unfolding. An equilibrium study consists of ... 2014). Secondary Structure of Corona Proteins Determines the Cell Surface Receptors Used by Nanoparticles.. Journal of Physical ...
  http://olisweb.com/applications/protein-secondary-structure/
*  mkdssp command man page - dssp | ManKier
This means you do need to have a full and valid 3D structure for a protein to be able to calculate the secondary structure. ... DSSP is a database of secondary structure assignments (and much more) for all protein entries in the Protein Data Bank (PDB) ... The DSSP program works by calculating the most likely secondary structure assignment given the 3D structure of a protein. It ... it cannot guess the secondary structure for a mutated protein for which you don't have the 3D structure.. DSSP File Format. The ...
  https://www.mankier.com/1/mkdssp
*  PPT - Lecture 14 Secondary Structure Prediction PowerPoint Presentation - ID:80412
Lecture 14 Secondary Structure Prediction. Bioinformatics Center IBIVU. Protein structure . Linus Pauling (1951). Slideshow ... DSSP (Dictionary of Secondary Structure of a Protein) - assignssecondary structure to proteins which have a crystal (x-ray) or ... Secondary Structure *An easier question - what is the secondary structure when the 3D structure is known? ... Lecture 14 Secondary Structure Prediction. Bioinformatics Center IBIVU. Protein structure . Linus Pauling (1951). ...
  https://www.slideserve.com/LeeJohn/lecture-14
*  A survey of machine learning methods for secondary and supersecondary protein structure prediction. - NextBio article
A survey of machine learning methods for secondary and supersecondary protein structure prediction. Hui Kian Ho, Lei Zhang, ... A survey of machine learning methods for secondary and supersecondary protein structure prediction. Methods in molecular ... In this chapter we provide a survey of protein secondary and supersecondary structure prediction using methods from machine ... We provide background on the secondary and supersecondary structures that we discuss, the features used to describe them, and ...
  http://www.nextbio.com/b/search/article.nb?id=22987348
*  Protein secondary structure - Wikipedia
The Dictionary of Protein Secondary Structure, in short DSSP, is commonly used to describe the protein secondary structure with ... Protein secondary structure is the three dimensional form of local segments of proteins. The two most common secondary ... Distant relationships between proteins whose primary structures are unalignable can sometimes be found by secondary structure. ... Kihara D (Aug 2005). "The effect of long-range interactions on the secondary structure formation of proteins". Protein Science ...
  https://en.wikipedia.org/wiki/Protein_secondary_structure
*  Predicting Protein Secondary Structure Using a Neural Network
... This example shows a secondary structure prediction method that ... 1] Rost, B., and Sander, C., "Prediction of protein secondary structure at better than 70% accuracy", Journal of Molecular ... 2] Holley, L.H. and Karplus, M., "Protein secondary structure prediction with a neural network", PNAS, 86(1):152-6, 1989. ... 3] Kabsch, W., and Sander, C., "How good are predictions of protein secondary structure?", FEBS Letters, 155(2):179-82, 1983. ...
  http://www.mathworks.com/examples/bioinfo/mw/bioinfo_product-secstructnnetdemo-predicting-protein-secondary-structure-using-a-neural-network
*  Database of Protein Secondary Structure Needed
Does anyone know where I can find a database of protein secondary ,structure on-line? Ideally, for each protein in the database ... Database of Protein Secondary Structure Needed. Catherine Letondal letondal at nefertiti.pasteur.fr Tue Sep 19 07:14:20 EST ... I would ,find its amino-acid sequence and *known* (not predicted) secondary ,structure. , , Thanks in advance for any replies, ... More information about the Proteins mailing list. ... Database of Protein Secondary Structure Needed *Next message: ...
  http://www.bio.net/bionet/mm/proteins/2000-September/008608.html
*  corelation between codon and protein secondary structures
... corelation between codon and protein secondary structures *Next message: correlation between codon and protein secondary ... corelation between codon and protein secondary structures *Next message: correlation between codon and protein secondary ... corelation between codon and protein secondary structures. CCoburn CCoburn at pofvax.pnb.sunysb.edu Wed Jan 7 18:58:10 EST 1998 ... Argos P. Title Protein secondary structural types are differentially coded on messenger RNA. Source Protein Science. Vol 5(10 ...
  http://www.bio.net/bionet/mm/proteins/1998-January/006086.html
*  List of protein secondary structure prediction programs - Wikipedia
List of protein secondary structure prediction programs List of protein structure prediction software Protein structure ...
  https://en.wikipedia.org/wiki/List_of_protein_secondary_structure_prediction_programs
*  Protein Secondary Structure
The Secondary Structure of Proteins Biochemistry Lecture Aid by Frieda Reichsman This presentation is designed as an aid in ... teaching material on the secondary structures of proteins. Buttons are intended for the instructor's use and are labeled with ...
  http://www.moleculesinmotion.com/SecStrLA/menu.html
*  PREDATOR protein secondary structure prediction API How To's | ProgrammableWeb
The service predicts secondary protein structures by analyzing amino acid sequences submitted and detecting hydrogen-bonded ... The API returns indicators of hydrogen-bonded residues detected within the input data for use in secondary structure prediction ... Potential for hydrogen bonds is associated with resulting secondary structures, providing a partial indicator that may be used ...
  https://www.programmableweb.com/api/predator-protein-secondary-structure-prediction/how-to
*  CiteSeerX - Citation Query 119931, A decision graph explanation of protein secondary structure prediction
A decision graph explanation of protein secondary structure prediction ... Early work on proteins identified the existence of helices and extended sheets in protein secondary structures, a high-level ... Early work on proteins identified the existence of helices and extended sheets in protein secondary structures, a high-level ... directly from protein sequence. Therefore, analyzing protein secondary structure is indispensable. In the previous work, ...
  http://citeseerx.ist.psu.edu/showciting?cid=1508995
*  Homology-derived Secondary Structure of Proteins - Wikipedia
Protein Data Bank (PDB) STING Schneider, R., de Daruvar, A., & Sander, C. (1997). "The HSSP database of protein structure- ... HSSP is also a database of homology-based implied protein structures. ... This database has the information of the alignment of all available homologs of proteins from the PDB database As a result of ... HSSP is a database that combines structural and sequence information about proteins. ...
  https://en.wikipedia.org/wiki/Homology-derived_Secondary_Structure_of_Proteins
*  Computational Prediction of Protein Secondary Structure from Sequence - Current Protocols
Secondary structure of proteins refers to local and repetitive conformations, such as α‐helices and β‐strands, which occur in ... in protein structures. Computational prediction of secondary structure from protein sequences has a long history with three ... Combining prediction of secondary structure and solvent accessibility in proteins. Proteins Struct. Funct. Bioinform. 59:467‐ ... The effect of long‐range interactions on the secondary structure formation of proteins. Protein Sci. 14:1955‐1963. doi: 10.1110 ...
  http://www.currentprotocols.com/WileyCDA/CPUnit/refId-ps0203.html?quicktabs_cp=toc
*  Benchmarking protein secondary structure prediction for protein fold recognition - UCL Discovery
Benchmarking protein secondary structure prediction for protein fold recognition. Proteins: Structure, Function, and Genetics ... PREDICTION, PROTEIN, recognition, secondary, Structure, Benchmarking, protein, protein fold. UCL classification:. UCL , School ... Benchmarking protein secondary structure prediction for protein fold recognition. Keywords:. ...
  http://discovery.ucl.ac.uk/103194/
*  "Secondary Protein Structure Prediction Combining Protein Structural Cl" by Jonathan Walz
Neural networks tend to work for secondary structure prediction due to the pattern recognition nature of the task. Procedural ... Contact number, relative surface accessibility, and protein structure can be combined together in seven different ways and have ... protein structural class[16], and other data. While these studies have focused on the improvements by adding individual data, ... Using neural networks to predict the structure of proteins from amino acid sequences is a very common technique. Accuracy of ...
  https://digitalcommons.csbsju.edu/honors_theses/109/
*  Effects of heat treatment on the protein secondary structure and pigment microenvironment in photosystem 1 complex | Springer...
The protein secondary structure and pigments' microenvironment in photosystem 1 (PS1) complexes were studied in the temperature ... Shi, H., Xiong, L., Yang, K.Y., Tang, C.Q., Kuang, T.Y., Zhao, N.M.: Protein secondary structure and conformational changes of ... The protein secondary structure and pigments' microenvironment in photosystem 1 (PS1) complexes were studied in the temperature ... He, W.-Z., Newell, W.R., Haris, P.I., Chapman, D., Barber, J.: Protein secondary structure of the isolated photosystem II ...
  https://rd.springer.com/article/10.1007/s11099-005-0085-z
*  Protein and RNA multiple sequence alignment, protein secondary structure prediction, trees, sub-family and function analysis...
Day 3 concentrates on protein secondary structure prediction with JPred version 4 as well as protein sub-family analysis to ... Protein and RNA multiple sequence alignment, protein secondary structure prediction, trees, sub-family and function analysis ... Protein and RNA multiple sequence alignment, protein secondary structure prediction, trees, sub-family and function analysis ... For example, Jalview supports 8 popular methods for multiple sequence alignment, prediction of protein secondary structure by ...
  http://www.jalview.org/training/training-courses/Protein-and-RNA-multiple-sequence-alignment-protein-secondary-structure
*  Voet Chapter 8 - C hapter 8 Three Dimensional Structures o f Proteins Secondary Structure A T he Peptide Group B Helical...
Helical Structures C. B eta Structures D. N ... C hapter 8 Three Dimensional Structures o f Proteins Secondary ... Dimensional Structures of Proteins 1 • Secondary Structure A. The Peptide Group B. Helical Structures C. Beta Structures D. ... SECONDARY STRUCTURE A polymer's secondary structure (2 0 structure) is defined as the local conformation of its backbone. For ... Globu.lar Proteins Iuterpretation of Protein X-Ray and NMR Structures Tertiary Structure C. Structural Bioinfonnatics 4 • ...
  https://www.coursehero.com/file/6417396/Voet-Chapter-8/
*  Consultar por Materia - E-Prints Complutense
Bonilla, L.L. y Carpio, Ana y Prados, A. (2015) Theory of force-extension curves for modular proteins and DNA hairpins. ... Álvarez, Gabriel y Martínez Alonso, Luis y Medina Reus, Elena (2015) Fine structure in the large n limit of the non-hermitian ... Uhlmann, Markus y Kawahara, Genta y Pinelli, Alfredo (2010) Travelling-waves consistent with turbulence-driven secondary flow ... Curado, Evaldo M. F. y Tempesta, Piergiulio y Tsallis, Constantino (2016) A new entropy based on a group-theoretical structure. ...
  http://eprints.ucm.es/view/subjects/A=5F11=5F291.html
*  plague facts, information, pictures | Encyclopedia.com articles about plague
is the process by which the body forms a thickened mass of blood cells and protein to stop bleeding.. The pneumonic form of ... Pneumonic plague may occur as a direct infection (primary) or as a result of untreated bubonic or septicemic plague (secondary ... this particular outbreak of plague had a major impact on the economy and political structure of Europe. ... The disease returned, albeit with diminished force, in secondary national epidemics in 1360-2, 1368-9, 1375, and 1390-1. After ...
  https://www.encyclopedia.com/medicine/diseases-and-conditions/pathology/plague
*  JoVE | Peer Reviewed Scientific Video Journal - Methods and Protocols
Using either photoactivatable (PAFP) or photoswitchable (PSFP) fluorescent proteins fused to proteins of interest, or organic ... By using the striped-illumination approach, we are able to observe the dynamics of immune complex deposits on secondary ... We have demonstrated the in-vivo performance of the technique by imaging three-dimensional structures of developing Drosophila ... or meiotic functions of the protein under investigation. The post-meiotic phenotype of a mutant of such a protein could be ...
  https://www.jove.com/visualize/abstract/23300962/long-term-in-vivo-imaging-of-multiple-organs-at-the-single-cell-level