*  Chou-Fasman method - Wikipedia
List of protein structure prediction software Chou PY, Fasman GD (1974). "Prediction of protein conformation". Biochemistry. 13 ... Chou PY, Fasman GD (1978). "Empirical predictions of protein conformation". Annu Rev Biochem. 47: 251-276. doi:10.1146/annurev. ... doi:10.1093/protein/11.5.345. PMID 9681866. Chen H, Gu F, Huang Z (2006). "Improved Chou-Fasman method for protein secondary ... Kyngas J, Valjakka J (1998). "Unreliability of the Chou-Fasman parameters in predicting protein secondary structure". Protein ...
  https://en.wikipedia.org/wiki/Chou%E2%80%93Fasman_method
*  David Chilton Phillips - Wikipedia
Sternberg, Michael Joseph Ezra (1977). Studies of protein conformation (DPhil thesis). University of Oxford. Phillips, D. C.; ...
  https://en.wikipedia.org/wiki/David_Chilton_Phillips
*  Protein secondary structure - Wikipedia
The original beta-sheet conformation article.) Pauling L, Corey RB, Branson HR (1951). "The structure of proteins; two hydrogen ... Amino acids that prefer to adopt helical conformations in proteins include methionine, alanine, leucine, glutamate and lysine ... Chou PY, Fasman GD (1978). "Empirical predictions of protein conformation". Annual Review of Biochemistry. 47: 251-76. doi: ... Chou PY, Fasman GD (Jan 1974). "Prediction of protein conformation". Biochemistry. 13 (2): 222-45. doi:10.1021/bi00699a002. ...
  https://en.wikipedia.org/wiki/Protein_secondary_structure
*  C19orf67 - Wikipedia
Chou, Peter Y.; Fasman, Gerald D. (1974-01-15). "Prediction of protein conformation". Biochemistry. 13 (2): 222-245. doi: ... UPF0575 protein C19orf67 is a protein which in humans (Homo sapiens) is encoded by the C19orf67 gene. Orthologs of C19orf67 are ... Protein Engineering, Design and Selection. 20 (11): 561-567. doi:10.1093/protein/gzm057. ISSN 1741-0126. "Genomatix - NGS Data ... The protein is expressed at low levels throughout the body with the exception of the testis and breast tissue. Where it is ...
  https://en.wikipedia.org/wiki/C19orf67
*  Anders Krogh - Wikipedia
Hamelryck T, Kent JT, Krogh A (2006). "Sampling Realistic Protein Conformations Using Local Structural Bias". PLoS Comput. Biol ... Applications to protein modeling". J. Mol. Biol. 235 (5): 1501-31. doi:10.1006/jmbi.1994.1104. PMID 8107089. Krogh A, Mian IS, ... Krogh A, Larsson B, von Heijne G, Sonnhammer EL (2001). "Predicting transmembrane protein topology with a hidden Markov model: ... Winther O, Krogh A (2004). "Teaching computers to fold proteins". Phys. Rev. E. 70 (3): 030903. doi:10.1103/PhysRevE.70.030903 ...
  https://en.wikipedia.org/wiki/Anders_Krogh
*  Neuraminidase - Wikipedia
β-Sheets predominate as the secondary level of protein conformation. Recent emergence of oseltamivir and zanamivir resistant ... There are two major proteins on the surface of influenza virus particles. One is the lectin haemagglutinin protein with three ... The first step involves the distortion of the α-sialoside from a 2C5 chair conformation (the lowest-energy form in solution) to ... which allow for secretion of FLAG-tagged proteins and further purification. The enzymatic mechanism of influenza virus ...
  https://en.wikipedia.org/wiki/Neuraminidase
*  Alpha-synuclein - Wikipedia
McLean PJ, Kawamata H, Ribich S, Hyman BT (Mar 2000). "Membrane association and protein conformation of alpha-synuclein in ... The majority form of the protein, and the one most investigated, is the full-length protein of 140 amino acids. Other isoforms ... Certain sections of the alpha-synuclein protein may play a role in the tauopathies. A prion form of the protein alpha-synuclein ... "The precursor protein of non-A beta component of Alzheimer's disease amyloid is a presynaptic protein of the central nervous ...
  https://en.wikipedia.org/wiki/Alpha-synuclein
*  David E. Clemmer - Wikipedia
... studying protein folding and protein conformation in the gas phase, using techniques such as Ion-mobility spectrometry. In 1995 ... Shelimov, K.B.; Clemmer, D.E.; Hudgins, R.R.; Jarrold, M.F. (1997). "Protein Structure in Vacuo: The Gas Phase Conformations of ... Clemmer, David E.; Hudgins, Robert R.; Jarrold, Martin F. (October 1995). "Naked Protein Conformations: Cytochrome c in the Gas ... Clemmer's work has applications in the life sciences for understanding the conformation of structures in large protein ...
  https://en.wikipedia.org/wiki/David_E._Clemmer
*  Surface plasmon resonance microscopy - Wikipedia
Johnson, A, E (2005). "Fluoroscence approaches for determining protein conformations, Iinteractions and mechanisms at membranes ... Immobilization of the protein was done by flowing protein solutions through the PDMS micro channels. Then PDMS was removed from ... Three-component protein array containing the proteins human fibrinogen, ovalbumin, and bovine IgG is shown in Figure 17, SPR ... One can find protein-protein interaction and on-chip peptide distribution with high spatial resolution using subjected ...
  https://en.wikipedia.org/wiki/Surface_plasmon_resonance_microscopy
*  Michael Levitt - Wikipedia
Levitt, M. (1976). "A simplified representation of protein conformations for rapid simulation of protein folding". Journal of ... Michael Levitt publications indexed by Google Scholar Levitt, Michael (1972). Conformation analysis of proteins (PhD thesis). ... He has also worked on simplified representations of protein structure for analysing folding and packing, as well as developing ... Xia, Y.; Huang, E. S.; Levitt, M.; Samudrala, R. (2000). "Ab initio construction of protein tertiary structures using a ...
  https://en.wikipedia.org/wiki/Michael_Levitt
*  Structural inheritance - Wikipedia
Serio TR, Cashikar AG, Kowal AS, Sawicki GJ, Lindquist SL (2001). "Self-perpetuating changes in Sup35 protein conformation as a ... Soto C, Castilla J (July 2004). "The controversial protein-only hypothesis of prion propagation". Nat. Med. 10 Suppl (7): S63-7 ... Examples of structural inheritance include the propagation of prions, the infectious proteins of diseases such as scrapie (in ... Prions based on heritable protein structure also exist in yeast. Structural inheritance has also been seen in the orientation ...
  https://en.wikipedia.org/wiki/Structural_inheritance
*  Michael Sternberg - Wikipedia
Studies of protein conformation (DPhil thesis). University of Oxford. http://www3.imperial.ac.uk/cisbio Michael Sternberg's ... Sternberg's research interests are in protein structure prediction, protein function prediction, prediction of macromolecular ... Protein Engineering: a practical approach and Protein Structure Prediction: a practical approach. During his DPhil research at ... Zvelebil, M. J.; Barton, G. J.; Taylor, W. R.; Sternberg, M. J. (1987). "Prediction of protein secondary structure and active ...
  https://en.wikipedia.org/wiki/Michael_Sternberg
*  PRNP - Wikipedia
Damberger FF, Christen B, Pérez DR, Hornemann S, Wüthrich K (October 2011). "Cellular prion protein conformation and function ... PRNP (PRioN Protein) is the human gene encoding for the major prion protein PrP (for prion protein), also known as CD230 ( ... A strong interaction exists between PrP and cochaperone Hsp70/Hsp90 organizing protein/Stress-induced protein 1 (hop (protein)/ ... in the prion protein. Others insert additional amino acids into the protein or cause an abnormally short protein to be made. ...
  https://en.wikipedia.org/wiki/PRNP
*  Michael Thorpe - Wikipedia
These are used to determine dynamical pathways between different protein conformations using Monte Carlo methods. Proteins are ... The flexible regions in proteins and protein complexes are determined from the x-ray structure as determined ... to better understand the evolution and function of proteins and protein complexes. Gohlke, H., & Thorpe, M.F. (2006). A Natural ... His early research was on network glasses, but has recently focused on applying his knowledge to the study of protein dynamics ...
  https://en.wikipedia.org/wiki/Michael_Thorpe
*  Wang and Landau algorithm - Wikipedia
P. Ojeda & M. Garcia (Jul 2010). "Electric Field-Driven Disruption of a Native beta-Sheet Protein Conformation and Generation ... P. Ojeda and M. Garcia and A. Londono and N.Y. Chen (Feb 2009). "Monte Carlo Simulations of Proteins in Cages: Influence of ... For instance, it has been applied to the solution of numerical integrals and the folding of proteins. The Wang-Landau sampling ...
  https://en.wikipedia.org/wiki/Wang_and_Landau_algorithm
*  Electric dipole moment - Wikipedia
Ojeda, P.; Garcia, M. (2010). "Electric Field-Driven Disruption of a Native beta-Sheet Protein Conformation and Generation of a ... Dipole moments can be found in common molecules such as water and also in biomolecules such as proteins. By means of the total ...
  https://en.wikipedia.org/wiki/Electric_dipole_moment
*  Universal mind - Wikipedia
Hameroff (1996) conceptualizes consciousness as successive quantum superposition of the tubulin protein conformations in the ...
  https://en.wikipedia.org/wiki/Universal_mind
*  Orchestrated objective reduction - Wikipedia
... and that changes in tubulin protein-conformation driven by GTP conversion would result in a prohibitive energy requirement. ... Microtubules are made up of tubulin protein subunits. The tubulin protein dimers of the microtubules have hydrophobic pockets ... Orchestration refers to the hypothetical process by which connective proteins, such as microtubule-associated proteins (MAPs), ... For the second claim they stated that no GTP conversion is needed since (in that version of the theory) the conformation- ...
  https://en.wikipedia.org/wiki/Orchestrated_objective_reduction
*  Celivarone - Wikipedia
Ion channel mutations can alter protein conformation, and so change the amount of current flowing through these channels. Due ...
  https://en.wikipedia.org/wiki/Celivarone
*  Distance geometry problem - Wikipedia
In this field, the main interest is on proteins, because discovering their three-dimensional conformation allows us to get ... It includes many force fields for attempting the prediction of protein conformations from their chemical structure only. One of ... Crippen and Havel are two pioneers of DGP, and they co-authored the book "Distance Geometry and Molecular Conformation", 1988. ... Crippen, G.M.; Havel, T.F. (1988). "Distance Geometry and Molecular Conformation". John Wiley & Sons. Biswas, P.; Lian, T.; ...
  https://en.wikipedia.org/wiki/Distance_geometry_problem
*  De novo protein structure prediction - Wikipedia
... produce candidate protein conformations. As a protein approaches its correctly folded, native state, entropy and free energy ... Coarse-grained protein models allow for de novo structure prediction of small proteins, or large protein fragments, in a short ... Protein structure prediction Protein structure prediction software Protein design "Editorial: So much more to know". Science. ... CASP Folding@Home HPF project Foldit UniProtKB Protein Data Bank (PDB) Expert Protein Analysis System - links to protein ...
  https://en.wikipedia.org/wiki/De_novo_protein_structure_prediction
*  Kent distribution - Wikipedia
Hamelryck T, Kent JT, Krogh A (2006) Sampling Realistic Protein Conformations Using Local Structural Bias[permanent dead link ... Kent, J. T., Hamelryck, T. (2005). Using the Fisher-Bingham distribution in stochastic models for protein structure. In S. ... Graphical models and directional statistics capture protein structure. In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds ...
  https://en.wikipedia.org/wiki/Kent_distribution
*  Deoxycytidine kinase - Wikipedia
... dCK has several different protein conformations but its conformation depends on the nucleoside or nucleotide it binds to. dCK ... One hypothesis for the functionality of the "open" conformation is that the "open" conformation may assist in the initial ... conformation as the catalytically active conformation since it catalyzes the phosphoryl transfer between phosphoryl donors and ... This change in conformation when a specific phosphoryl donor is bound in the nucleotide binding site determines which ...
  https://en.wikipedia.org/wiki/Deoxycytidine_kinase
*  Large-conductance mechanosensitive channel - Wikipedia
Bacterial mechanosensitive channels, MscL and MscS, reflect an intimate coupling of protein conformation with the mechanics of ... MscL in Pfam UMich Orientation of Proteins in Membranes protein/pdbid-2oar As of this edit, this article uses content from "1.A ... The generalized transport reactions are: (a) proteins (in) → proteins (out) (b) ions (out) ⇌ ions (in) (c) osmolytes (in) ⇌ ... The pore diameter of MscL in the open state has been estimated to ~3 nm, which accommodates the passage of small protein up to ...
  https://en.wikipedia.org/wiki/Large-conductance_mechanosensitive_channel
*  Walker motifs - Wikipedia
Upon nucleotide hydrolysis the loop does not significantly change the protein conformation, but stays bound to the remaining ... These include ATP synthase (α and β subunits), myosin, transducin, helicases, kinases, AAA proteins, G-proteins, RecA, protein ... in nucleotide-binding and other proteins". Protein Engineering. 15 (10): 783-798. doi:10.1093/protein/15.10.783. PMID 12468712 ... The Walker A motif is best known for its presence in ATP- and GTP-binding proteins, and is also found in a variety of proteins ...
  https://en.wikipedia.org/wiki/Walker_motifs