*  Arrayit Corporation ARYC - Services - eChips - Peptide and Oligonucleotide Microarrays - Microarrays Life Sciences Diagnostics...
... and microarray data analysis. Our high-throughput microarray cleanroom facilities enable a microarray service to meet the needs ... If you are designing your own oligonucleotide target sequences, we recommend Array Designer by Premier Biosoft as a convenient ... two hybrid analysis ... Any sequence, any organism, any application *Arrays of DNA, RNA ... There are additional charges for oligonucleotide and peptide design and synthesis. For example, an order of 192 sequences (1/2 ...
  http://arrayit.com/Services/Microarray_eChips/microarray_echips.html
*  Algorithm-driven Artifacts in median polish summarization of Microarray data | BMC Bioinformatics | Full Text
Li C, Wong WH: Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection. Proc Natl ... which is based on the probe sequence. Other multi-array methods which don't discard MM intensities exist, one of them being ... 4 and 5 arrays upon incremental noise addition by adding values from real arrays to values from permutated arrays before ... In the present paper, we extend the analysis performed by [26], aiming to shed more light on the behaviour of multi-array ...
  https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-11-553
*  Dr Marta Milo - Marta Milo - Research - Biomedical Science - The University of Sheffield
In high-density oligonucleotide arrays as well as in cDNA spotted arrays the aim is to extract from pixel intensity signals an ... Next Generation Sequencing. I am currently working to extend the use of probabilistic models to Next Generation Sequencing data ... We hypothesised that analysis of ACS, at the time of an acute event and throughout recovery up to 90 days post event, would ... Specifically for oligonucleotide arrays, such as Affymetrix GeneChip®, multiple probes are associated with each target paired ...
  https://www.sheffield.ac.uk/bms/research/milo/research
*  Preprocessing Affymetrix® Microarray Data at the Probe Level
... the probe sequence information of the HuGeneFL array is also required. The Affymetrix support site provides probe sequence ... 4] Bolstad, B.M., et al., "A comparison of normalization methods for high density oligonucleotide array data based on variance ... Retrieve gene expression data series (GSE) from the NCBI Gene Expression Omnibus (GEO) and perform basic analysis on the ... Note: There are 496 probes on a HuGeneFL array that do not have sequence information; the affinities for these probes were NaN. ...
  http://www.mathworks.com/examples/bioinfo/mw/bioinfo_product-affypreprocessdemo-preprocessing-affymetrix-reg-microarray-data-at-the-probe-level?s_cid=rlcnt_ME
*  Oligonucleotide Array Sequence Analysis | Profiles RNS
Oligonucleotide Array Sequence Analysis*Oligonucleotide Array Sequence Analysis. *Oligodeoxyribonucleotide Array Sequence ... "Oligonucleotide Array Sequence Analysis" by people in UAMS Profiles by year, and whether "Oligonucleotide Array Sequence ... "Oligonucleotide Array Sequence Analysis" is a descriptor in the National Library of Medicine's controlled vocabulary thesaurus ... Below are the most recent publications written about "Oligonucleotide Array Sequence Analysis" by people in Profiles over the ...
  https://uams-triprofiles.uams.edu/profiles/display/107231
*  Influence of age, sex, and strength train... & related info | Mendeley
Oligonucleotide Array Sequence Analysis. *Physical Education and Training. *Reverse Transcriptase Polymerase Chain Reaction ... These significant differences suggest that in the analysis of skeletal muscle gene expression issues of sex, age, and habitual ... hybridized to cDNA filter microarrays representing approximately 4,000 known human genes and comparisons were made among arrays ...
  https://www.mendeley.com/research-papers/influence-age-sex-strength-training-human-muscle-gene-expression-determined-microarray-9/
*  Rhabdomyosarcoma | Cancer Genetics Web
Oligonucleotide Array Sequence Analysis. *Adolescents. *Forkhead Box Protein O1. *Mutation. *PAX7. *Oncogene Fusion Proteins ... Further bioinformatic analysis of the SNP array data disclosed genetic heterogeneity, in the form of subclonal chromosomal ... Using a luciferase reporting system and sequence analysis, the potential target of miR-411-5p was identified as sprouty homolog ... Here we studied 60 RMSs using whole-exome/-transcriptome sequencing, copy number (CN) and DNA methylome analyses to unravel the ...
  http://www.cancerindex.org/geneweb/X2002.htm
*  The effect of prior assumptions over the weights in BayesPI with application to study protein-DNA interactions from ChIP-based...
Oligonucleotide Array Sequence Analysis*. Sequence Analysis, DNA. Chemical. Reg. No./Substance: 0/DNA-Binding Proteins; 9007-49 ... TF Name (consensus sequence length). Activated in stress conditions. BayesPI - Gaussian prior. BayesPI - Laplace prior. BayesPI ... Buck MJ,Lieb JD,ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin ... Nowadays, chromatin immunoprecipitation followed by massively paralleled sequencing (ChIP-Seq) is being used widely in various ...
  http://www.biomedsearch.com/nih/effect-prior-assumptions-over-weights/20684785.html
*  CASP6 | Cancer Genetics Web
Oligonucleotide Array Sequence Analysis. *Antineoplastic Agents. *Lung Cancer. *Dose-Response Relationship, Drug ... array copy number analysis.. METHODS: We used conventional cytogenetics, FISH, and multicolor FISH to characterize the ... Expression analysis of caspase-6, caspase-9 and BNIP3 in prostate cancer.. Tumori. 2010 Jan-Feb; 96(1):138-42 [PubMed] Related ... Literature Analysis. Mouse over the terms for more detail; many indicate links which you can click for dedicated pages about ...
  http://www.cancerindex.org/geneweb/CASP6.htm
*  ACSL3 | Cancer Genetics Web
Microarray Analysis. *Estrogen Receptors. *Androgen Antagonists. *Oligonucleotide Array Sequence Analysis. *Lipid Metabolism ... Analysis of the ACSL3 promoter sequence identified two imperfect PPAR-responsive elements (PPRE) located in the ACSL3 promoter ... were used for Illumina expression array analysis. Findings were confirmed using quantitative real-time PCR (qRT-PCR) in the ... The amino acid sequence of this isozyme is 92% identical to that of rat homolog. Two transcript variants encoding the same ...
  http://www.cancerindex.org/geneweb/ACSL3.htm
*  SEMA3F | Cancer Genetics Web
Oligonucleotide Array Sequence Analysis. *Cell Surface Receptors. *Cell Proliferation. *Transcription. *Chromosome Deletion ... Array-based comparative genomic hybridization analysis was performed on 21 malignant mesothelioma (MM) samples (16 primary cell ... In addition, two sequence-tagged site markers (NLJ-003 and NL3-001) located in the Alu-PCR clone 20 region (AP20) and lung ... Literature Analysis. Mouse over the terms for more detail; many indicate links which you can click for dedicated pages about ...
  http://www.cancerindex.org/geneweb/SEMA3F.htm
*  IRF7 | Cancer Genetics Web
Oligonucleotide Array Sequence Analysis. *Base Sequence. *Cell Cycle. *DNA Methylation. *Breast Cancer ... Analysis of gene expression array in TSC2-deficient AML cells reveals IRF7 as a pivotal factor in the Rheb/mTOR pathway.. Cell ... After comparative treatments with FTS or rapamycin or by re-expression of TSC2, we carried out a gene array analysis. This ... Transcripional effects of TUSC2 in MPM were assessed through expression array analysis of TUSC2-transfected MPM cells.. RESULTS ...
  http://www.cancerindex.org/geneweb/IRF7.htm
*  CAV2 | Cancer Genetics Web
Oligonucleotide Array Sequence Analysis. *Chromosome 7. *Neoplasm Invasiveness. *Western Blotting. *Zinc Finger E-box-Binding ... as demonstrated through in silico analysis of gene datasets and immunohistochemical analysis of tumor samples. In vitro ... as detected via semi-quantitative RT-PCR and immunoblotting analysis. Furthermore, confocal microscopy analysis performed on ... Literature Analysis. Mouse over the terms for more detail; many indicate links which you can click for dedicated pages about ...
  http://www.cancerindex.org/geneweb/CAV2.htm
*  PDCD2 | Cancer Genetics Web
Oligonucleotide Array Sequence Analysis. *RT-PCR. *Leukemic Gene Expression Regulation. *Antineoplastic Agents ... we performed electronic profiling of expressed sequences mapped to this region. This analysis suggested the gene PDCD2 ... Literature Analysis. Mouse over the terms for more detail; many indicate links which you can click for dedicated pages about ... Nevertheless, mutation analyses failed to identify mutations in the coding region of PDCD2 in nine lymphomas with FISH-proved ...
  http://www.cancerindex.org/geneweb/PDCD2.htm
*  MicroRNA miR-1271 | Cancer Genetics Web
Oligonucleotide Array Sequence Analysis. *microRNA mir-1271. *microRNA mir-141. *MIRN183 microRNA, human ... Annotated database entry including the location and sequence of the mature miRNA sequence. ... Literature Analysis. Mouse over the terms for more detail; many indicate links which you can click for dedicated pages about ... Target prediction analysis for miR-1247-5p performed online revealed that MYCBP2 (myc-binding protein 2) was a high-scoring ...
  http://www.cancerindex.org/geneweb/MIR1271.htm
*  CDK5 | Cancer Genetics Web
Oligonucleotide Array Sequence Analysis. *Cell Survival. *Drug Resistance. *Phosphorylation. *RB1. *Chromosome 7 ... We integrated gene mutation, GWAS, CGH, array-CGH and SNP array data in order to identify important genes and loci in genome- ... Using cell cycle analysis and Annexin V/PI straining assay, G1 phase cell cycle arrest was found to be a reason for the ... Literature Analysis. Mouse over the terms for more detail; many indicate links which you can click for dedicated pages about ...
  http://www.cancerindex.org/geneweb/CDK5.htm
*  How the intestinal peptide transporter PEPT-1 contributes to an obesity phenotype in Caenorhabditits elegans.
Oligonucleotide Array Sequence Analysis. Phenotype. Symporters / genetics, physiology*. Chemical. Reg. No./Substance: 0/Fatty ... Fat extraction and gas chromatographical analysis of fatty acids For biochemical analysis, lipids were extracted from 130?170 ... 2004A Model-Based Background Adjustment for Oligonucleotide Expression Arrays.J American Statistical Association99909917. ... elegans whole-genome arrays and the arrays were washed and scanned following the instructions of the provider. ...
  http://www.biomedsearch.com/nih/How-intestinal-peptide-transporter-PEPT/19621081.html
*  COL4A2 | Cancer Genetics Web
Oligonucleotide Array Sequence Analysis. *Genes, Neoplasm. *Angiogenesis. *Transcriptome. *rac1 GTP-Binding Protein ... By gene array analysis we found that such a protective effect correlates with a robust downregulation in the expression of CXC ... Molecular analysis of ING1 promoter warrants further analysis. Related: Chromosome 13 Bladder Cancer Bladder Cancer - Molecular ... candidates with best scores from significance analysis have been selected for further analysis by TaqMan low-density array- ...
  http://www.cancerindex.org/geneweb/COL4A2.htm
*  FSCN1 | Cancer Genetics Web
Oligonucleotide Array Sequence Analysis. *Base Sequence. *Esophageal Cancer. *Bladder Cancer. *Neoplastic Cell Transformation ... We sequenced FAN1 in 176 additional families with histories of colorectal cancer and performed in vitro functional analyses of ... The immunohistochemical analyses also provided evidence of heterogeneity between and within LAM cases. The analysis of Tsc2- ... Flow cytometric analysis revealed that the HA/SNL aggregate-induced apoptosis was more effective at a lower SNL dose of 25 µg/ ...
  http://www.cancerindex.org/geneweb/FSCN1.htm
*  HPGD | Cancer Genetics Web
Oligonucleotide Array Sequence Analysis. *DNA Sequence Analysis. *Colorectal Cancer. *Dinoprostone. *Urothelium. * ... BACKGROUND: Analysis of genome-wide data is often carried out using standard methods such as differential expression analysis, ... were used for Illumina expression array analysis. Findings were confirmed using quantitative real-time PCR (qRT-PCR) in the ... clustering analysis and heatmaps. Beyond that, differential correlation analysis was suggested to identify changes in the ...
  http://www.cancerindex.org/geneweb/HPGD.htm
*  CTSB | Cancer Genetics Web
Oligonucleotide Array Sequence Analysis. *Chromosome Aberrations. *Prostate Cancer. *Transfection. *Neoplasm Invasiveness. * ... AQ displayed potent antiproliferative effects, and gene expression array analysis revealed changes at the mRNA (CDKN1A, E2F1) ... using Illumina CytoSNP12v2.1 arrays, a custom analysis pipeline, and the MEDICC algorithm. We found remarkable diversity of ... we conducted a comprehensive whole-genome analysis of 131 Chinese gastric cancer tissue specimens using whole-genome array ...
  http://www.cancerindex.org/geneweb/CTSB.htm
*  ANXA2 | Cancer Genetics Web
Oligonucleotide Array Sequence Analysis. *Cell Movement. *Adenocarcinoma. *Lung Cancer. *Subtraction Technique. *Messenger RNA ... Bioinformatics analysis, array-based RNA expression profile, and literature retrieval were used to identify miR-9 targets in ... METHODS: MIEN1 was first studied using in-silico analysis on available RNA sequencing data of human breast tissues and its ... Literature Analysis. Mouse over the terms for more detail; many indicate links which you can click for dedicated pages about ...
  http://www.cancerindex.org/geneweb/ANXA2.htm
*  EEF1A1 | Cancer Genetics Web
Base Sequence. *Oligonucleotide Array Sequence Analysis. *Receptor, Fibroblast Growth Factor, Type 3 ... Hierarchical cluster analysis indicated that there were differences in gene level between the two groups. And SVM analysis ... Haplotype analysis in key informative AcB/BcA strains restricts the size of the Ccs3 locus to a 14 Mb segment that contains 94 ... We used RNA sequencing (RNA-Seq) to survey the whole genome expression in 5 lung normal samples and 44 lung squamous-cell ...
  http://www.cancerindex.org/geneweb/EEF1A1.htm
*  Erlotinib Before and After Surgery in Treating Patients With Muscle-Invasive Bladder Cancer
Oligonucleotide Array Sequence Analysis. Hybridization of a nucleic acid sample to a very large set of oligonucleotide probes, ... Included are such techniques as IN SITU HYBRIDIZATION of chromosomes for CYTOGENETIC ANALYSIS; OLIGONUCLEOTIDE ARRAY SEQUENCE ... erlotinib hydrochloride, gene expression analysis, microarray analysis, protein expression analysis, reverse transcriptase- ... The simultaneous analysis, on a microchip, of multiple samples or targets arranged in an array format. ...
  https://www.bioportfolio.com/resources/trial/104714/Erlotinib-Before-and-After-Surgery-in-Treating-Patients-With-Muscle-Invasive-Bladder.html