Analysis of local helix geometry in three B-DNA decamers and eight dodecamers. - Semantic Scholar
Nucleic acids research. *2014. Automatic workflow for the classification of local DNA conformations. *Petr Cech. , Jaromir ... Kinetic Recognition of Nucleic Acids Studies on the DNA Binding Selectivity of Threading Ruthenium Complexes. *pär n0rdell. , ... Balance of Attraction and Repulsion in Nucleic-Acid Base Stacking: CCSD(T)/Complete-Basis-Set-Limit Calculations on Uracil ... A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and ...https://www.semanticscholar.org/paper/Analysis-of-local-helix-geometry-in-three-B-DNA-de-Yanagi-Priv%C3%A9/701831e8dfa9ed234e96c1584371ccef47bd64e2
Difference between revisions of "Wikiomics:RNA secondary structure prediction" - OpenWetWare
A statistical sampling algorithm for RNA secondary structure prediction. Nucleic Acids Res. 2003 Dec 15;31(24):7280-301. PubMed ... Barriers Reads an energy sorted list of conformations of a landscape, and computes local minima and energy barriers of the ... Chiu DK and Kolodziejczak T. Inferring consensus structure from nucleic acid sequences. Comput Appl Biosci. 1991 Jul;7(3):347- ... Knudsen B and Hein J. Pfold: RNA secondary structure prediction using stochastic context-free grammars. Nucleic Acids Res. 2003 ...https://openwetware.org/wiki/?title=Wikiomics:RNA_secondary_structure_prediction&diff=205262&oldid=188243
Secondary structure formation of FRA16B DNA following d | Open-i
Burrow AA, Marullo A, Holder LR, Wang YH - Nucleic Acids Res. (2010) ... Burrow AA, Marullo A, Holder LR, Wang YH - Nucleic Acids Res. (2010) ...https://openi.nlm.nih.gov/detailedresult.php?img=PMC2875025_gkp1245f1&req=4
Natural-occurring Z-conformations in nucleic acids: probed by the Zα domain of human RNA editing enzyme
... ... Here, a protein probe that could specifically bind to Z-conformation was used to map the Z-DNA distribution in the human genome ... Besides the common right-handed B- or A- structures, the alternate Z-conformation, which is left-handed, can be formed in both ... However, formation of Z-conformation in living organisms and its biological significance remains largely elusive. ...https://dr.ntu.edu.sg/handle/10356/47999
Structural Studies on Nucleic acids and Other Biopolymers - 1st Edition
Purchase Structural Studies on Nucleic acids and Other Biopolymers - 1st Edition. Print Book & E-Book. ISBN 9780122229022, ... Conformation of Nucleic Acids, Oligo- and Polynucleotides by Circular Dichroism Investigations. I. Introduction. II. ... Infrared Studies of Nucleic Acid Structure. III. Raman Spectroscopy and Nucleic Acid Structure. References. 11. Infrared and ... Physico-chemical Properties of Nucleic Acids, Volume II basically deals with the structural studies on nucleic acids and other ...https://www.elsevier.com/books/structural-studies-on-nucleic-acids-and-other-biopolymers/duchesne/978-0-12-222902-2
In vivo restriction. Sequence and structure of endonuclease II-dependent cleavage sites in bacteriophage T4 DNA.
Nucleic Acid Conformation. Restriction Mapping. Substrate Specificity. T-Phages / enzymology*, genetics. Chemical. ...http://www.biomedsearch.com/nih/In-vivo-restriction-Sequence-structure/1744134.html
A faster algorithm for simultaneous alignment and folding of RNA.
Nucleic Acid Conformation. RNA / chemistry*. Sequence Alignment / economics, methods*. Chemical. Reg. No./Substance: 63231-63-0 ...http://www.biomedsearch.com/nih/Faster-Algorithm-Simultaneous-Alignment-Folding/20649420.html
A genetically encoded photocaged amino acid.
Nucleic Acid Conformation. Octanoic Acids / metabolism*. Photochemistry. Proteins / genetics. RNA, Transfer, Amino Acyl / ... alpha-aminocaprylic acid, and the photocaged amino acid, o-nitrobenzyl cysteine, allowing them to be inserted into proteins in ... 0/Methyltyrosines; 0/Octanoic Acids; 0/Proteins; 0/RNA, Transfer, Amino Acyl; 3308-72-3/O-methyltyrosine; 52-90-4/Cysteine; 71- ... we have identified a series of synthetase mutants that selectively charge the amber suppresor tRNA with the C8 amino acid, ...http://www.biomedsearch.com/nih/genetically-encoded-photocaged-amino-acid/15521721.html
Site-specific reverse splicing of a HEG-containing group I intron in ribosomal RNA.
Nucleic Acid Conformation. RNA / metabolism. RNA Splicing*. RNA, Catalytic / genetics*, metabolism. RNA, Ribosomal / chemistry ... Journal ID (nlm-ta): Nucleic Acids Res. Journal ID (publisher-id): Nucleic Acids Research. ISSN: 0305-1048. ISSN: 1362-4962. ... Title: Nucleic acids research Volume: 33 ISSN: 1362-4962 ISO Abbreviation: Nucleic Acids Res. Publication Date: 2005 ... Belfort M.,Roberts R.J.. Homing endonucleases: keeping the house in orderNucleic Acids Res. 1997;25:3379-3388. [pmid: 9254693] ...http://www.biomedsearch.com/nih/Site-specific-reverse-splicing-HEG/15817568.html
The Xist RNA A-repeat comprises a novel AUCG tetraloop fold and a platform for multimerization.
Nucleic Acid Conformation. RNA Folding*. RNA, Long Noncoding. RNA, Untranslated / chemistry*, metabolism. Repetitive Sequences ...http://www.biomedsearch.com/nih/Xist-RNA-repeat-comprises-novel/21947263.html
BioJava: an open-source framework for bioinformatics.
Nucleic Acid Conformation. Programming Languages*. Protein Conformation. Sequence Analysis. Grant Support. ID/Acronym/Agency: ... The Protein Data BankNucleic Acids Res.Year: 20002823524210592235. Pocock M. Computational analysis of genomesPhD thesis.Year: ... The 10 most frequently used are: (1) nucleotide and amino acid alphabets, (2) BLAST parser, (3) sequence I/O, (4) dynamic ... Gapped BLAST and PSI-BLAST: a new generation of protein database search programsNucleic Acids Res.Year: 199725338934029254694. ...http://www.biomedsearch.com/nih/BioJava-open-source-framework-bioinformatics/18689808.html
RAP1 stimulates single- to double-strand association of yeast telomeric DNA: implications for telomere-telomere interactions -...
Nucleic Acid Conformation. DOI:. 10.1093/nar/22.24.5310. Laboratories: PTBIOP. Record appears in:. Scientific production and ...https://infoscience.epfl.ch/record/134289
The structure of DNA within cationic lipid/DNA complexes. - Semantic Scholar
... by both FTIR and Raman spectroscopy to occur within the parameters of the B-type conformation. Contributions of absorption ... Determination of the conformation of nucleic acids by electronic CD. *W. C. Johnson ... The optical activity of nucleic acids and their aggregates.. *Ignacio Tinoco, Chona Bustamante, Marcos Maestre ...https://www.semanticscholar.org/paper/The-structure-of-DNA-within-cationic-lipid%2FDNA-Braun-Jas/0014c5dc264d47eaade6d71257da22996b871fba
Synthesis of peptide ribonucleic acid consisting of D- and L-gamma-glutamic acid as a backbone structure.
... which contains 5-amino-5-deoxyribonucleoside as a recognition site for nucleic acids and consists D-glutamic acid (D-PRNA) ... instead of L-glutamic acid (L-PRNA) as a backbone structure, ... A novel nucleic acid model using peptide ribonucleic acid (PRNA ... Glutamic Acid / chemistry*. Hydrogen-Ion Concentration. Nucleic Acid Conformation*. Peptide Nucleic Acids / chemical synthesis ... Title: Nucleic acids symposium series (2004) Volume: - ISSN: 1746-8272 ISO Abbreviation: Nucleic Acids Symp Ser (Oxf) ...http://www.biomedsearch.com/nih/Synthesis-peptide-ribonucleic-acid-consisting/17150461.html
Pif1 exhibited robuststrand annealing activity in the a | Open-i
Nucleic Acid Conformation. *Saccharomyces cerevisiae/genetics/metabolism. *Substrate Specificity. Related in: MedlinePlus ...https://openi.nlm.nih.gov/detailedresult.php?img=PMC4263423_bi-2014-00746v_0002&req=4
Schema of our method. We first calculate correlations b | Open-i
Nucleic Acid Conformation. *Prognosis. *Regulatory Elements, Transcriptional/physiology. *Regulatory Sequences, Nucleic Acid/ ...https://openi.nlm.nih.gov/detailedresult.php?img=PMC2572072_1471-2105-9-404-1&req=4
Portions of the RPS17B, RPS6B and APE2 introns containi | Open-i
Nucleic Acid Conformation. *RNA, Fungal/genetics. *Ribosomal Proteins/genetics. *Saccharomyces cerevisiae Proteins/genetics ...https://openi.nlm.nih.gov/detailedresult.php?img=PMC2536676_1471-2164-9-355-9&req=4
Chemical procedure used to couple the functional groups | Open-i
Guerniou V, Gillet R, Berrée F, Carboni B, Felden B - Nucleic Acids Res. (2007) ... Urocanic acid and benzimidazoleacetic acid functional groups were also coupled at the 5′-end of the DNA oligonucleotide. The ... Urocanic acid and benzimidazoleacetic acid functional groups were also coupled at the 5′-end of the DNA oligonucleotide. The ... Guerniou V, Gillet R, Berrée F, Carboni B, Felden B - Nucleic Acids Res. (2007) ...https://openi.nlm.nih.gov/detailedresult.php?img=PMC2175329_gkm770f2&req=4
Analyses of the nucleotide bias at the first position o | Open-i
Nucleic Acid Conformation. *RNA Interference. *Reproducibility of Results. *Transcriptome. © Copyright Policy Related In: ...https://openi.nlm.nih.gov/detailedresult.php?img=PMC4221132_pone.0111820.g003&req=4
Zinc finger polypeptides capable of binding DNA quadruplexes - Patent # 6492117 - PatentGenius
A G-quartet is therefore any segment of nucleic acid or combination of nucleic acids which is in a four-stranded conformation. ... be transfected with a sufficient amount of the nucleic acid binding protein-encoding nucleic acid to form the nucleic acid ... As used herein, "nucleic acid" refers to both RNA and DNA, constructed from natural nucleic acid bases or synthetic bases, or ... Telomeric nucleic acid refers to nucleic acid comprised in or derived from telomeres of eukaryotic cells. The term therefore ...http://www.patentgenius.com/patent/6492117.html
CHEM C581 ALL Function and Structure of Macromolecules
Biophysical chemistry: structure and conformation of proteins and nucleic acids; thermodynamics and kinetics of biochemical ...http://www.indiana.edu/~deanfac/blfal99/chem/chem_c581_ALL.html
Protein expression results for the APE2 gene containing | Open-i
Nucleic Acid Conformation. *RNA, Fungal/genetics. *Ribosomal Proteins/genetics. *Saccharomyces cerevisiae Proteins/genetics ...https://openi.nlm.nih.gov/detailedresult.php?img=PMC2536676_1471-2164-9-355-8&req=4
Shortest path vs. Sum-of-Pairs. The graph shows the MCC | Open-i
Nucleic Acid Conformation. Related in: MedlinePlus. © Copyright Policy - open-access Related In: Results - Collection ...https://openi.nlm.nih.gov/detailedresult.php?img=PMC2147038_1471-2105-8-366-6&req=4
Cell and Cell Constituent Freeze-Drying: Fundamentals and Principles | SpringerLink
Sundaralingam M, Rao St (eds). Structure and conformation of nucleic acids and protein-nucleic acid interactions. Baltimore, ... Effect of water activity on the viability of freeze-dried bifidobacteria and lactic acid bacteria. In: IIR Commission Cl ...https://link.springer.com/chapter/10.1007/978-1-4613-1515-5_3
Comparison of box C/D snoRNA expression patterns in nor | Open-i
Nucleic Acids Res. (2014) ... Nucleic Acid Conformation. *Ovarian Neoplasms/genetics/ ...https://openi.nlm.nih.gov/detailedresult.php?img=PMC4150776_gku664fig1&req=4