Leicester Research Archive: The chromosomes of Citrus and Poncirus species and hybrids: Identification of characteristic...
The chromosomes of Citrus and Poncirus species and hybrids: Identification of characteristic chromosomes and physical mapping ...https://lra.le.ac.uk/handle/2381/24193
ACEDB Genome Database Software FAQ
1993 Database : ? Species : Homo sapiens Focus : Physical mapping of human chromosomes 22 and X Curator : Ian Dunham Contact : ... Computer staff for the UC Berkeley Drosophila physical mapping project the LBL Human Chromosome 21 project, and the LBL plant ... GMAP genetic map PMAP physical map (Sulston contig style) SEQ DNA sequence - symbolic, features, sequence and translation GRID ... whole chromosome physical map plot GEL agarose gel simulation derived from sequence ...http://www.bio.net/bionet/mm/acedb/1993-November/002783.html
Physical Mapping of the 5S and 18S rDNA in Ten Species of Hypostomus Lacépède 1803 (Siluriformes: Loricariidae): Evolutionary...
The species with and chromosomes (H. albopunctatus, H. aff. paulinus, and H. topavae) showed single chromosome pairs bearing 5S ... Physical Mapping of the 5S and 18S rDNA in Ten Species of Hypostomus Lacépède 1803 (Siluriformes: Loricariidae): Evolutionary ... Most species had 18S rDNA sites in the telomeric region of the chromosomes. All species but H. cochliodon had 5S rDNA in the ... The species with and chromosomes (H. ancistroides, H. commersoni, H. hermanni, H. regani, and H. strigaticeps) had multiple ...https://www.hindawi.com/journals/tswj/2014/943825/
ASMscience | The Adaptive Genetic Ars
... with emphasis on pathogenic Vibrio species and antibiotic resistance. Even though many reports have demonstrated that the ... Physical and genetic map of the genome of Vibrio parahaemolyticus: presence of two chromosomes in Vibrio species. Mol. ... Okada, K.,, T. Iida,, K. Kita-Tsukamoto, and, T. Honda. 2005. Vibrios commonly possess two chromosomes. J. Bacteriol. 187:752- ... Tagomori, K.,, T. Iida, and, T. Honda. 2002. Comparison of genome structures of vibrios, bacteria possessing two chromosomes. J ...http://www.asmscience.org/content/book/10.1128/9781555815714.ch08
A Comprehensive Expressed Sequence Tag Linkage Map for Tiger Salamander and Mexican Axolotl: Enabling Gene Mapping and...
Unlike most vertebrate species, linkage map size in Ambystoma is not strongly correlated with chromosome arm number. Presumably ... Although recombinational map size in Ambystoma may simply be a consequence of a large physical genome size (Table 1), the ... Early tetrad mapping studies located d in the distal region of an unknown chromosome (Lindsley et al. 1955; Armstrong 1984) and ... the haploid number of chromosomes. Furthermore, there is a strong correlation between chromosome arm number and genetic map ...http://www.genetics.org/content/171/3/1161
Development of Capsicum EST-SSR markers for species identification and in silico mapping onto the tomato genome sequence |...
Map positions of the CaES markers on the tomato genome. The tomato chromosomes (T01-T12) are indicated in physical length. ... Development of Capsicum EST-SSR markers for species identification and in silico mapping onto the tomato genome sequence. ... Alternatively, a combination of bin maps, using minimum sets of the marker loci to cover the genome generally, and fine maps, ... have been advanced by using the conserved orthologous set II markers commonly mapped onto the linkage maps of different species ...https://rd.springer.com/article/10.1007/s11032-012-9774-z
Publication : USDA ARS
Characterization of eight species of Aloe (Asphodelaceae) from the nucleolar organizing region
... by chromosome banding and physical mapping of 18S-5.8S-26S and 5S rRNA gene sites. Genetics and Molecular Biology 30: 65-72. [ ... All species showed a uniform 2n=14, with eight large chromosomes and six small chromosomes. Satellites were observed on the ... All species showed a uniform 2n=14 bimodal karyotype, with eight large chromosomes (pairs L1, L2, L3 and L4) and six small ones ... Table 1 Aloe species studied, provenance and karyotypes features. Section, Subsection and Species† MS. Nº. Karyotype formulae ( ...http://www.scielo.br/scielo.php?script=sci_arttext&pid=S2175-78602018000200363&lng=en&nrm=iso&tlng=en
Multiple structural aberrations and physical mapping of rye chromosome 2R introgressed into wheat | Springer for Research &...
... breakage and reunion not only provide new germplasm for enriching genetic diversity but are also helpful for physical mapping ... these stable aberrations and the colinearity of chromosome 2R with corresponding chromosomes in the other model monocot species ... Genetic and physical mapping of homoeologous recombination points involving wheat chromosome 2B and rye chromosome 2R. Genome ... Multiple structural aberrations and physical mapping of rye chromosome 2R introgressed into wheat. ...https://rd.springer.com/article/10.1007/s11032-015-0333-2
Agronomy | Free Full-Text | Development of Genomic Resources in the Species of Trifolium L. and Its Application in Forage...
... genetic and genomic tools and resources have developed rapidly over the last five years including genetic and physical maps, ... BAC (bacterial artificial chromosome) end sequence and transcriptome sequence information. This has paved the way for the use ... The first genetic maps of another species, subterranean clover (Trifolium subterraneum L.) have also been published and its ... For both species the sequencing of the model legume Medicago truncatula gene space is an important development to aid genomic, ...http://www.mdpi.com/2073-4395/2/2/116/htm
Determination of basic chromosome numbers in the genus Saccharum by physical mapping of ribosomal RNA genes
'Hidden' Differences Of Chromosome Organization Become Visible -...
... chromosomes. By localization of such molecular "markers" on chromosomes, or so-called "physical mapping", researchers evidence ... Why different species have dissimilar sets of chromosomes? Why the differentiated species often conserve apparently identical ... Such questions motivate researchers to compare chromosomes in closely related species.. To understand the nature of chromosome ... Original source: Gornung E, Bezerra AMR, Castiglia R (2011) Comparative chromosome mapping of the rRNA genes and telomeric ...http://www.redorbit.com/news/science/2601574/hidden-differences-of-chromosome-organization-become-visible/
An Integrated Physical and Genetic Map of the Rice Genome | Plant Cell
... and syntenic relationship with other cereal species. We have constructed a bacterial artificial chromosome fingerprint-based ... This rice physical map can be used to build comparative physical maps of sorghum, maize, and other cereal species. High- ... our efforts at anchoring the physical map to chromosome 10 of the rice genetic map are in agreement with the chromosome 10 ... Physical Map Accuracy. For rice chromosome 1, 346 BAC or PAC clones have been sequenced and mapped by the RGP and deposited ...http://www.plantcell.org/content/14/3/537.long
Molecular marker - Wikipedia
First, is a physical map, that helps identify the location of where you are on a chromosome as well as which chromosome you are ... They can identify small changes within the mapping population enabling distinction between a mapping species, allowing for ... They identify particular locations on a chromosome, allowing for physical maps to be created. Lastly they can identify how many ... When developing a map it is beneficial to identify several polymorphic distinctions between two species as well as identify ...https://en.wikipedia.org/wiki/Molecular_marker
Mining plant genome browsers as a means for efficient connection of physical, genetic and cytogenetic mapping: an example using...
... maps are important tools to uncover general chromosome structure as well as to compare different plant lineages and species, ... The present work presents a tutorial regarding the use of genome browsers to develop targeted physical mapping, providing also ... BELARMINO, Luis C. et al. Mining plant genome browsers as a means for efficient connection of physical, genetic and cytogenetic ... As a case study, the available genome of soybean was accessed to show how the physical and in silico distribution of such ...http://www.scielo.br/scielo.php?script=sci_abstract&pid=S1415-47572012000200015&lng=en&nrm=iso&tlng=en
Theses and Dissertations
... comparative mapping and linkage map and physical map integration, over 20,000 Bacterial Artificial Chromosome (BAC) end ... Keywords: channel catfish genome, gene mapping, genetics. Abstract: Catfish is the major aquaculture species in the United ... The constructed physical map should provide an important and powerful tool for genomic studies in catfish, including ... sequences were generated and a BAC-based physical map of the channel catfish (Ictalurus punctatus Rafinesque) genome was ...http://www.ag.auburn.edu/fish/theses-and-dissertations/?thesesdiss=3485
Features of the organization of bread wheat chromosome 5BS based on physical mapping | BMC Genomics | Full Text
Our aim is to develop and use the physical map for analysis of the organization of the short arm of wheat chromosome 5B (5BS) ... The resulting physical map covered ~ 99% of the 5BS chromosome arm (111 scaffolds, N50 = 3.078 Mb). SSR, ISBP and zipper ... A physical map of the 5BS arm (290 Mbp) was constructed using restriction fingerprinting and LTC software for contig assembly ... us to significantly increase the BAC scaffold length when compared with the published physical maps for other wheat chromosomes ...https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-018-4470-y
A Fluorescence in Situ Hybridization System for Karyotyping Soybean | Genetics
These maps allow the association of CLGs, MLGs, and a sequence-based physical map with each of the physical chromosomes. The ... Karyotype maps have been developed for a number of major crop species, including wheat, rice, maize, barley, and tomato. ... specific chromosomes must then be cross-referenced with the genetic and physical maps. The whole-genome physical maps ( ... 2008). The dense soybean genetic map (Song et al. 2004; Choi et al. 2007), as well as the physical map, were significant aids ...http://www.genetics.org/content/185/3/727
JoVE | Peer Reviewed Scientific Video Journal - Methods and Protocols
... chemical and physical research. Watch our scientific video articles. ... High-throughput Physical Mapping of Chromosomes using Automated in situ Hybridization. Authors: Phillip George, Maria V. ... Developing high-resolution physical maps for species with newly sequenced genomes is a timely and cost-effective investment ... gambiae as an example, we demonstrate that the development of physical chromosome maps can potentially improve genome ...https://www.jove.com/visualize/abstract/22514716/characterization-common-carp-transcriptome-sequencing-de-novo
JoVE | Peer Reviewed Scientific Video Journal - Methods and Protocols
... chemical and physical research. Watch our scientific video articles. ... gambiae chromosomes. In addition to physical mapping, the developed technique can be applied to population cytogenetics and ... Developing high-resolution physical maps for species with newly sequenced genomes is a timely and cost-effective investment ... High-throughput Physical Mapping of Chromosomes using Automated in situ Hybridization. Authors: Phillip George, Maria V. ...https://www.jove.com/visualize/abstract/24023741/insights-into-loblolly-pine-genome-characterization-bac-fosmid
Human Genome Project | Encyclopedia.com
The physical maps of chromosomes 16 and 19 were announced in 1995, followed by the publication of moderate-resolution maps of ... chromosomes 3, 11, 12 and 22. During this time, the HGP was not the only species that was being sequenced. Already, the genome ... The physical maps of chromosomes 16 and 19 were announced in 1995, followed by the publication of moderate-resolution maps of ... Two types of maps. In light of the project's main goal-to map the location of all the genes on every chromosome and to ...https://www.encyclopedia.com/science-and-technology/biology-and-genetics/genetics-and-genetic-engineering/human-genome-project
Chromosome landing - Wikipedia
As a result, the mapping paradigm has now changed such that one first isolates one or more DNA marker(s) at a physical distance ... by which map-based cloning is applied to isolate both major genes and genes underlying quantitative traits in plant species. ... without any need for chromosome walking and its associated problems. Chromosome landing, together with the technology that has ... From the abstract of PMID 7716809: The strategy of chromosome walking is based on the assumption that it is difficult and time ...https://en.wikipedia.org/wiki/Chromosome_landing
Toward Integration of Comparative Genetic, Physical, Diversity, and Cytomolecular Maps for Grasses and Grains, Using the...
... consistent with their likely interspecific origin from species that contain chromosomes that can pair and recombine (compare ... F, The linkage map and physical map of the chromosome are superimposed directly onto the structure of the SC to produce a " ... Physical Mapping. A robust physical map, comprised of large-insert DNA clones and anchored to the recombination-based genetic ... In species such as sorghum where physical maps are being constructed, cytomolecular mapping presumably can be used to position ...http://www.plantphysiol.org/content/125/3/1325
PPT - CHAPTER 12 DNA Technology and the Human Genome PowerPoint Presentation - ID:83107
The 23 chromosomes in the haploid human genome contain about 3 billion nucleotide pairs Slideshow 83107 by Anita ... genetic and physical mapping of chromosomes. *DNA sequencing. *comparison of human genes with those of other species ... The 23 chromosomes in the haploid human genome contain about 3 billion nucleotide pairs ... The 23 chromosomes in the haploid human genome contain about 3 billion nucleotide pairs ...https://www.slideserve.com/Anita/biology-concepts-connections-fourth-edition
Genome analysis of a major urban malaria vector mosquito, Anopheles stephensi | Genome Biology | Full Text
Physical mapping assigned 62% of the genome onto chromosomes, enabling chromosome-based analysis. Comparisons between An. ... Chromosome-based investigations provide unique perspectives on Anopheles chromosome evolution. RNA-seq analysis and studies of ... gambiae reveal that the rate of gene order reshuffling on the X chromosome was three times higher than that on the autosomes. ... We also identify a number of Y-chromosome contigs and BACs. Interspersed repeats constitute 7.1% of the assembled genome while ...https://genomebiology.biomedcentral.com/articles/10.1186/s13059-014-0459-2