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*  CombAlign: a code for generating a one-to-many sequence alignment from a set of pairwise structure-based sequence alignments |...
... to reflect amino-acid deletions or structural divergence in the reference relative to one or more compared structures. ... 3, box). This region is perfectly aligned at the sequence level, yet displays poor structural homology when examined using ... Because the Reston strain shares so much sequence identity (74 %-80 %) to its highly pathogenic sisters (i.e., Bundibugyo, ... or sequence-based sequence alignment (MSSA) given a set of pairwise sequence alignments (which may be structure based). ...
  https://scfbm.biomedcentral.com/articles/10.1186/s13029-015-0039-1
*  Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega | Molecular Systems Biology
... external profile can help provide information as to which amino acids are most likely to occur at each position in a sequence. ... Here, the results are divided into five groups according to the percent identity of the sequences. The overall scores range ... Söding J (2005) Protein homology detection by HMM-HMM comparison. Bioinformatics 21: 951-960. ... Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797. ...
  http://msb.embopress.org/content/7/1/539
*  Frontiers | Molecular Recognition of Paired Receptors in the Immune System | Microbiology
On the other hand, mouse DCIR shares substantial sequence homology (91% aminoacid identity) in the extracellular region with ... Hydrophobic amino acid residues, such as Phe and Leu, are conserved in P8 of the leader sequence, and their replacement with ... They share significantly conserved amino acid sequences within the extracellular domains, but have both activating and ... The similarity of their amino acid sequences with that encoded by KIR suggests that the LILRs and KIRs are related by a recent ...
  https://www.frontiersin.org/articles/10.3389/fmicb.2012.00429/full
*  Eukaryotic translation elongation factor 1 alpha 1 - Wikipedia
... with high amino acid sequence homology (approximately 90% identity). The sequences of their promoter regions are also highly ... Rao TR, Slobin LI (Mar 1986). "Structure of the amino-terminal end of mammalian elongation factor Tu". Nucleic Acids Research. ... Addition of ethanolamine-phosphoglycerol to specific glutamic acid residues on EF-1 alpha". The Journal of Biological Chemistry ... Nucleic Acids Research. 18 (6): 1513-6. doi:10.1093/nar/18.6.1513. PMC 330519 . PMID 2183196. Bec G, Kerjan P, Zha XD, Waller ...
  https://en.wikipedia.org/wiki/Eukaryotic_translation_elongation_factor_1_alpha_1
*  Interferon alpha-1 - Wikipedia
... amino acid sequence homology, and about 35% identity with IFNB. The high degree of amino-acid sequence similarity within the ... All of these IFN-α proteins exhibit high homology in their primary, secondary, and tertiary structures. IFNA and IFNB are ... Viruses and immune complexes (ICs) containing nucleic acids can access intracellular TLRs (TLR3, TLR7/8 and TLR9) after binding ... Shrivastav M, Niewold TB (2013). "Nucleic Acid sensors and type I interferon production in systemic lupus erythematosus". ...
  https://en.wikipedia.org/wiki/Interferon_alpha-1
*  Publication : USDA ARS
The deduced amino acid sequence shows homology ranging from 79.7% identity with rat EPOR to 89.9% identity with bovine EPOR. ... which was cloned an sequenced, giving a total sequence of 1450 bp, corresponding to amino acids 80-508 of the human EPOR plus ... The results indicate a high homology with other known EPOR sequences, and show increased expression of pEPOR mRNA in porcine ... with primers generated using an EPOR consensus sequence, a partial cDNA of 532 bp (corresponding to a portion of the ...
  https://www.ars.usda.gov/research/publications/publication/?seqNo115=89424
*  Plus it
This was somewhat unexpected, because WRKY17 shows extensive sequence homology with WRKY11 (72% amino acid identity), making it ... part of the coding sequence, resulting in a premature stop codon at position 121 in the predicted amino acid sequence of WRKY11 ... This 60-amino acid domain comprises the name-giving, absolutely conserved sequence motif WRKYGQK and a zinc-finger motif. Both ... of the WRKY IId subfamily was generated using the neighbor-joining method after alignment of the entire amino acid sequences of ...
  http://www.plantcell.org/content/18/11/3289
*  Plus it
... despite a weaker sequence homology (57% amino acid identity with human P2X4), is effectively blocked by BX430 (Fig. 8, B and C ... 7). BX430 did not have any significant effect on the rat P2X4 either (87 and 94% amino acid identity with human and mouse P2X4 ... Unexpectedly, mouse P2X4 (87% amino acid identity with human P2X4) in transiently transfected HEK293 cells did not show any ... The primary sequence of P2X4 subunits is significantly conserved between vertebrates, from fish to primates; therefore, we ...
  http://molpharm.aspetjournals.org/content/87/4/606
*  Evolution-Guided Structural and Functional Analyses of the HERC Family Reveal an Ancient Marine Origin and Determinants of...
2A). Most HERC orthologs have high sequence homology, ranging from ∼70 to 100% amino acid identity, whereas most HERC paralogs ... Typically, the primary amino acid sequences of RCC1-like domains have low sequence homology in the RCC1 superfamily; however, ... The first 30 amino acids were omitted from HERC3 and HERC4 and the first 23 amino acids from HERC5 and HERC6. The accession ... despite limited sequence homology. By allowing numerous amino acid substitutions while maintaining the overall protein ...
  https://jvi.asm.org/content/92/13/e00528-18
*  US7722895B1 - Osteogenic implants with combined implant materials, and materials and methods for same - Google Patents
"Amino acid sequence homology" is understood herein to include both amino acid sequence identity and similarity. Homologous ... conventionally expressed as a level of amino acid sequence homology or identity, between the candidate and reference sequences ... having amino acid sequences each comprising a sequence that shares a defined relationship with an amino acid sequence of a ... amino acid identity with the preferred reference sequence of human BMP-2, still more preferably at least 80% amino acid ...
  https://patents.google.com/patent/US7722895?oq=7%2C194%2C691
*  Renal cell carcinoma development in the rat independent of alterations at the VHL gene locus. | Scholars@Duke
The sequence homology was 90% and the amino-acid identity 99% between the rat and human genes. A developmental and tumor- ... Alterations in the VHL gene were not detected by SSCP, and these data were confirmed by direct sequencing. Transformed rat ... By using reverse transcriptase (RT)-polymerase chain reaction (PCR) analysis, the sequence of the rat VHL gene was determined ... and direct sequencing were used to search for alterations in this gene in the ERC cell lines. ...
  https://scholars.duke.edu/display/pub1143572
*  Emodepside - Wikipedia
... amino acid identity with each other (the amino acid sequence homology LAT-1 shares with rat, bovine and human latrophilins has ... LAT-1 (1014 amino acids, 113 KDa coded by the B0457.1 gene) and LAT-2 (1338 amino acids, 147 KDa coded by the B0286.2 gene) are ... Emodepside is synthesised by attaching a morpholine ring "at the paraposition of each of the two D-phenyllactic acids" to ...
  https://en.wikipedia.org/wiki/Emodepside
*  Sequence and tissue distribution of a second protein of hepatic gap junctions, Cx26, as deduced from its cDNA. | JCB
Overall sequence homology with Cx32 and Cx43 (64 and 51% amino acid identities, respectively) and a similar predicted tertiary ... Sequence and tissue distribution of a second protein of hepatic gap junctions, Cx26, as deduced from its cDNA.. J T Zhang, B J ... Sequence and tissue distribution of a second protein of hepatic gap junctions, Cx26, as deduced from its cDNA. ... 105:2621-2629) the most marked divergence between Cx26 and other members of the family lies in the sequence of the cytoplasmic ...
  http://jcb.rupress.org/content/109/6/3391
*  CASS4 - Wikipedia
Amino acid sequence homology of this isoform of human CASS4 with other family members is 26% overall identity and 42% ... but lacks obvious similarity at the level of primary amino acid sequence. It also lacks a YDYVHL sequence at the N-terminal end ... 786 amino acids, considered the major isoform), the third one contains 6 exons and encodes a shorter isoform b (732 amino acids ... Isoform "a" of human CASS4 is considered the predominant species, and at 786 amino acids is the longest one. ...
  https://en.wikipedia.org/wiki/CASS4
*  5-HT2C receptor agonist - Wikipedia
5-HT2C and 5-HT2A receptors have a similar amino acid sequence homology, with ~50% overall sequence identity and ~80% within ... This process of RNA editing generates 14 unique receptor isoforms of the 5-HT2C receptor that differ in three amino acids in ...
  https://en.wikipedia.org/wiki/5-HT2C_receptor_agonist
*  Insulin-like Growth Factors (IGF) | Sigma-Aldrich
IGF-I and -II share 70% homology in amino acid sequence, while IGF-I and proinsulin share 48% homology. Both IGFs are highly ... conserved between species, with 100% identity among human, bovine and porcine IGFs. Unlike insulin, IGF-I and -II are primarily ... IGF-I and -II are single polypeptide chains of approximately 7.5 kDa comprised of 70 and 67 amino acid residues, respectively. ...
  https://www.sigmaaldrich.com/technical-documents/articles/biofiles/insulin-like-growth.html
*  Multiple endocrine neoplasia - Wikipedia
... identity and 98.4% similarity. Analysis of menin amino acid sequence did not reveal homologies to any other known human or ... Human and mouse MEN1 amino acid sequences share 95.8% ... Menin is a 610 amino acid (67Kda) nuclear protein, highly ... The MEN1 gene consists of ten exons, spanning about 10 kb, and encodes a 610 amino acid protein named menin. The first exon and ... mammalian protein, sequence motif, or signal peptide. The absence of significant homology to any other protein complicates ...
  https://en.wikipedia.org/wiki/Multiple_endocrine_neoplasia
*  PPT - Figure S1 PowerPoint Presentation - ID:118047
... melanogaster Rux amino acid sequence (335 amino acids, bottom). Red bars indicate homology regions detected using BLASTP with ... Table shows amino acid identities (%) for the complete sequence, the non C-terminal domain and the C-terminal domain of Rux. ... dashed bars indicate annotated amino acid sequences with no detectable homology with D. melanogaster Rux. ... na indicates non-detectable homology with D. melanogaster Rux. Equivalent results are obtained using TBLASTN. ...
  https://www.slideserve.com/Melvin/figure-s1
*  Variant surface glycoprotein - Wikipedia
VSGs are made up of N terminal domain of around 300-350 amino acids with low sequence homology (13-30% identity), and a more ... C-term domains are grouped by sequence homology into classes I-III, with apparently no restriction on which N-term classes they ... 100 amino acids . N-terminal domains are grouped into classes A-C depending on their cysteine patterns. ... usually in 17 aa signal sequence peptides), Asp (usually in 23 aa signal sequence peptides), or Asn. Also, the number of N- ...
  https://en.wikipedia.org/wiki/Variant_surface_glycoprotein
*  US5939292A - Thermostable DNA polymerases having reduced discrimination against ribo-NTPs - Google Patents
... encoding the modified enzymes and methods for their production and use offer cost and efficiency advantages for DNA sequencing ... Such enzymes are particularly useful for use in nucleic acid sequencing protocols and provide novel means for DNA sequence ... overall homology (sequence identity) in comparison to the amino acid sequence of the native Taq polymerase. The full-length ... is any amino acid residue but not a glutamic acid residue. In the three letter code for amino acids this amino acid sequence is ...
  https://patents.google.com/patent/US5939292?oq=6%2C757%2C710
*  CMG-2/ANTXR2 Antibody [Unconjugated] (AF2940): Novus Biologicals
... amino acid sequence homology with mouse, rat, bovine, and canine CMG-2, respectively. CMG-2 VWA domain also shares 60% aa ... identity with ATR/TEM8.. *Scobie, H.M. and J.A.T. Young (2005) Curr. Opin. Microbiol. 8:106. ... protein that contains a 33 amino acid (aa) signal sequence, a 284 aa extracellular domain (ECD), a 24 aa TM segment, and a 147 ...
  https://www.novusbio.com/products/cmg-2-antxr2-antibody_af2940
*  JCI - Two rheumatoid arthritis-specific autoantigens correlate microbial immunity with autoimmune responses in joints
... and the remaining 2 amino acids had conserved properties (Figure 7A).. Figure 7. Sequence homology between self- and microbial ... These included amino acids with shared identity in the P1 through P4 and P6 sites. A similar evaluation of the FLNA peptide ... The line through the amino acid residues indicates that the peptide-binding register contains an amino acid with an R-group ... The Butyricimonas peptide shared identity with 6 of 9 amino acids in one of the predicted HLA-DR registers (P1 = F) of the FLNA ...
  https://jci.org/articles/view/93450
*  KAKEN - Research Projects | Cloning and expression of genes responsible for secondary metabolism in medicinal plants. (KAKENHI...
Sequence homology was also observed with other metabolic enzymes of amino acids in bacteria and yeast, and rat hemoprotein H- ... Sequence comparison of deduced amino acids showed 53% identity with CSases of Escherichia coli and Salmonella typhimurium. ... Nucleotide sequence analysis of two independent cDNA clones revealed a continuous open reading frame encoding a polypeptide of ... 325 amino acids with a calculated molecular mass of 34, 185 Da. ... Internal peptide sequences were obtained from V8 protease- ...
  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-02807199/
*  Toxins | Free Full-Text | Serine Protease Autotransporters of Enterobacteriaceae (SPATEs): Biogenesis and Function | HTML
... with an amino-acid sequence identity ranging between 37.5% and 96% in the SPATE family. An increase in identity in the N- ... their sequences show only weak homology. However, AT subfamilies can be identified based upon increased amino-acid sequence ... 4) All SPATE proteins have unusually long (,49 amino-acids) signal sequences. This type of signal sequence is found in ~10% of ... These two amino-acids are, like the serine present in the GDSGS motif, conserved among SPATEs, despite low sequence identity in ...
  http://www.mdpi.com/2072-6651/2/6/1179/htm
*  MONOCLONAL ANTIBODIES AGAINST DENGUE AND OTHER VIRUSES WITH DELETION IN FC REGION - Patent application
... homology therewith. [0045]The term "homology" is defined as the percentage of residues in the amino acid sequence variant that ... acid sequence homology or identity to the Fc region of a parent polypeptide, for example: 35%, 36%, 37%, 38%, 39%, 40%, 41%, 42 ... 0050]An "amino acid modification" refers to a change in the amino acid sequence of a predetermined amino acid sequence. ... acid sequence encoding such amino acid sequence variant can be generated synthetically. [0088]The amino acid sequence of the ...
  http://www.patentsencyclopedia.com/app/20100247549