*  Haplotype - SNPedia
Haplotype: A specific combination of SNPs all occuring together on the same chromosome (i.e. all occuring on the chromosome ... Haplotypes are important for example because many of the SNP's found by genome-wide association studies aren't the true cause ... Because haplotypes are highly likely to be preserved in populations, there are several algorithms for attempting to conduct ... Next Gen Sequencing can thus provide not only perfectly phased genome, but also a haplotype map which can be used to impute ...
  https://snpedia.com/index.php/Haplotype
*  MtDNA diversity and species phylogeny of western Palaearctic members of the Gerris lacustris group (Hemiptera-Heteroptera:...
... six haplotypes represented G. maculatus, four haplotypes represented G. brasili, and a single haplotype was shared between G. ... G. lacustris showed little genetic substructure except for some isolated haplotypes in Italy, Turkey and Armenia, but these are ... geographically overlapping with more widespread haplotypes, and probably represent more ancient diversities in these regions. ... Nine haplotypes represented G. lacustris, nine haplotypes represented G. gibbifer, ...
  http://booksandjournals.brillonline.com/content/journals/10.1163/187631208788784156
*  PIPELINES - Edico Genome
The result is a haplotype variant calling pipeline that is able to analyze a 30x coverage whole human genome in 18 minutes. ... The GATK Pipeline is an implementation of GATK Haplotype Variant Caller from the Broad Institute on the DRAGEN Platform. The ...
  http://edicogenome.com/pipelines/?s=
*  KurdishDNA
2. Because this time I used more SNPs most of the haplotypes split into several haplotypes:. ht1=, ht17-30 (blue). ht2=, ht31 ( ... Find below the phylogenetic tree of MCM6 haplotypes.. Coehlo et al., 2005 predicted that 22018A mutation occured prior to the ... Find below the frequency of the six MCM6 haplotypes in the Kurdish gene pool:. ht1. ht2. ht3. ht4. ht5. ht6. ... In contrast, the compound Arab allele shows a different, highly divergent ancestral haplotype, suggesting that these two major ...
  http://kurdishdna.blogspot.de
*  CRAN Task View: Statistical Genetics
Linkage Disequilibrium and haplotype mapping : A number of packages provide haplotype estimation for unrelated individuals with ... estimates haplotype frequencies from genotype data, and gcontrol(). implements a Bayesian genomic control statistics for ... Population Genetics : genetics implements classes and methods for representing genotype and haplotype data, and has several ... haplo.stats also contains tests for haplotype associations under a GLM framework, but also provides score tests of association ...
  https://cran.stat.unipd.it/web/views/Genetics.html
*  Plus it
Expectation-maximization (EM) algorithm in SAS 9.1 PROC HAPLOTYPE was used to infer haplotype frequencies based on observed ... a minimal set of haplotypes that ensures an Rh2 of at least 0.8 to cover all possible haplotypes that had a frequency of at ... For further haplotype analysis, therefore, we used all genotyped SNPs as a single haplotype block to select tagSNPs using the ... the distributions of the haplotypes between the cases and controls were not significantly different, and the haplotypes had no ...
  http://clincancerres.aacrjournals.org/content/14/11/3633
*  IL-7 Receptor Polymorphisms and Immune Recovery With HAART - Full Text View - ClinicalTrials.gov
AIM: To examine the association between the four haplotypes of IL-7Rα gene and a cohort of HIV infected patients who have ... METHODS: IL-7Rα gene SNPs and haplotypes will be measured by constructing DNA pools, and PCR amplification and DNA sequencing. ...
  https://clinicaltrials.gov/show/NCT00168207?order=516
*  HaploPOP : a software that improves population assignment by combining markers into haplotypes
HaploPOP: a software that improves population assignment by combining markers into haplotypes. Duforet-Frebourg, Nicolas ... Conclusions: Our results show that constructing haplotypes with HaploPOP can substantially reduce assignment error. The ... Because complete exploration of all possible solutions for constructing haplotypes is computationally prohibitive, our approach ... that combines markers into haplotypes, without requiring independence. The algorithm is based on the Gain of Informativeness ...
  http://www.diva-portal.org/smash/record.jsf?pid=diva2:848853
*  How do we interpret a rooted haplotype network?
2000; van Oven and Kayser 2009). Groups and subgroups of this tree have been labelled as haplotypes, such as haplotype group M ... and it is their use as haplotype networks that I wish to discuss here.. Haplotype networks represent the relationships among ... How, then, do we interpret the rooted haplotype network?. An example. Let's look at a specific example, taken from the recent ... These two methods are popular in population genetics, especially as related to Homo sapiens, where they are used as haplotype ...
  http://phylonetworks.blogspot.pt/2013/09/how-do-we-interpret-rooted-haplotype.html
*  rs1050152 - SNPedia
Referring to the TC risk haplotype, the population risk attributable to heterozygotes was 19%, and for homozygous haplotype ... A nearby SNP (rs2631367) in the promoter region of the SLC22A5 gene defines a haplotype along with rs3792876, with odds ratio ... PMID 21695374] Haplotype in the IBD5 region is associated with refractory Crohn's disease in Slovenian patients and modulates ... reported as similar for either SNP or the haplotype. ...
  https://www.snpedia.com/index.php/rs1050152
*  A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. IV. Nested...
We previously developed an analytical strategy based on cladistic theory to identify subsets of haplotypes that are associated ... A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. IV. Nested ... A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. IV. Nested ... A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. IV. Nested ...
  http://www.genetics.org/content/134/2/659
*  MDR1/ABCB1 gene polymorphisms in patients with chronic myeloid leukemia
Wt-haplotype (CC-GG-CC) was observed in 6 CML-patients (25%). In this wt-group, two were treated with nilotinib and reached a ... 1 and 2). In this regard, our study demonstrated that the full wt-haplotype CC-GG-CC (6/24 cases) was only present in patients ... Seventeen different haplotypes were identified: 7 only in controls, 6 only in CML-patients, and the remaining 4 in both groups ... Wt-haplotypes are indicated in each case. The remaining patients were T-variants. In three cases, therapeutic responses were ...
  http://www.bloodresearch.or.kr/journal/view.html?uid=1794&vmd=Full
*  KurdishDNA: 2017
2. Because this time I used more SNPs most of the haplotypes split into several haplotypes:. ht1=, ht17-30 (blue). ht2=, ht31 ( ... 3. I wanted to sort the haplotypes based on the phylogenetic tree.. I also checked the data of Denisova and Neanderthals for ... SNPs of 76 haplotypes including the Denisova and Neanderthal SNPs (predicted ones in grey) and frequencies of all 76 ... Please note that there are many more haplotypes (especially in Africa); I just focused on most common ones as stated above. ...
  http://kurdishdna.blogspot.be/2017/
*  MHC Haplotype Project
... The MHC Haplotype Project was conducted between 2000 and 2006 at the Sanger ... MHC Haplotype Project Data. The data from the MHC Haplotype Project are available in .txt file format file for viewing in the ... Haplotype HLA-A HLA-B HLA-C HLA-DRB1 HLA-DQB1 HLA-DPB1 Links:. Vega UCSC. GRC ... The data are colour-coded by haplotype and will initially be displayed showing 1Mb in the centre of the MHC. You are then free ...
  http://www.ucl.ac.uk/cancer/research/department-cancer-biology/medical-genomics-group/past-projects/mhc-haplotype-project
*  Haplotype - Wikipedia
is the (relative) haplotype frequency of each haplotype in the sample and N. {\displaystyle N}. is the sample size. Haplotype ... Haplotype diversity is a measure of the uniqueness of a particular haplotype in a given population. The haplotype diversity (H ... Given the genotypes for a number of individuals, the haplotypes can be inferred by haplotype resolution or haplotype phasing ... HelixTree - Haplotype analysis software - Haplotype Trend Regression (HTR), haplotypic association tests, and haplotype ...
  https://en.m.wikipedia.org/wiki/Haplotype
*  COX-2 gene promoter haplotypes and prostate cancer risk. - PubMed - NCBI
Haplotype GGCC conferred increased risk in the African American and Nigerian populations. Conversely, haplotype AGGG exhibited ... COX-2 gene promoter haplotypes and prostate cancer risk.. Panguluri RC1, Long LO, Chen W, Wang S, Coulibaly A, Ukoli F, Jackson ... Haplotype analyses revealed modest effects on susceptibility to prostate cancer across populations. ...
  https://www.ncbi.nlm.nih.gov/pubmed/14754878
*  Blocks of Limited Haplotype Diversity
... and with low haplotype diversity, separated from other blocks by steps of low LD with high haplotype diversity ... A haplotype block is a DNA sequence containing polymorphisms in strong linkage disequilibrium (LD) ... and with low haplotype diversity, separated from other blocks by steps of low LD with high haplotype diversity. Haplotype ... Haplotype diversity measured by the effective number of haplotypes is said to be low if smaller than the number of ...
  http://www.els.net/WileyCDA/ElsArticle/refId-a0006251.html
*  Genaissance, AstraZeneca Align To Apply Haplotypes To Disease | BioWorld
BioWorld Online is the news service of record for the biotechnology industry and is updated every business morning. BioWorld Online will keep you up to date on all of the industry's business, science and regulatory news -- mergers and collaborations, FDA hearings and results, breakthroughs in research and much more.
  http://www.bioworld.com/content/genaissance-astrazeneca-align-apply-haplotypes-disease
*  Haplotype Map of Sickle Cell Anemia in Tunisia
... Imen Moumni,1 Maha Ben Mustapha,1 Sarra Sassi,1 Amine Zorai,1 Ikbel Ben Mansour ... Imen Moumni, Maha Ben Mustapha, Sarra Sassi, et al., "Haplotype Map of Sickle Cell Anemia in Tunisia," Disease Markers, vol. ...
  https://www.hindawi.com/journals/dm/2014/938301/cta/
*  A Note on Efficient Computation of Haplotypes via Perfect Phylogeny | UMIACS
A Note on Efficient Computation of Haplotypes via Perfect Phylogeny. Title. A Note on Efficient Computation of Haplotypes via ... A Haplotype Map project has been announced by NIH to identify and characterize populations in terms of these haplotypes. ... For the second problem of computing a PPH solution that minimizes the number of distinct haplotypes, we show that the problem ... The problem of inferring haplotype phase from a population of genotypes has received a lot of attention recently. This is ...
  https://www.umiacs.umd.edu/publications/note-efficient-computation-haplotypes-perfect-phylogeny
*  Patent US20060008799 - Rapid haplotyping by single molecule detection - Google Patents
The present invention includes a method for rapid haplotyping a DNA or RNA segment. Two or more target sites on a segment of ... presence or absence of each luminescent hybridization probe on each DNA or RNA segment is detected to determine the haplotype ... a) Targets of haplotyping are all sorts of DNA and RNA variations that are necessary to define a haplotype. They include any ... The haplotype deduced from a genotype is typically done in bulk as follows (inferred haplotypes). The region of interest is PCR ...
  http://www.google.com/patents/US20060008799
*  The Evolution and Diversification of S-Locus Haplotypes in the Brassicaceae Family | Genetics
... sativus haplotypes were found only among the class Ia haplotypes. While all A. lyrata SRK haplotypes were well separated from ... Also, the presence of a 9-bp deletion in exon 7 of all SRK class II haplotypes and in only one of the class I haplotypes ( ... For SCR, only class II haplotypes could be amplified, and six class II haplotypes were used in this study. DNA sequences from ... 1999b), clustered with A. lyrata haplotypes but separately from the Brassica haplotypes. From this observation, Paetsch et al. ...
  http://www.genetics.org/content/181/3/977
*  β-globin gene cluster haplotypes in sickle cell patients from Panamá.
To analyze the frequency of the haplotypes of β-globin gene cluster in randomly selected patients with sickle cell disease (SCD ... Haplotypes*. Hemoglobin, Sickle / genetics*. Hospitalization. Humans. Infant. Male. Multigene Family. Panama. Polymerase Chain ... RESULTS: The Bantu haplotype was predominant with a frequency of 51%, followed by the Benin (30%), Senegal (8.5%), and Cameroon ... OBJECTIVE: To analyze the frequency of the haplotypes of β-globin gene cluster in randomly selected patients with sickle cell ...
  http://www.biomedsearch.com/nih/globin-gene-cluster-haplotypes-in/21387457.html