*  Haplotype - SNPedia
Haplotype: A specific combination of SNPs all occuring together on the same chromosome (i.e. all occuring on the chromosome ... Haplotypes are important for example because many of the SNP's found by genome-wide association studies aren't the true cause ... Because haplotypes are highly likely to be preserved in populations, there are several algorithms for attempting to conduct ... Next Gen Sequencing can thus provide not only perfectly phased genome, but also a haplotype map which can be used to impute ...
  https://snpedia.com/index.php/Haplotype
*  PIPELINES - Edico Genome
The result is a haplotype variant calling pipeline that is able to analyze a 30x coverage whole human genome in 18 minutes. ... The GATK Pipeline is an implementation of GATK Haplotype Variant Caller from the Broad Institute on the DRAGEN Platform. The ...
  http://edicogenome.com/pipelines/?s=
*  KurdishDNA
2. Because this time I used more SNPs most of the haplotypes split into several haplotypes:. ht1=, ht17-30 (blue). ht2=, ht31 ( ... Find below the phylogenetic tree of MCM6 haplotypes.. Coehlo et al., 2005 predicted that 22018A mutation occured prior to the ... Find below the frequency of the six MCM6 haplotypes in the Kurdish gene pool:. ht1. ht2. ht3. ht4. ht5. ht6. ... In contrast, the compound Arab allele shows a different, highly divergent ancestral haplotype, suggesting that these two major ...
  http://kurdishdna.blogspot.de
*  Brevet US7615350 - Methods for haplotyping genomic DNA - Google Brevets
The excess genomic DNA is washed away and the haplotype separated genomic DNA is denatured from the oligonucleotide probe and ... Separation of the haplotypes of large genomic DNA fragments allows for linkage analysis of other HLA alleles and polymorphisms ... oligonucleotides designed to specifically hybridize with each of the two HLA-B haplotypes, HLA-A, HLA-C, HLA-DR, HLA-DQ, and ... isolating and separating large segments of genomic DNA that can subsequently be used to determine a genomic haplotype. The ...
  http://www.google.fr/patents/US7615350
*  HaploPOP : a software that improves population assignment by combining markers into haplotypes
HaploPOP: a software that improves population assignment by combining markers into haplotypes. Duforet-Frebourg, Nicolas ... Conclusions: Our results show that constructing haplotypes with HaploPOP can substantially reduce assignment error. The ... Because complete exploration of all possible solutions for constructing haplotypes is computationally prohibitive, our approach ... that combines markers into haplotypes, without requiring independence. The algorithm is based on the Gain of Informativeness ...
  http://www.diva-portal.org/smash/record.jsf?pid=diva2:848853
*  KurdishDNA: May 2017
2. Because this time I used more SNPs most of the haplotypes split into several haplotypes:. ht1=, ht17-30 (blue). ht2=, ht31 ( ... 3. I wanted to sort the haplotypes based on the phylogenetic tree.. I also checked the data of Denisova and Neanderthals for ... SNPs of 76 haplotypes including the Denisova and Neanderthal SNPs (predicted ones in grey) and frequencies of all 76 ... Please note that there are many more haplotypes (especially in Africa); I just focused on most common ones as stated above. ...
  http://kurdishdna.blogspot.be/2017/05/
*  How do we interpret a rooted haplotype network?
2000; van Oven and Kayser 2009). Groups and subgroups of this tree have been labelled as haplotypes, such as haplotype group M ... and it is their use as haplotype networks that I wish to discuss here.. Haplotype networks represent the relationships among ... How, then, do we interpret the rooted haplotype network?. An example. Let's look at a specific example, taken from the recent ... These two methods are popular in population genetics, especially as related to Homo sapiens, where they are used as haplotype ...
  http://phylonetworks.blogspot.pt/2013/09/how-do-we-interpret-rooted-haplotype.html
*  CRAN Task View: Statistical Genetics
Linkage Disequilibrium and haplotype mapping : A number of packages provide haplotype estimation for unrelated individuals with ... estimates haplotype frequencies from genotype data, and gcontrol(). implements a Bayesian genomic control statistics for ... Population Genetics : genetics implements classes and methods for representing genotype and haplotype data, and has several ... haplo.stats also contains tests for haplotype associations under a GLM framework, but also provides score tests of association ...
  https://cran.ncc.metu.edu.tr/web/views/Genetics.html
*  MHC Haplotype Project
... The MHC Haplotype Project was conducted between 2000 and 2006 at the Sanger ... MHC Haplotype Project Data. The data from the MHC Haplotype Project are available in .txt file format file for viewing in the ... Haplotype HLA-A HLA-B HLA-C HLA-DRB1 HLA-DQB1 HLA-DPB1 Links:. Vega UCSC. GRC ... The data are colour-coded by haplotype and will initially be displayed showing 1Mb in the centre of the MHC. You are then free ...
  http://www.ucl.ac.uk/cancer/research/department-cancer-biology/medical-genomics-group/past-projects/mhc-haplotype-project
*  Genaissance, AstraZeneca Align To Apply Haplotypes To Disease | BioWorld
BioWorld Online is the news service of record for the biotechnology industry and is updated every business morning. BioWorld Online will keep you up to date on all of the industry's business, science and regulatory news -- mergers and collaborations, FDA hearings and results, breakthroughs in research and much more.
  http://www.bioworld.com/content/genaissance-astrazeneca-align-apply-haplotypes-disease
*  Patent US20060008799 - Rapid haplotyping by single molecule detection - Google Patents
The present invention includes a method for rapid haplotyping a DNA or RNA segment. Two or more target sites on a segment of ... presence or absence of each luminescent hybridization probe on each DNA or RNA segment is detected to determine the haplotype ... a) Targets of haplotyping are all sorts of DNA and RNA variations that are necessary to define a haplotype. They include any ... The haplotype deduced from a genotype is typically done in bulk as follows (inferred haplotypes). The region of interest is PCR ...
  http://www.google.com/patents/US20060008799
*  The Evolution and Diversification of S-Locus Haplotypes in the Brassicaceae Family | Genetics
... sativus haplotypes were found only among the class Ia haplotypes. While all A. lyrata SRK haplotypes were well separated from ... Also, the presence of a 9-bp deletion in exon 7 of all SRK class II haplotypes and in only one of the class I haplotypes ( ... For SCR, only class II haplotypes could be amplified, and six class II haplotypes were used in this study. DNA sequences from ... 1999b), clustered with A. lyrata haplotypes but separately from the Brassica haplotypes. From this observation, Paetsch et al. ...
  http://www.genetics.org/content/181/3/977
*  β-globin gene cluster haplotypes in sickle cell patients from Panamá.
To analyze the frequency of the haplotypes of β-globin gene cluster in randomly selected patients with sickle cell disease (SCD ... Haplotypes*. Hemoglobin, Sickle / genetics*. Hospitalization. Humans. Infant. Male. Multigene Family. Panama. Polymerase Chain ... RESULTS: The Bantu haplotype was predominant with a frequency of 51%, followed by the Benin (30%), Senegal (8.5%), and Cameroon ... OBJECTIVE: To analyze the frequency of the haplotypes of β-globin gene cluster in randomly selected patients with sickle cell ...
  http://www.biomedsearch.com/nih/globin-gene-cluster-haplotypes-in/21387457.html
*  Family Tree DNA - Haplotype research J2a-PH4970,L1064 DYS391=9
Haplotype research J2a-PH4970,L1064 DYS391=9 - Y-DNA Member Distribution Map. Our direct paternal ancestors have passed on ...
  https://www.familytreedna.com/public/J-L250/default.aspx?section=ymap
*  Genotype and Haplotype Reconstruction from Low-Coverage Short Sequencing Reads | SpringerLink
Măndoiu I. (2009) Genotype and Haplotype Reconstruction from Low-Coverage Short Sequencing Reads. In: Rajasekaran S. (eds) ...
  https://link.springer.com/chapter/10.1007%2F978-3-642-00727-9_7
*  A Soybean Transcript Map: Gene Distribution, Haplotype and Single-Nucleotide Polymorphism Analysis | Genetics
Four or more haplotypes were observed in ,5% of the gene fragments. There was a mean of 2.31 haplotypes in the 2032 SNP- ... Haplotype diversity:. Haplotype diversity was calculated in a manner identical to the calculation of gene diversity (Weir 1996 ... where Pij is the frequency of the jth haplotype for the ith locus summed across all haplotypes in the locus. ... Haplotype diversity:. The mean number of haplotypes present among the 6 soybean genotypes in the 2032 SNP-containing STSs was ...
  http://www.genetics.org/content/176/1/685
*  MHC haplotypes modulate strength of natural killer (NK) cell licensing (91.10) | The Journal of Immunology
MHC haplotypes modulate strength of natural killer (NK) cell licensing (91.10) Message Subject (Your Name) has forwarded a page ... MHC haplotypes modulate strength of natural killer (NK) cell licensing (91.10). A. Helena Jonsson and Wayne M. Yokoyama ... Herein, we investigated the licensing impact of the b, d, f, k, q, r, and s H2 haplotypes on Ly49A+ NK cells in MHC-congenic ... stimulation assays indicated that licensing may not be a binary phenomenon as some Ly49A-MHC class I haplotype combinations ...
  http://www.jimmunol.org/content/182/1_Supplement/91.10
*  Expanded CAG repeats in spinocerebellar ataxia (SCA1) segregate with distinct haplotypes in South African families |...
Expanded CAG repeats in spinocerebellar ataxia (SCA1) segregate with distinct haplotypes in South African families. ... D6S89 and D6S274 provided evidence that the expanded SCA1 repeats segregated with three distinct haplotypes in the six families ...
  https://link.springer.com/article/10.1007%2Fs004390050478
*  Dienekes' Anthropology Blog: Haplotype outliers and Y-chromosome age estimation
While haplotypes a-e are all within 1-3 mutations of each other, haplotype f is 5-7 mutations away from any other haplotypes. ... As a practical example, there are 17 mutations for haplotypes a-e (Average = 1.7) and 45 mutations for haplotypes a-f (Average ... The default position seems to be not to analyze a haplotype group's substructure, and to use all sampled haplotypes. This may ... Consider the following table which presents the number of mutations between pairs of haplotypes (a-f):. a. b. c. d. e. ...
  http://dienekes.blogspot.com/2008/12/haplotype-outliers-and-y-chromosome-age.html?showComment=1322849329959
*  Dienekes' Anthropology Blog: Why Y-STR haplotype clusters are not clades
First, such predictions don't rely only on the Y-STR haplotypes, but also on large number of haplotypes with known UEP results ... Is it possible to define a Clade on the basis of a unique haplotype?. The problem is not so much finding a unique haplotype, ... It is perhaps possible to devise a test that would be able to detect all these haplotypes as related. But, any test that would ... But, even if a clear-cut genuine haplotype cluster is detected, it does not constitute a clade, since the time symmetry of Y- ...
  http://dienekes.blogspot.com/2008/10/why-y-str-haplotype-clusters-are-not.html?showComment=1224410760000
*  A Haplotype Reference Panel of over 31,000 individuals and Next Generation Imputation Methods.
... S. Das on behalf of Haplotype ... These haplotypes can be used to guide genotype imputation and haplotype estimation. In preliminary empirical evaluations, our ... The goal of the Haplotype Reference Consortium is to combine haplotype information from ongoing whole genome sequencing studies ... The majority of haplotypes will also be deposited in the European Genotype Archive.. You may contact the first author (during ...
  http://www.ashg.org/2014meeting/abstracts/fulltext/f140122257.htm