*  Organism Registry
Bacteriophage P1 Phage P1 P1 is a temperate bacteriophage (phage) that infects Escherichia coli and a some other bacteria. When ... Bacteriophage T3 Phage T3 Enterobacteria phage T3 is a bacteriophage that infects Escherichia coli bacteria. It is in the genus ... Escherichia coli ECOLX Colibacillosis is a common systemic disease of economic importance in poultry and occurs worldwide. ... ... Arthrobacter is a genus of bacteria that is commonly found in soil. All species in this genus are Gram-positive obligate ...
  https://bch.cbd.int/database/organism-registry/
*  JoVE | Peer Reviewed Scientific Video Journal - Methods and Protocols
... by the fact that most molecular techniques have been developed for distantly-related species such as Escherichia coli and ... The genus Mycobacterium can be difficult to transform; this is mainly caused by the thick and waxy cell wall, but is compounded ... Depending on the quantity of infected cells used, yields of viral DNA range from 150-800 μg or more. The purity of this DNA ... Viruses, particularly bacteriophages (phages), are the most numerous biological entities on Earth1,2. Viruses modulate host ...
  https://www.jove.com/visualize/abstract/22359540/structural-organization-of-dna-in-chlorella-viruses
*  PROCESS OF PRODUCTION OF BACTERIOPHAGE COMPOSITIONS AND METHODS IN PHAGE THERAPY FIELD - Patent application
2 shows the synergy between myoviridae bacteriophages--i.e., "T4-like" bacteriophage genus--production and E. coli AS 19 growth ... This family has two genera: inovirus and plectrovirus. The inovirus genus comprises bacteriophages that infect enterobacteria, ... bacteriophage mu, P1, P2, and T4. Most preferably, the myoviridae comprises bacteriophages of the "T4-like" genus. [0055]The ... This effect is not limited to the MFP Escherichia. coli and occurs with several standard Laboratory strains of E. coli that ...
  http://www.patentsencyclopedia.com/app/20090232770
*  JoVE | Peer Reviewed Scientific Video Journal - Methods and Protocols
Escherichia coli (E. coli) strain. The R6Kγ replication origin allows the plasmid to replicate in pir+ E. coli strains, and the ... The genus Mycobacterium can be difficult to transform; this is mainly caused by the thick and waxy cell wall, but is compounded ... This method was utilized for the study of Gag-MJ4 chimeric viruses derived from 149 subtype C acutely infected Zambians, and ... The Cre/lox system was first described in bacteriophages during the 1980's. Cre recombinase is a Type I topoisomerase that ...
  https://www.jove.com/visualize/abstract/22292089/site-specific-integration-foreign-dna-into-minimal-bacterial-human
*  JoVE | Peer Reviewed Scientific Video Journal - Methods and Protocols
Mapping Bacterial Functional Networks and Pathways in Escherichia Coli using Synthetic Genetic Arrays ... Tre recombinase was able to excise the HIV-1 provirus from the genome HIV-1 infected HeLa cells (see "HIV-1 Proviral DNA ... The Cre/lox system was first described in bacteriophages during the 1980's. Cre recombinase is a Type I topoisomerase that ... catalyzes site-specific recombination of DNA between two loxP (locus of X-over P1) sites. The Cre/lox system does not require ...
  https://www.jove.com/visualize/abstract/21085586/analysis-mice-lacking-dnasei-hypersensitive-sites-at-5-end-igh
*  Genetics - Medical Microbiology - NCBI Bookshelf
... but they have a vast array of biochemical capabilities and patterns of susceptibility to antimicrobial agents or bacteriophages ... Bacterial viruses (bacteriophages or phages) have DNA or RNA as genetic material. The two essential functions of genetic ... whereas the prophage of bacteriophage P1 in E. coli replicates as an extrachromosomal plasmid. ... Figure 5-3One-step growth of bacteriophage. A culture of susceptible bacteria is synchronously infected with bacteriophage ...
  https://www.ncbi.nlm.nih.gov/books/NBK7908/?report=reader
*  The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats | Springer for Research ...
Nakata A, Amemura M, Makino K: Unusual nucleotide arrangement with repeated sequences in the Escherichia coli K-12 chromosome. ... Emerg Infect Dis 1999, 5(2):254-263.PubMedCentralCrossRefPubMedGoogle Scholar ... A similar suggestion was made based upon observations in S. solfataricus P1 and in S. thermophilus [9, 10]. This mechanism is ... Peng X, Brugger K, Shen B, Chen L, She Q, Garrett RA: Genus-specific protein binding to the large clusters of DNA repeats ( ...
  https://rd.springer.com/article/10.1186/1471-2105-8-172
*  JoVE | Peer Reviewed Scientific Video Journal - Methods and Protocols
Escherichia coli SeqA is a negative regulator of DNA replication that prevents premature reinitiation events by sequestering ... The genus Mycobacterium can be difficult to transform; this is mainly caused by the thick and waxy cell wall, but is compounded ... Tre recombinase was able to excise the HIV-1 provirus from the genome HIV-1 infected HeLa cells (see "HIV-1 Proviral DNA ... The Cre/lox system was first described in bacteriophages during the 1980's. Cre recombinase is a Type I topoisomerase that ...
  https://www.jove.com/visualize/abstract/20174470/helical-chirality-link-between-local-interactions-global-topology
*  Prevalence and characterization of multi-drug resistant Salmonella Enterica serovar Gallinarum biovar Pullorum and...
... protocols for the subtyping of Escherichia coli O157:H7, Salmonella, and Shigella for pulse net. Foodborne Pathog. Dis., 3: 59- ... 2. Grimont, P.A., Grimont, F. and Bouvet, P. (2000) Taxonomy of the genus Salmonella. In: Wray, C. and Wray, A., editors. ... Ahmed, A.K.M., Islam, M.T., Haider, M.G. and Hossain, M.M. (2008) Seroprevalence and pathology of naturally infected ... Salmonella specific bacteriophage isolation and characterization. Bangladesh J. Vet. Med., 12: 107-114.. http://dx.doi.org/ ...
  http://www.veterinaryworld.org/Vol.9/January-2016/12.html
*  JoVE | Peer Reviewed Scientific Video Journal - Methods and Protocols
Escherichia coli (E. coli) strain. The R6Kγ replication origin allows the plasmid to replicate in pir+ E. coli strains, and the ... While Trichopria drosophilae infect the pupal stages of the host (Fig. 1A-C), females of the genus Leptopilina (Fig. 1D, 1F, 1G ... The Cre/lox system was first described in bacteriophages during the 1980's. Cre recombinase is a Type I topoisomerase that ... catalyzes site-specific recombination of DNA between two loxP (locus of X-over P1) sites. The Cre/lox system does not require ...
  https://www.jove.com/visualize/abstract/25296163/accidental-genetic-engineers-horizontal-sequence-transfer-from
*  Autozygote
bacteriophage packaging insertion of recombi- nant bacteriophage lambda DNA into E. coli for rep- lication and encapsidation ... bacteriophages; filamentous phage, lambda (λ) bacteriophage, MS2, phi X174, plaque, P1 phage, P22 phage, Q beta phage, ... Escherichia coli strains produce bacte- riocins called colicins (q.v.). Bacteriocins from Pseu- domonas aeruginosa are called ... Avena the genus to which the various species of oats belong.. The most commonly cultivated oat is A. sativa. Avena test a ...
  http://fx.damasgate.com/autozygote/
*  JoVE | Peer Reviewed Scientific Video Journal - Methods and Protocols
... optical biosensor based on a nanostructured porous Si is designed for rapid capture and detection of Escherichia coli K12 ... Tre recombinase was able to excise the HIV-1 provirus from the genome HIV-1 infected HeLa cells (see "HIV-1 Proviral DNA ... The Cre/lox system was first described in bacteriophages during the 1980's. Cre recombinase is a Type I topoisomerase that ... Current commercial PCRs tests for identifying Salmonella target genes unique to this genus. However, there are two species, six ...
  https://www.jove.com/visualize/abstract/22529997/dna-aptamers-against-the-lup-an-1-food-allergen
*  JoVE | Peer Reviewed Scientific Video Journal - Methods and Protocols
Mapping Bacterial Functional Networks and Pathways in Escherichia Coli using Synthetic Genetic Arrays ... Rodents of the genus Peromyscus (deer mice) are the most prevalent native North American mammals. Peromyscus species are used ... The Cre/lox system was first described in bacteriophages during the 1980's. Cre recombinase is a Type I topoisomerase that ... approach efficiently detecting low-copy viral genomes within sections of neuronal tissues from infected animal models. The ...
  https://www.jove.com/visualize/abstract/21858006/evolutionary-genomics-implies-specific-function-ant4-mammalian-anole
*  JoVE | Peer Reviewed Scientific Video Journal - Methods and Protocols
This work puts forward a toolkit that enables the conversion of alkanes by Escherichia coli and presents a proof of principle ... The genus Mycobacterium can be difficult to transform; this is mainly caused by the thick and waxy cell wall, but is compounded ... This method was utilized for the study of Gag-MJ4 chimeric viruses derived from 149 subtype C acutely infected Zambians, and ... The Cre/lox system was first described in bacteriophages during the 1980's. Cre recombinase is a Type I topoisomerase that ...
  https://www.jove.com/visualize/abstract/19809494/the-roles-acting-mechanism-caenorhabditis-elegans-dnase-ii-genes
*  Publications in April - June 2014 | Edinburgh Infectious Diseases
Identification of Bacteriophage-Encoded Anti-sRNAs in Pathogenic Escherichia coli. Mol Cell. 2014 Jun 4. pii: S1097-2765(14) ... Toye P1, Handel I, Gray J, Kiara H, Thumbi S, Jennings A, van Wyk IC, Ndila M, Hanotte O, Coetzer K, Woolhouse M, Bronsvoort M ... Phan TG1, Vo NP, Simmonds P, Samayoa E, Naccache S, Chiu CY, Delwart E. Rosavirus: the prototype of a proposed new genus of the ... Local cytokine transcription in naïve and previously infected sheep and lambs following challenge with Teladorsagia ...
  http://www.eid.ed.ac.uk/eid/publications-april-june-2014
*  JoVE | Peer Reviewed Scientific Video Journal - Methods and Protocols
The system comprising bacteriophage (phage) lambda and the bacterium E. coli has long served as a paradigm for cell-fate ... We also present the first expanded study on bacteriophages of the genus Achromobacter that has been so far a blank slate with ... Using these probes, Gram-negative bacteria including Pseudomonas spp., Pseudomonas aeruginosa and Escherichia coli as well as ... Figure 1. Detection schematic. The phage are mixed with the sample, the phage infects the cell, luxAB are expressed, and the ...
  https://www.jove.com/visualize/abstract/24466294/isolation-characterization-numerous-novel-phages-targeting-diverse
*  Identification of three extra-chromosomal replicons in Leptospira pathogenic strain and development of new shuttle vectors |...
L. interrogans-Escherichia coli shuttle vectors, constructed with the predicted replication elements of single rep or rep ... The LE1 bacteriophage replicates as a plasmid within Leptospira biflexa: construction of an L. biflexa-Escherichia coli shuttle ... SPC-P1: a pathogenicity-associated prophage of Salmonella paratyphi C. BMC Genomics. 2010;11:729.View ArticlePubMed Central ... Infect Immun. 2008;76(6):2411-9.View ArticlePubMed CentralPubMedGoogle Scholar. ...
  https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-015-1321-y
*  IJMS | Free Full-Text | Deleted in Malignant Brain Tumors-1 Protein (DMBT1): A Pattern Recognition Receptor with Multiple...
Escherichia coli and H. pylori [66]. Bacterial adhesion to the peptide correlates with adhesion to the full molecule (Figure 2 ... adherence and aggregation of mutans streptococci by use of monoclonal-antibodies against the major surface adhesin-P1. Infect. ... Molecular Interactions and Protein-Induced DNA Hairpin in the Transcriptional Control of Bacteriophage Ø29 DNA ... Toxoplasma and Plasmodium and algae of the genus Chlamidomonas [43,44]. The organism with the highest number of SRCR domains is ...
  http://www.mdpi.com/1422-0067/11/12/5212/htm
*  JoVE | Peer Reviewed Scientific Video Journal - Methods and Protocols
This work puts forward a toolkit that enables the conversion of alkanes by Escherichia coli and presents a proof of principle ... This method was utilized for the study of Gag-MJ4 chimeric viruses derived from 149 subtype C acutely infected Zambians, and ... The Cre/lox system was first described in bacteriophages during the 1980's. Cre recombinase is a Type I topoisomerase that ... catalyzes site-specific recombination of DNA between two loxP (locus of X-over P1) sites. The Cre/lox system does not require ...
  https://www.jove.com/visualize/abstract/19787052/valinomycin-biosynthetic-gene-cluster-streptomyces-conservation
*  GENETIC PERTURBATION OF THE RNA DEGRADOSOME PROTEIN COMPLEX - ZYMERGEN INC.
... coli, E. coli 0157:H7, E. coli 0104 :H4, Escherichia coli 0121, Escherichia coli O104:H21, Escherichia coli Kl, and Escherichia ... Thus, if one has promoters P1-P8 (representing eight promoters that have been identified and/or generated to exhibit a range of ... This characterization can refer to not only the identified taxonomic genera of the tables and figures, but also the identified ... Vectors can be plasmids, viruses, bacteriophages, pro-viruses, phagemids, transposons, artificial chromosomes, and the like, ...
  http://www.sumobrain.com/patents/wipo/Genetic-perturbation-rna-degradosome-protein/WO2018009372A1.html
*  RECOMBINANT BACTERIOPHAGE AND METHODS FOR THEIR USE - Patent application
Enterohemorrhagic Escherichia coli O157:H7 gal mutants are sensitive to bacteriophage P1 and defective in intestinal ... Bacteriophage P2, which infects many E. coli strains, has a tail fiber encoding gene H, (SEQ ID NO:25) that has significant ... Non-limiting examples of such bacteria include those of the genus Escherichia, Staphylococcus, Clostridium, Acinetobacter, ... 0184] Bacteriophage phiV10 belongs to the podoviridae group and can infect most common E. coli O157:H7 strains (Waddell and ...
  http://www.patentsencyclopedia.com/app/20130184183
*  Recombinant Bacteriophage for Detection of Nosocomial Infection - Patent application
For instance, a class of phages, for example all phages specific to members of a first genus, e.g., Escherichia, may encode a ... For instance, while Escherichia coli, Staphylococcus aureus, and Pseudomonas aeruginosa may be of particular interest in ... 0024] Specific phages may include, without limitation, Escherichia phages (lambda, M13, mp 18, MS2, Mu, P1, PhiX174, QB, R17, ... For instance, under normal circumstances, a bacterium that has been infected with the DNA of a bacteriophage will lyse ...
  http://www.patentsencyclopedia.com/app/20120143024
*  JoVE | Peer Reviewed Scientific Video Journal - Methods and Protocols
Mapping Bacterial Functional Networks and Pathways in Escherichia Coli using Synthetic Genetic Arrays ... While naíve ticks can be infected with B. burgdorferi by feeding them on infected mice, the molting process takes several weeks ... It belongs to the genus Phlebovirus in the family Bunyaviridae and is one of the most virulent members of this family. Several ... The Cre/lox system was first described in bacteriophages during the 1980's. Cre recombinase is a Type I topoisomerase that ...
  https://www.jove.com/visualize/abstract/24810170/synthesis-rpos-is-dependent-on-putative-enhancer-binding-protein-rrp2
*  Protocols and Video Articles Authored by So Young Lee (Translated to Japanese)
Mar, 2017 , Pubmed ID: 28300196 Recently, we have developed a novel Mycobacterium-Escherichia coli shuttle vector system using ... Patients infected with Type II tend to be younger at infection than those infected with Type I (56.7 vs 62.3, p = 0.051). Type ... Bioinspired M-13 Bacteriophage-based Photonic Nose for Differential Cell Recognition Chemical Science. Feb, 2017 , Pubmed ID: ... Nucleotide sequence analysis of the 26S rDNA gene classified the strains into 13 species belonging to five genera; Pichia ...
  https://www.jove.com/author/So+Young_Lee?language=Japanese
*  ASMscience | Studying Evolution Using
Perals, K.,, F. Cornet,, Y. Merlet,, I. Delon, and, J. M. Louarn. 2000. Functional polarization of the Escherichia coli ... Iino, T., and, K. Kutsukake. 1981. Trans-acting genes of bacteriophages P1 and Mu mediate inversion of a specific DNA segment ... Smith, N. H.,, E. C. Holmes,, G. M. Donovan,, G. A. Carpenter, and, B. G. Spratt. 1999. Networks and groups within the genus ... Infect. Immun. 69:7471-7480.. ... Berlyn, M. K. 1998. Linkage map of Escherichia coli K-12, ...
  http://www.asmscience.org/content/book/10.1128/9781555815622.ch02