*  3D Genomes | CNAG
3D Genomes is a Plan Nacional project funded by the Programa Estatal de Fomento de la Investigación Científica y Técnica de ... 3D Genomes proposes to continue developing computational approaches for integrating experimental data with polymer physics, ... Then, such methods will be applied to address outstanding questions in genome biology, which shall provide insight into the ... The broad objective of 3D Genomes is to develop, apply and provide new computational methods for the structural determination ...
  http://cnag.crg.eu/projects/3d-genomes
*  Transcript: Rbp2-202 (MGP PahariEiJ T0024860.1) - Summary - Mus pahari - Ensembl genome browser 90
Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the ...
  http://www.ensembl.org/Mus_pahari/Transcript/Summary?t=MGP_PahariEiJ_T0024860
*  "The mouse genome database (MGD): new features facilitating a model sys" by J T. Eppig, J A. Blake et al.
... gene mapping data and genome coordinates, and comparative gene data focused on mammals. Data are integrated from diverse ... The mouse genome database (MGD, http://www.informatics.jax.org/), the international community database for mouse, provides ... Eppig, J T.; Blake, J A.; Bult, C J.; Kadin, J A.; and Richardson, J E., "The mouse genome database (MGD): new features ... gene mapping data and genome coordinates, and comparative gene data focused on mammals. Data are integrated from diverse ...
  https://mouseion.jax.org/stfb2000_2009/1501/
*  Exploring the bovine genome
... bovine genome. The US National Human Genome Research Institute (NHGRI) is considering a proposal to sequence cow, but the plan ... While the cow genome data from the MetaMorphix project are proprietary, separate public efforts are moving forward to sequence ... Genome News Network is an editorially independent online publication of the J. Craig Venter Institute.. © 2000 - 2004 J. Craig ... The main goal is to find the genetic basis of phenotypic traits in cattle,' says Band, noting that the bovine genome is about ...
  http://www.genomenewsnetwork.org/articles/07_02/bovine_genome.shtml
*  Transcript: Gm10192-201 (MGP PahariEiJ T0078153.1) - Summary - Mus pahari - Ensembl genome browser 90
Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the ...
  http://www.ensembl.org/Mus_pahari/Transcript/Summary?t=MGP_PahariEiJ_T0078153
*  Reconstruction of Ancestral Genomes
Comparative genomics allow hypotheses about the content of the genome of ancestral species and for many major branching points ... on the tree of life, hypothetical ancestral genomes can be reconstructed ... The ancestral genome of sciurids would have a diploid number of 2n=38. It is assumed that the genome of sciurids is very close ... Reconstruction of the vertebrate ancestral genome reveals dynamic genome reorganization in early vertebrates. Genome Research ...
  http://www.els.net/WileyCDA/ElsArticle/refId-a0020752.html
*  The graph GΠΠ of a genome Π. Π is a genome on the s | Open-i
Π is a genome on the set of genes {1,...,14}, containing three chromosomes, two of them being linear and one circular. Its adja ... The graph GΠΠ of a genome Π. ... Figure 1: The graph GΠΠ of a genome Π. Π is a genome on the set ... Genome median and genome halving are combinatorial optimization problems that aim at reconstructing ancestral genomes as well ... Genome median and genome halving are combinatorial optimization problems that aim at reconstructing ancestral genomes as well ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC2683817_1471-2105-10-120-1&req=4
*  Transcript: Ppp3ca-205 (MGP PahariEiJ T0071617.1) - Summary - Mus pahari - Ensembl genome browser 90
Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the ...
  http://www.ensembl.org/Mus_pahari/Transcript/Summary?t=MGP_PahariEiJ_T0071617
*  Genome Assembly and Annotation Team | CNAG
The Genome Assembly and Annotation Team carries out "genome projects" in the classical sense, from design of the de novo ... Annotation of the gene content of the newly assembled genome is key to understanding the genome, once finished. On this front ... and cancer genomes. Genome assembly is not only difficult due to the sheer size of the data and computational requirements, but ... The team specializes in large eukaryotic genomes and transcriptomes, especially those of animals and plants. Other types of ...
  http://cnag.crg.eu/teams/genome-research-unit/genome-assembly-and-annotation-team
*  Transcript: Rnf121-203 (MGP PahariEiJ T0017907.1) - Summary - Mus pahari - Ensembl genome browser 90
Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the ...
  http://www.ensembl.org/Mus_pahari/Transcript/Summary?t=MGP_PahariEiJ_T0017907
*  A whole-genome assembly of the domestic cow, Bos taurus | Genome Biology | Full Text
By using independent mapping data and conserved synteny between the cow and human genomes, we were able to construct an ... was sequenced using a mixture of hierarchical and whole-genome shotgun sequencing methods. We have assembled the 35 million ... covering more of the genome; thousands of gaps have been closed; many erroneous inversions, deletions, and translocations have ... assembly with excellent large-scale contiguity in which a large majority (approximately 91%) of the genome has been placed onto ...
  https://genomebiology.biomedcentral.com/articles/10.1186/gb-2009-10-4-r42
*  UPDATE - Vertebrate Genomes Project Co-Leader Erich Jarvis will use BioNano to Generate Thousands of Reference Genomes |...
UPDATE - Vertebrate Genomes Project Co-Leader Erich Jarvis will use BioNano to Generate Thousands of Reference Genomes. ... System for next-generation mapping to play an integral role in generating quality reference genomes for the Genome 10K (G10K) ... The mission of G10K and B10K projects is to generate high-quality references, diploid to multiploid, genomes of vertebrate ... They concluded that a combination of BioNano's NGM and PacBio sequencing will yield well-structured and informative genome ...
  http://stockguru.com/2016/10/13/update-vertebrate-genomes-project-co-leader-erich-jarvis-will-use-bionano-to-generate-thousands-of-reference-genomes/
*  BioNews - Human history is written in everyone's genome
Each human genome contains information from the mother and the father, and the differences between these at any place in the ... The genome of an Irish man has been fully sequenced for the first time, and reveals a unique 'Irish genetic signature'. ... An individual's genome can be used to accurately predict their ancestral origin, to the nearest five miles, a new study has ... Dr Li added: 'Since the genome sequence is so large, we can combine the information from tens of thousands of different places ...
  http://www.bionews.org.uk/page_102163.asp
*  Strains - Rat Genome Database
A click on 'Strain Nomenclature' goes to a page that has links to the guidelines that are approved by the Rat Genome ... All the different types of strains are named according to the strain nomenclature guidelines approved by the Rat Genome ... The terms come from the Mammalian Phenotype Ontology developed at MGI (http://www.informatics.jax.org/, Genome Biol. 6(1):R7. ...
  http://rest.rgd.mcw.edu/wg/help3/strains
*  Genome evolution - Wikipedia
Genome evolution is the process by which a genome changes in structure (sequence) or size over time. The study of genome ... namely that the number of genes that make up the genome does not correlate with genome size. In other words, the genome size is ... Genomes can also shrink because of deletions. A famous example for such gene decay is the genome of Mycobacterium leprae, the ... Whole genome duplication is common in fungi as well as plant species. An example of extreme genome duplication is represented ...
  https://en.wikipedia.org/wiki/Genome_evolution
*  National Human Genome Research Institute (NHGRI)
The National Human Genome Research Institute conducts genetic and genomic research, funds genetic and genomic research and ... The National Human Genome Research Institute (NHGRI) has appointed Carolyn Hutter, Ph.D. the director of the Division of Genome ... The National Human Genome Research Institute today launched a new round of strategic planning that will establish a 2020 vision ... New Director of NHGRI's Division of Genome Sciences: Carolyn Hutter, Ph.D.. This month's The Genomics Landscape features ...
  https://www.genome.gov/
*  Home | G3: Genes | Genomes | Genetics
Genome Report. *. Insights into the Structure of the Spruce Budworm (Choristoneura fumiferana) Genome, as Revealed by Molecular ... Detecting de Novo Homoeologous Recombination Events in Cultivated Brassica napus Using a Genome-Wide SNP Array Erin E. Higgins ... Genome-Wide Association and Regional Heritability Mapping of Plant Architecture, Lodging and Productivity in Phaseolus vulgaris ... Reference Quality Genome Assemblies of Three Parastagonospora nodorum Isolates Differing in Virulence on Wheat ...
  http://www.g3journal.org
*  UW Genome Sciences
Waterston talked about his career and genome sciences. Read the interview.. New Faculty. Dr. Kelley Harris joined Genome ... Genome Sciences Symposium: Sequencing, Understanding, and Editing the Genome to Improve Human Health. Foege Auditorium and Kane ... Genome Sciences is pleased to welcome Dr. Brian Beliveau to the department in September 2018 as our newest faculty member. Dr. ... When Bob Waterston became chair of the Department of Genome Sciences in 2002, it was a major coup for UW Medicine. As one of ...
  http://www.gs.washington.edu
*  Learning About Klinefelter Syndrome - National Human Genome Research Institute (NHGRI)
Klinefelter syndrome is a condition that occurs in men as a result of an extra X chromosome. The most common symptom is infertility.. Humans have 46 chromosomes, which contain all of a person's genes and DNA. Two of these chromosomes, the sex chromosomes, determine a person?s gender. Both of the sex chromosomes in females are called X chromosomes. (This is written as XX.) Males have an X and a Y chromosome (written as XY). The two sex chromosomes help a person develop fertility and the sexual characteristics of their gender.. Most often, Klinefelter syndrome is the result of one extra X (written as XXY). Occasionally, variations of the XXY chromosome count may occur, the most common being the XY/XXY mosaic. In this variation, some of the cells in the male's body have an additional X chromosome, and the rest have the normal XY chromosome count. The percentage of cells containing the extra chromosome varies from case to case. In some instances, XY/XXY mosaics may have enough normally functioning ...
  https://www.genome.gov/19519068/
*  User Program Info - DOE Joint Genome Institute
DAS Tool for Genome Reconstruction from Metagenomes. Through the JGI's Emerging Technologies Opportunity Program (ETOP), ... Researchers from the U.S. Department of Energy Joint Genome Institute (DOE JGI) have developed a suite of build-optimization ... allowing them to reconstruct more near-complete genomes from soil metagenomes compared to other methods. The work was published ... a reference catalog of rumen microbial genomes and isolates cultivated and sequenced from the Hungate1000 collection produced ...
  https://jgi.doe.gov/user-program-info/
*  1000 Genomes | A Deep Catalog of Human Genetic Variation
IGSR and the 1000 Genomes Project. The International Genome Sample Resource (IGSR) was established to ensure the ongoing ... The International Genome Sample Resource (IGSR) has been established at EMBL-EBI to continue supporting data generated by the ... 1000 Genomes Project, supplemented with new data and new analysis. The IGSR is funded by the Wellcome Trust (grant number ... usability of data generated by the 1000 Genomes Project and to extend the data set. More information is available about the ...
  http://www.internationalgenome.org
*  Genome-Wide Medicago truncatula Small RNA Analysis Revealed Novel MicroRNAs and Isoforms Differentially Regulated in Roots and...
Genome-Wide Medicago truncatula Small RNA Analysis Revealed Novel MicroRNAs and Isoforms Differentially Regulated in Roots and ... Genome-Wide Medicago truncatula Small RNA Analysis Revealed Novel MicroRNAs and Isoforms Differentially Regulated in Roots and ... Genome-Wide Medicago truncatula Small RNA Analysis Revealed Novel MicroRNAs and Isoforms Differentially Regulated in Roots and ... Genome-Wide Medicago truncatula Small RNA Analysis Revealed Novel MicroRNAs and Isoforms Differentially Regulated in Roots and ...
  http://www.plantcell.org/content/21/9/2780.short
*  The Sino-Danish Pig Genome Project
... Home. Genomic seqs. EST seqs. PigEST. Links. piggneome.org. ... Pigs in sequence space: A 0.66X coverage pig genome survey based on shotgun sequencing Rasmus Wernersson, Mikkel H Schierup, ... The Sino-Danish pig genome sequencing project has generated a resource of 3.8 million shotgun reads 0.66 coverage and ... Health and Production it was possible to establish the Sino-Danish pig genome project which originally was a collaboration ...
  http://www.piggenome.dk
*  Human genome - Wikipedia
Whereas a genome sequence lists the order of every DNA base in a genome, a genome map identifies the landmarks. A genome map is ... of total genome), SINEs (13.1% of total genome) including Alu elements, LINEs (20.4% of total genome), SVAs and Class II DNA ... Personal genomes[edit]. See also: Personal genomics. A personal genome sequence is a (nearly) complete sequence of the chemical ... Human genome sequence compression[edit]. The human reference genome (GRC v38) has been successfully compressed to ~5.2-fold ( ...
  https://en.wikipedia.org/wiki/Human_genome
*  Bovine genome - Wikipedia
The genome of a female Hereford cow has been sequenced by the Bovine Genome Sequencing and Analysis Consortium, a team of ... Elsik, C.G. # (2009). Bovine Genome Sequencing and Analysis Consortium. "The genome sequence of taurine cattle: a window to ... "Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds". Science. 324 (5926): 528-532. doi:10.1126 ... "Cow genome unraveled in bid to improve meat, milk". Associated Press. 2009-04-23. Retrieved 2009-04-23.. ...
  https://en.wikipedia.org/wiki/Bovine_Genome_Project