*  3D Genomes | CNAG
3D Genomes is a Plan Nacional project funded by the Programa Estatal de Fomento de la Investigación Científica y Técnica de ... 3D Genomes proposes to continue developing computational approaches for integrating experimental data with polymer physics, ... Then, such methods will be applied to address outstanding questions in genome biology, which shall provide insight into the ... The broad objective of 3D Genomes is to develop, apply and provide new computational methods for the structural determination ...
  http://cnag.crg.eu/projects/3d-genomes
*  "The mouse genome database (MGD): new features facilitating a model sys" by J T. Eppig, J A. Blake et al.
... gene mapping data and genome coordinates, and comparative gene data focused on mammals. Data are integrated from diverse ... The mouse genome database (MGD, http://www.informatics.jax.org/), the international community database for mouse, provides ... Eppig, J T.; Blake, J A.; Bult, C J.; Kadin, J A.; and Richardson, J E., "The mouse genome database (MGD): new features ... gene mapping data and genome coordinates, and comparative gene data focused on mammals. Data are integrated from diverse ...
  https://mouseion.jax.org/stfb2000_2009/1501/
*  Transcript: Cetn2-203 (MGP PahariEiJ T0089284.1) - Summary - Mus pahari - Ensembl genome browser 90
Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the ...
  http://www.ensembl.org/Mus_pahari/Transcript/Summary?t=MGP_PahariEiJ_T0089284
*  Transcript: Lmo2-202 (MGP PahariEiJ T0064400.1) - Summary - Mus pahari - Ensembl genome browser 90
Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the ...
  http://www.ensembl.org/Mus_pahari/Transcript/Summary?t=MGP_PahariEiJ_T0064400
*  Transcript: Proser2-201 (MGP PahariEiJ T0040022.1) - Summary - Mus pahari - Ensembl genome browser 90
Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the ...
  http://www.ensembl.org/Mus_pahari/Transcript/Summary?t=MGP_PahariEiJ_T0040022
*  Reconstruction of Ancestral Genomes
Comparative genomics allow hypotheses about the content of the genome of ancestral species and for many major branching points ... on the tree of life, hypothetical ancestral genomes can be reconstructed ... The ancestral genome of sciurids would have a diploid number of 2n=38. It is assumed that the genome of sciurids is very close ... Reconstruction of the vertebrate ancestral genome reveals dynamic genome reorganization in early vertebrates. Genome Research ...
  http://www.els.net/WileyCDA/ElsArticle/refId-a0020752.html
*  The graph GΠΠ of a genome Π. Π is a genome on the s | Open-i
Π is a genome on the set of genes {1,...,14}, containing three chromosomes, two of them being linear and one circular. Its adja ... The graph GΠΠ of a genome Π. ... Figure 1: The graph GΠΠ of a genome Π. Π is a genome on the set ... Genome median and genome halving are combinatorial optimization problems that aim at reconstructing ancestral genomes as well ... Genome median and genome halving are combinatorial optimization problems that aim at reconstructing ancestral genomes as well ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC2683817_1471-2105-10-120-1&req=4
*  Genome Assembly and Annotation Team | CNAG
The Genome Assembly and Annotation Team carries out "genome projects" in the classical sense, from design of the de novo ... Annotation of the gene content of the newly assembled genome is key to understanding the genome, once finished. On this front ... and cancer genomes. Genome assembly is not only difficult due to the sheer size of the data and computational requirements, but ... The team specializes in large eukaryotic genomes and transcriptomes, especially those of animals and plants. Other types of ...
  http://cnag.crg.eu/teams/genome-research-unit/genome-assembly-and-annotation-team
*  A whole-genome assembly of the domestic cow, Bos taurus | Genome Biology | Full Text
Seven years after the first whole-genome assembly of the human genome [1], sequencing and assembly of mammalian genomes has ... Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence. Genome Biol. 2002, 3: ... The genome of the domestic cow, Bos taurus, was sequenced using a mixture of hierarchical and whole-genome shotgun sequencing ... Havlak P, Chen R, Durbin KJ, Egan A, Ren Y, Song XZ, Weinstock GM, Gibbs RA: The Atlas genome assembly system. Genome Res. 2004 ...
  https://genomebiology.biomedcentral.com/articles/10.1186/gb-2009-10-4-r42
*  UPDATE - Vertebrate Genomes Project Co-Leader Erich Jarvis will use BioNano to Generate Thousands of Reference Genomes |...
UPDATE - Vertebrate Genomes Project Co-Leader Erich Jarvis will use BioNano to Generate Thousands of Reference Genomes. ... System for next-generation mapping to play an integral role in generating quality reference genomes for the Genome 10K (G10K) ... The mission of G10K and B10K projects is to generate high-quality references, diploid to multiploid, genomes of vertebrate ... They concluded that a combination of BioNano's NGM and PacBio sequencing will yield well-structured and informative genome ...
  http://stockguru.com/2016/10/13/update-vertebrate-genomes-project-co-leader-erich-jarvis-will-use-bionano-to-generate-thousands-of-reference-genomes/
*  Transcript: Pacsin3-212 (MGP PahariEiJ T0064055.1) - Summary - Mus pahari - Ensembl genome browser 90
Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the ...
  http://www.ensembl.org/Mus_pahari/Transcript/Summary?t=MGP_PahariEiJ_T0064055
*  BioNews - Human history is written in everyone's genome
Each human genome contains information from the mother and the father, and the differences between these at any place in the ... The genome of an Irish man has been fully sequenced for the first time, and reveals a unique 'Irish genetic signature'. ... An individual's genome can be used to accurately predict their ancestral origin, to the nearest five miles, a new study has ... Dr Li added: 'Since the genome sequence is so large, we can combine the information from tens of thousands of different places ...
  http://www.bionews.org.uk/page_102163.asp
*  Transcript: Setd1b-205 (MGP PahariEiJ T0058894.1) - Summary - Mus pahari - Ensembl genome browser 90
Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the ...
  http://www.ensembl.org/Mus_pahari/Transcript/Summary?t=MGP_PahariEiJ_T0058894
*  Strains - Rat Genome Database
A click on 'Strain Nomenclature' goes to a page that has links to the guidelines that are approved by the Rat Genome ... All the different types of strains are named according to the strain nomenclature guidelines approved by the Rat Genome ... The terms come from the Mammalian Phenotype Ontology developed at MGI (http://www.informatics.jax.org/, Genome Biol. 6(1):R7. ...
  http://rest.rgd.mcw.edu/wg/help3/strains
*  Genome evolution - Wikipedia
Genome evolution is the process by which a genome changes in structure (sequence) or size over time. The study of genome ... namely that the number of genes that make up the genome does not correlate with genome size. In other words, the genome size is ... Genomes can also shrink because of deletions. A famous example for such gene decay is the genome of Mycobacterium leprae, the ... Whole genome duplication is common in fungi as well as plant species. An example of extreme genome duplication is represented ...
  https://en.wikipedia.org/wiki/Genome_evolution
*  National Human Genome Research Institute (NHGRI)
The National Human Genome Research Institute conducts genetic and genomic research, funds genetic and genomic research and ... The National Human Genome Research Institute (NHGRI) has appointed Carolyn Hutter, Ph.D. the director of the Division of Genome ... The National Human Genome Research Institute today launched a new round of strategic planning that will establish a 2020 vision ... New Director of NHGRI's Division of Genome Sciences: Carolyn Hutter, Ph.D.. This month's The Genomics Landscape features ...
  https://www.genome.gov/
*  Home | G3: Genes | Genomes | Genetics
Genome Report. *. Insights into the Structure of the Spruce Budworm (Choristoneura fumiferana) Genome, as Revealed by Molecular ... Detecting de Novo Homoeologous Recombination Events in Cultivated Brassica napus Using a Genome-Wide SNP Array Erin E. Higgins ... Genome-Wide Association and Regional Heritability Mapping of Plant Architecture, Lodging and Productivity in Phaseolus vulgaris ... Reference Quality Genome Assemblies of Three Parastagonospora nodorum Isolates Differing in Virulence on Wheat ...
  http://www.g3journal.org
*  Learning About Klinefelter Syndrome - National Human Genome Research Institute (NHGRI)
Klinefelter syndrome is a condition that occurs in men as a result of an extra X chromosome. The most common symptom is infertility.. Humans have 46 chromosomes, which contain all of a person's genes and DNA. Two of these chromosomes, the sex chromosomes, determine a person?s gender. Both of the sex chromosomes in females are called X chromosomes. (This is written as XX.) Males have an X and a Y chromosome (written as XY). The two sex chromosomes help a person develop fertility and the sexual characteristics of their gender.. Most often, Klinefelter syndrome is the result of one extra X (written as XXY). Occasionally, variations of the XXY chromosome count may occur, the most common being the XY/XXY mosaic. In this variation, some of the cells in the male's body have an additional X chromosome, and the rest have the normal XY chromosome count. The percentage of cells containing the extra chromosome varies from case to case. In some instances, XY/XXY mosaics may have enough normally functioning ...
  https://www.genome.gov/19519068/
*  Genome-Wide Medicago truncatula Small RNA Analysis Revealed Novel MicroRNAs and Isoforms Differentially Regulated in Roots and...
Genome-Wide Medicago truncatula Small RNA Analysis Revealed Novel MicroRNAs and Isoforms Differentially Regulated in Roots and ... Genome-Wide Medicago truncatula Small RNA Analysis Revealed Novel MicroRNAs and Isoforms Differentially Regulated in Roots and ... Genome-Wide Medicago truncatula Small RNA Analysis Revealed Novel MicroRNAs and Isoforms Differentially Regulated in Roots and ... Genome-Wide Medicago truncatula Small RNA Analysis Revealed Novel MicroRNAs and Isoforms Differentially Regulated in Roots and ...
  http://www.plantcell.org/content/21/9/2780.short
*  The Sino-Danish Pig Genome Project
... Home. Genomic seqs. EST seqs. PigEST. Links. piggneome.org. ... Pigs in sequence space: A 0.66X coverage pig genome survey based on shotgun sequencing Rasmus Wernersson, Mikkel H Schierup, ... The Sino-Danish pig genome sequencing project has generated a resource of 3.8 million shotgun reads 0.66 coverage and ... Health and Production it was possible to establish the Sino-Danish pig genome project which originally was a collaboration ...
  http://www.piggenome.dk
*  Human genome - Wikipedia
Whereas a genome sequence lists the order of every DNA base in a genome, a genome map identifies the landmarks. A genome map is ... of total genome), SINEs (13.1% of total genome) including Alu elements, LINEs (20.4% of total genome), SVAs and Class II DNA ... Personal genomes[edit]. See also: Personal genomics. A personal genome sequence is a (nearly) complete sequence of the chemical ... Human genome sequence compression[edit]. The human reference genome (GRC v38) has been successfully compressed to ~5.2-fold ( ...
  https://en.wikipedia.org/wiki/Human_genome
*  Bovine genome - Wikipedia
The genome of a female Hereford cow has been sequenced by the Bovine Genome Sequencing and Analysis Consortium, a team of ... Elsik, C.G. # (2009). Bovine Genome Sequencing and Analysis Consortium. "The genome sequence of taurine cattle: a window to ... "Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds". Science. 324 (5926): 528-532. doi:10.1126 ... "Cow genome unraveled in bid to improve meat, milk". Associated Press. 2009-04-23. Retrieved 2009-04-23.. ...
  https://en.wikipedia.org/wiki/Bovine_Genome_Project
*  Talk:Genome Biology - Wikipedia
I have just modified one external link on Genome Biology. Please take a moment to review my edit. If you have any questions, or ... "genome biology" returns 2181 references (so it's cited frequently). *It has an impact factor of 6.59, meaning articles ... Retrieved from "https://en.wikipedia.org/w/index.php?title=Talk:Genome_Biology&oldid=759110740" ...
  https://en.wikipedia.org/wiki/Talk:Genome_Biology
*  Simpler Genome Sequencing
... A startup hopes to make the technology cheap enough that it's feasible for a typical hospital lab.. * ... Feist says Noblegen's goal is to aggressively drive down the cost and increase the speed of sequencing whole genomes to a point ... Today, it takes about a month and $10,000 to $40,000 to sequence a human genome. The "next generation" sequencing technologies ... "We want to deliver whole genome sequencing in the [hospital] lab within the financial constraints of the health-care system," ...
  https://www.technologyreview.com/s/423994/simpler-genome-sequencing/amp/
*  Genome Analysis
Genome projects typically involve three main phases: DNA sequencing, assembly of DNA to represent original chromosome, and ... Create a reference genome for successive analyses. The development of suitable tools to assist in the genome analysis process ... There are three main steps to annotate the genome, which include to:. *Identify the portions of the genome that are not ... Connect the main elements of the genome with biological information. It is important to consider how the genome is similar to ...
  https://www.news-medical.net/life-sciences/Genome-Analysis.aspx