An expanded taxonomy of hepatitis C virus genotype 6: Characterization of 22 new full-length viral genomes. - Oxford...
With these 22 new genomes, HCV-6 now has a diverse and extended taxonomic structure, comprised of 28 assigned subtypes (denoted ... 6a-6xe) and 27 unassigned lineages, all of which have been represented by full-length genomes. Our phylogenetic analyses also ... We characterized the full-length genomes of 22 hepatitis C virus genotype 6 (HCV-6) isolates: 10 from Vietnam (classified into ... Full-length genome, Genotype 6, HCV, Laos, Sequence, Animals, China, Genetic Variation, Genome, Viral, Genotype, Hepacivirus, ...https://www.neuroscience.ox.ac.uk/publications/504606
Microbiology Society Journals | Comparative analysis of the full genome sequence of European bat lyssavirus type 1 and type 2...
The lengths of each complete viral genome for EBLV-1 and EBLV-2 were 11 966 and 11 930 base pairs, respectively, and follow the ... standard rhabdovirus genome organization of five viral proteins. Comparison with other lyssavirus sequences demonstrates ... The lengths of each complete viral genome for EBLV-1 and EBLV-2 were 11 966 and 11 930 base pairs, respectively, and follow the ... Auewarakul, P. ( 2005 ). Composition bias and genome polarity of RNA viruses. Virus Res 109, 33-37.[CrossRef] ...http://jgv.microbiologyresearch.org/content/journal/jgv/10.1099/vir.0.82692-0
Production of transgenic plant-derived vaccines via plastid transformation technology - OpenThesis
Since each plant cell contains up to 10,000 copies of identical plastid genome, plastid engineering should result in very high ... In addition, due to the prokaryotic feature of the plastids, engineering the plastid genome bears the advantages of expressing ... Simultaneously, an alcohol-inducible alc gene expression system is established and integrated into the tobacco nuclear genome ... Keywords:plastids transgenic plants vaccines viral antigens. ISBN:. Date of Publication:01/01/2004 ...http://www.openthesis.org/documents/Production-transgenic-plant-derived-vaccines-512042.html
Microbiology: Virology-1 Flashcards by neurodome zzzz | Brainscape
Reassortment of viral genome (when human flu A virus reassembles with swine flu A virus) causes PANDEMICS! Most deadly! ... Knowledge GenomeTM Brainscape Certified Browse over 1 million classes created by top students, professors, publishers, and ... Genome of virus A can be partially or completely coated (forming pseudovirion) with the surface protein from virus B. Type B ... What virus is the RNA translated into 1 large polypeptide that is cleaved by proteases into functional viral proteins? ...https://www.brainscape.com/flashcards/microbiology-virology-1-865081/packs/1547141
Bio 2 Flashcards by Emma Brown | Brainscape
How does the density of viral, prokaryotic and eukaryotic genomes compare? viruses- very high density. prokaryotes- high ... after transcription and translation of the transposase, it can cut the transposon out of the genome and paste in another spot ... when there are 2 transposons with inverted repeats on either side of a "central region" (part of the genome) ... How do the sizes of genomes of viruses, prokaryotes and eukaryotes compare? ...https://www.brainscape.com/flashcards/bio-2-4023921/packs/5869683
Architecture of the Complex Formed by Large and Small Terminase Subunits from Bacteriophage P22. - PubMed - NCBI
Packaging of viral genomes inside empty procapsids is driven by a powerful ATP-hydrolyzing motor, formed in many double- ... Salmonella virus; electron microscopy; large terminase; small terminase bacteriophage P22; viral genome-packaging motor ... This is the first direct visualization of a purified viral terminase complex analyzed in the absence of DNA and procapsid. ... transiently docked at the portal vertex during genome packaging. Despite recent progress in elucidating the structure of ...https://www.ncbi.nlm.nih.gov/pubmed/26301600?dopt=AbstractPlus
Concepts and Techniques in Genomics and Proteomics - 1st Edition
3.2 The viral genome. 3.3 Bacterial genomes. 3.4 Fungal genomes. 3.5 Worm genome: Caenorhabditis elegans ...https://www.elsevier.com/books/concepts-and-techniques-in-genomics-and-proteomics/saraswathy/978-1-907568-10-7
Plant Virology, Book by Roger Hull (Other) | chapters.indigo.ca
Viral Genome Expression. A. Structure of the Genome. B. Defining Functional ORFs. C. Recognizing Activities of Viral Genes. D. ... Chapter 6 Genome Organization. I. Introduction. II. General Properties of Plant Viral Genomes. A. Information Content. B. ... C. The Functions of Viral Gene Products. D. Non-coding Regions. III. Plant Viral Genome Organization. IV. Double-Stranded DNA ... Chapter 7 Expression of Viral Genomes. I. Introduction. II. Virus Entry and Uncoating. A. Virus Entry. B. Uncoating of TMV. C. ...https://www.chapters.indigo.ca/en-ca/books/plant-virology/9780080535999-item.html
A genome-to-genome analysis of associations between human genetic variation, HIV-1 sequence diversity, and viral control. |...
Alleles, Genome, Human, Genome, Viral, Genome-Wide Association Study, Histocompatibility Antigens Class I, HIV Infections, HIV- ... A genome-to-genome analysis of associations between human genetic variation, HIV-1 sequence diversity, and viral control.. ... A genome-to-genome analysis of associations between human genetic variation, HIV-1 sequence diversity, and viral control.. ... nature of viral variation; (2) association testing can be run without any clinical data. The proposed genome-to-genome approach ...https://actgnetwork.org/node/408555
Ingrid Daubechies, James B. Duke Professor of Mathematics and Professor of Electrical and Computer Engineering
Genome, Viral • Herpesviridae • Humans • Image Interpretation, Computer-Assisted • Image Processing, Computer-Assisted • ...http://fds.duke.edu/db/aas/math/ingrid
Bacterial Genetic Variation (complete) Flashcards by Eooooo m | Brainscape
Knowledge GenomeTM Brainscape Certified Browse over 1 million classes created by top students, professors, publishers, and ... Can be induced to enter lytic state --->> viral replication/production, cell lysis. - *Repressor protein* maintains lysogenic ... Play role in genome evolution - Inactivates genes into which they transpose. - OR turn on gene expression adjacent to the genes ... Certain virulence genes are on bacteriophages --- not a normal part of bacterial genome. - THEREFORE a virulence factor is only ...https://www.brainscape.com/flashcards/bacterial-genetic-variation-complete-3338979/packs/5070240
Strain-dependent effects of clinical echovirus 30 outbreak isolates at the blood-CSF barrier | Journal of Neuroinflammation |...
Complete genome sequencing revealed differences between the strains analyzed, but no explicit correlation with the observed ... Genome sequencing and phylogenetic analyses were performed to discriminate potential genetic differences among the outbreak ... Quantification of viral genome copies via qPCR. Quantification of viral genome copies was performed on total RNA extracted from ... of the viral genomes located within the cells, but a majority of viral genomes 72 ± 18% were still detected basolaterally (Fig ...https://jneuroinflammation.biomedcentral.com/articles/10.1186/s12974-018-1061-4
Functional implications of microbial and viral gut metagenome changes in early stage L-DOPA-naïve Parkinson's disease patients ...
The genome of Akkermansia muciniphila, a dedicated intestinal mucin degrader, and its use in exploring intestinal metagenomes. ... Viral Safeguard: The enteric virome protects against gut inflammation. Immunity. 2016;44(4):715-8.View ArticlePubMedGoogle ... Viral analyses. The gut bacteria harbor a diverse phageome and virome that may contribute to function and structure of the ... Functional implications of microbial and viral gut metagenome changes in early stage L-DOPA-naïve Parkinson's disease patients ...https://genomemedicine.biomedcentral.com/articles/10.1186/s13073-017-0428-y
Viral genome integration. Definition. Protein involved in DNA integration, a process that mediates the insertion of foreign ...https://www.uniprot.org/keywords/KW-0229
Cloning of the genomes of human cytomegalovirus strains Toledo, TownevarRIT3, and Towne long as BACs and site-directed...
The 230-kb human cytomegalovirus genome is among the largest of the known viruses. Experiments to determine the genetic ... Genome, Viral*. Humans. Mutagenesis, Site-Directed. Polymerase Chain Reaction / methods. Restriction Mapping. ... Cloning of the genomes of human cytomegalovirus strains Toledo, TownevarRIT3, and Towne long as BACs and site-directed ... The 230-kb human cytomegalovirus genome is among the largest of the known viruses. Experiments to determine the genetic ...http://www.biomedsearch.com/nih/Cloning-genomes-human-cytomegalovirus-strains/12667824.html
Identification of a novel bovine enterovirus possessing highly divergent amino acid sequences in capsid protein | BMC...
We named this strain as BEV AN12/Bos taurus/JPN/2014 (referred to as BEV-AN12). According to genome analysis, the genome length ... The complete genome sequences of BEV were genetically distant from other EVs and the VP1 coding region contained novel and ... although it clustered with Enterovirus F in trees based on sequences in the P2 and P3 genome region. We identified novel BEV ... of this virus is 7414 nucleotides excluding the poly (A) tail and its genome consists of a 5′UTR, open reading frame encoding a ...https://bmcmicrobiol.biomedcentral.com/articles/10.1186/s12866-016-0923-0
Statistical Applications in Genetics and Molecular Biology
Comparisons of classification methods for viral genomes and protein families using alignment-free vectorization. Huang, Hsin- ... Robustness of the linear mixed effects model to error distribution assumptions and the consequences for genome-wide association ... Sensitivity to prior specification in Bayesian genome-based prediction models by Lehermeier, Christina/ Wimmer, Valentin/ ...https://www.degruyter.com/view/j/sagmb.2018.17.issue-4/issue-files/sagmb.2018.17.issue-4.xml
Porcine circovirus type 2 (PCV2): genetic variation and newly emerging genotypes in China | Virology Journal | Full Text
... and one strain with a genome 1767 nt in length. Finding of two amino acids elongation of the ORF2-encoded Cap protein is ... and the genomes of these viruses were sequenced. The assembled sequences were used to define the genotypes of these strains; ... Cloning of the viral genome. To isolate PCV2 DNA, viral isolates were freeze-thawed three times and then centrifuged. The ... strains had a genome of 1766 nt, 14 (73.7%) strains had a genome of 1767 nt and two (10.5%) strains had a genome 1768 nt in ...https://virologyj.biomedcentral.com/articles/10.1186/1743-422X-7-273
Kay Faaberg : USDA ARS
ASM Conference on Viral Genome Replication. Poster No. 55A. p. 69. ... Role of the Viral Ovarian Domain Protease in PRRSV Pathogenesis Reimbursable Cooperative Agreement (R) ... Intervention Strategies to Control Endemic and New and Emerging Viral Diseases of Swine In-House Appropriated (D) ... Development of a genome copy specific RT qPCR assay for divergent strains of type II porcine reproductive and respiratory ...https://www.ars.usda.gov/people-locations/person/?person-id=44811
The Institute for Creation Research
Viral Genome Junk Is Bunk. Acts & Facts. 44 (4): 12. *Dr. Tomkins is Director of Life Sciences at the Institute for Creation ... and that external viral genomes were derived from human and animal ERVs only after God cursed the creation for man's sin. This ... Genome Biology and Evolution. 7 (4): 1082-1097.. * Chuong, E. B., N. C. Elde, and C. Feschotte. 2016. Regulatory evolution of ... Now a new study shows many other ERVs across the genome play key roles in controlling immune responses, another important ...http://www.icr.org/article/9253/
Summary | Biodefense in the Age of Synthetic Biology | The National Academies Press
Constraints on viral genome organization. Increased knowledge of viral genome organization and/or demonstration of ... Constraints on viral genome organization. Increased knowledge of viral genome organization and/or demonstration of ... Engineering complex viral traits. Increased knowledge of determinants of complex viral traits, as well as how to engineer ... Modifying the human genome. Means to engineer horizontal transfer. Increased knowledge of techniques to effectively alter the ...https://www.nap.edu/read/24890/chapter/2
Caulimoviridae - Wikipedia
Firstly, the viral genome enters the cytoplasm. The viral DNA forms supercoiled mini-chromosome structures upon entering the ... they do not require the integration of viral genome into the host's in order to replicate and for this reason their genome does ... Harper G, Hull R, Lockhart B, Olszewski N (2002). "Viral sequences integrated into plant genomes". Annu Rev Phytopathol. 40: ... It can either be used as a template for viral protein synthesis, or it can undergo reverse transcription by viral encoded ...https://en.wikipedia.org/wiki/Caulimoviridae
Genome polyprotein - Human parechovirus 1 (strain Harris) (HPeV-1)
VP3 form a closed capsid enclosing the viral positive strand RNA genome. Capsid proteins interact with host alpha-V/beta-3 ... In addition to its proteolytic activity, it binds to viral RNA, and thus influences viral genome replication. RNA and substrate ... br>,/br>These range from a single component such as Viral genomes to several components as in the case of eukaryotic ... Capsid proteins VP0, VP2, VP3 form a closed capsid enclosing the viral positive strand RNA genome. Capsid proteins interact ...http://www.uniprot.org/uniprot/Q66578
SERCA2a gene transfer improves electrocardiographic performance in aged mdx mice.
METHODS: 1 × 10(12) viral genome particles/mouse of adeno-associated virus serotype-9 (AAV-9) SERCA2a vector was delivered to ... Eight months later, we examined the AAV genome in the heart. The vector genome was detected in all mdx mice that received AAV-9 ... 1012 viral genome (vg) particles/mouse of AAV-9 SERCA2a vector to 12-m-old female mdx mice via a single bolus tail vein ... We observed AAV genome persistence and SERCA2a over-expression in the hearts of 20-m-old mdx mice that were treated at age of ...http://www.biomedsearch.com/nih/SERCA2a-gene-transfer-improves-electrocardiographic/21834967.html
UBP1 Gene - GeneCards | UBIP1 Protein | UBIP1 Antibody
viral genome replication. TAS. 8114710. Genes that share ontologies with UBP1: view ...http://www.genecards.org/cgi-bin/carddisp.pl?gene=UBP1