*  Genome Sequence of Human Rhinovirus A22, Strain Lancaster/2015 - Semantic Scholar
The assembled genome is 8.7% divergent from the HRV-A22 reference strain over its full length, and it is only the second full- ... length genome sequence for HRV-A22. The new strain is designated strain HRV-A22/Lancaster/2015. ... The genome of human rhinovirus A22 (HRV-A22) was assembled by deep sequencing RNA samples from nasopharyngeal swabs. ... Viral and bacterial infection in acute asthma and chronic obstructive pulmonary disease increases the risk of readmission.. * ...
  https://www.semanticscholar.org/paper/Genome-Sequence-of-Human-Rhinovirus-A22-Strain-Lan-Atkinson-Bishop/b01a4f22fd90ac27402ac4cb8f7550f10c61212d
*  An expanded taxonomy of hepatitis C virus genotype 6: Characterization of 22 new full-length viral genomes. - Oxford...
With these 22 new genomes, HCV-6 now has a diverse and extended taxonomic structure, comprised of 28 assigned subtypes (denoted ... 6a-6xe) and 27 unassigned lineages, all of which have been represented by full-length genomes. Our phylogenetic analyses also ... We characterized the full-length genomes of 22 hepatitis C virus genotype 6 (HCV-6) isolates: 10 from Vietnam (classified into ... Full-length genome, Genotype 6, HCV, Laos, Sequence, Animals, China, Genetic Variation, Genome, Viral, Genotype, Hepacivirus, ...
  https://www.neuroscience.ox.ac.uk/publications/504606
*  Matt Gethers/20.380 HIV Project/Design Pitch - OpenWetWare
Red blood cells are ideal for this application because they lack a genome and thus cannot support viral replication. To mediate ... Plan is to introduce a permanent viral sink to patients. *Rather than trying to inhibit a part of the viral lifecycle through a ... These manipulated red blood cells act as viral sinks to deplete the viral load. ... but incapable of supporting viral replication. These cells would then act as viral "sinks." If you put enough of these in the ...
  https://openwetware.org/wiki/Matt_Gethers/20.380_HIV_Project/Design_Pitch
*  Publications | Institute Of Tropical & Infectious Diseases(UNITID)
Analysis of both viral diversity and intersubtype recombination would benefit from the sequencing of entire viral genomes ... Subject ML415 was infected with a viral genome identified as entirely subtype D. Two subjects displayed HIV-1 genomes that were ... including recombinant genomes in circulating viral particles. Nairobi sex workers, who are exposed to a range of viral strains ... The results showed that five out of the nine tested samples returned positive for presences PPR viral genome. This study has ...
  http://unitid.uonbi.ac.ke/uon_publications/author/4139
*  Microbiology Society Journals | Comparative analysis of the full genome sequence of European bat lyssavirus type 1 and type 2...
The lengths of each complete viral genome for EBLV-1 and EBLV-2 were 11 966 and 11 930 base pairs, respectively, and follow the ... standard rhabdovirus genome organization of five viral proteins. Comparison with other lyssavirus sequences demonstrates ... The lengths of each complete viral genome for EBLV-1 and EBLV-2 were 11 966 and 11 930 base pairs, respectively, and follow the ... Auewarakul, P. ( 2005 ). Composition bias and genome polarity of RNA viruses. Virus Res 109, 33-37.[CrossRef] ...
  http://jgv.microbiologyresearch.org/content/journal/jgv/10.1099/vir.0.82692-0
*  Viral load change and sequential evolution of entire hepatitis C virus genome in Irish recipients of single source-contaminated...
Viral load change and sequential evolution of entire hepatitis C virus genome in Irish recipients of single source-contaminated ... Viral load change and sequential evolution of entire hepatitis C virus genome in Irish recipients of single source-contaminated ... To identify viral genomic elements responsible for the viral load, we investigated samples from a population of Irish women who ... Publication date & source: 2005-11, J Viral Hepat., 12(6):594-603.. In hepatitis C virus (HCV) infection, serum viral load is ...
  http://www.druglib.com/abstract/it/itakura-j_j-viral-hepat_20051100.html
*  gb4gv: A genome browser for geminivirus [PeerJ Preprints]
Currently, NCBI Viral Genome website is a popular repository of viral genomes that conveniently provides researchers a ... However, unlike the genome of living organisms, viral genomes most often maintain peculiar characteristics that fit into no ... By imposing a unified annotation scheme on the myriad of viral genomes may downplay their hallmark features. For example, ... But, the two bipartite genomes are kept separately in NCBI with no explicit association in linking them. Thus, our goal is to ...
  https://peerj.com/preprints/2705/
*  Robust HPV-18 production in organotypic cultures of primary human keratinocytes. - NextBio article
DNA, Viral Genome, Viral Human papillomavirus 18 Humans Keratinocytes Mice Plasmids Real-Time Polymerase Chain Reaction ...
  http://www.nextbio.com/b/search/article.nb?id=25348300
*  The Tree of Life: Crosspost from http://microBE.net: New, massive volumes on #metagenomics coming out soon
Viral Genomes.. *2. Viral metagenomics (Shannon Williamson).. *3. Methods in Viral Metagenomics (Thurber). ... Genome analysis of Streptococcus agalactiae: Implication for the microbial "pan-genome" (Rino Rappuoli). ... Complete genome of an uncultured endowsymbiont coupling nitrogen fixation to cellulolysis with protest cells in termite gut ( ... Functional Viral Metagenomics and the Development of New Enzymes for DNA and RNA Amplification and Sequencing (Thomas ...
  https://phylogenomics.blogspot.com/2011/06/crosspost-from-httpmicrobenet-new.html
*  August 24th, 2011 - Volume 25 - Issue 13 : AIDS
Virus-inhibitory peptide: a natural HIV entry inhibitor in search for a formal target in the viral genome. QuiƱones-Mateu, ... Development and validation of systems for rational use of viral load testing in adults receiving first-line ART in sub-Saharan ...
  http://journals.lww.com/aidsonline/toc/2011/08240
*  Lecture 12 - HPV Flashcards by Eleanor Nicklason | Brainscape
At which point is the viral genome integrated into the cell? It is never integrated, it 'attaches' to the host genome so that ... 1. HPV randomly integrated into the host genome. 2. Capsid proteins lost. 3. IF E2 is lost, we now have no down regulation of ... 2. E proteins produced, genome is episome. 3. Cell replication. 4. Episome copied --> multiple copies in each cell. 5. Late ...
  https://www.brainscape.com/flashcards/lecture-12-hpv-1114542/packs/1969152
*  Discovery of endogenous viruses | Philosophical Transactions of the Royal Society B: Biological Sciences
With complete host genomes available for analysis, we can now see the great extent of viral invasion into the genomes of ... the full replication cycle occurs via non-integrated circular viral genomes, whereas viral integration into host DNA usually ... 2012 An endogenous foamy-like viral element in the Coelacanth genome. PLoS Pathog. 8, e1002790. (doi:10.1371/journal.ppat. ... Nowadays, the notion that viral genetic sequences are present in host genomes is commonplace [1,2]. Conversely, many host genes ...
  http://rstb.royalsocietypublishing.org/content/368/1626/20120494
*  CTBP2 (human)
... viral genome replication; white fat cell differentiation ...
  https://www.phosphosite.org/proteinAction.action?id=8921
*  Transcriptome Sequencing (RNA-Seq) | SpringerLink
Single-molecule DNA sequencing of a viral genome. Science. 2008;320:106-9.PubMedGoogle Scholar ... The pediatric cancer genome project. Nat Genet. 2012;44(6):619-22.PubMedPubMedCentralGoogle Scholar ... Accurate whole human genome sequencing using reversible terminator chemistry. Nature. 2008;456:53-9.PubMedPubMedCentralGoogle ... What are we learning from the cancer genome? Nat Rev Clin Oncol. 2012;9(11):621-30 (Review on NGS in cancer).PubMedGoogle ...
  https://link.springer.com/chapter/10.1007/978-1-4939-0727-4_3
*  Plant virus - Wikipedia
Some viral families, such as the Bromoviridae instead opt to have multipartite genomes, genomes split between multiple viral ... In the presence of the viral genome, the discs are stacked, then a tube is created with room for the nucleic acid genome in the ... The structure of a virus is given by its coat of proteins, which surround the viral genome. Assembly of viral particles takes ... The resulting capped leader RNA is used to prime transcription on the viral genome. However some plant viruses do not use cap, ...
  https://en.wikipedia.org/wiki/Plant_virus
*  Microbiology - 3 - Viruses Flashcards by Jasmine Santos | Brainscape
viral genome may be in cytoplasm or host genome. *replication takes place ONLY when triggered *HSV & cold sores ... viral mRNA --, translated in host cytoplasm --, viral proteins *usually MONOCISTRONIC *single coding region ... Knowledge GenomeTM Brainscape Certified Browse over 1 million classes created by top students, professors, publishers, and ... cell remains alive & viral particles released slowly over time. *infected carrier can by asymtomatic yet infectious *hepatitis ...
  https://www.brainscape.com/flashcards/microbiology-3-viruses-6709666/packs/10663169
*  Ppia - Peptidyl-prolyl cis-trans isomerase A - Mus musculus (Mouse) - Ppia gene & protein
br>,/br>These range from a single component such as Viral genomes to several components as in the case of eukaryotic ... Genome annotation databases. Ensembl eukaryotic genome annotation project. More...Ensembli. ENSMUST00000132846; ... Genome annotation databases. Ensembl eukaryotic genome annotation project. More...Ensembli. ENSMUST00000132846; ... They may also represent different stages in a genome project and include components such as contigs, scaffolds or Whole Genome ...
  http://www.uniprot.org/uniprot/P17742
*  APOBEC3C Gene - GeneCards | ABC3C Protein | ABC3C Antibody
viral process. IEA. --. GO:0045071. negative regulation of viral genome replication. IDA. 21632763. ... The resultant detrimental levels of mutations in the proviral genome, along with a deamination-independent mechanism that works ... The resultant detrimental levels of mutations in the proviral genome, along with a deamination-independent mechanism that works ... it can induce the conversion of cytosine to uracil in the minus-sense single-strand viral DNA, leading to G-to-A hypermutations ...
  http://www.genecards.org/cgi-bin/carddisp.pl?id_type=entrezgene&id=27350
*  BIO 114
Viral Genome and Bioinformatics (0, 4). 2 credits.. A computer-based laboratory experience, designed for students completing ... Students will learn to identify genes in a viral genome, compare the predicted proteins with known proteins in databases, ... Viral Discovery (0, 4). 2 credits.. An exploratory laboratory experience, designed for incoming freshmen. Students will learn ... An advanced biology course designed for students to learn about the structure and function of genomes, to develop facility in ...
  http://www.jmu.edu/catalog/15/courses/BIO.shtml
*  ILF3 Gene - GeneCards | ILF3 Protein | ILF3 Antibody
Human Genome Epidemiology Navigator (HuGE) ATLAS of Genetics and Cytogenetics in Oncology and Haematology ... Upon viral infection, ILF3 accumulates in the cytoplasm and participates in the innate antiviral response (PubMed:21123651). ... Upon viral infection, ILF3 accumulates in the cytoplasm and participates in the innate antiviral response (PubMed:21123651). ... In turn, unbound ILF3 molecules are able to interact with and thus inhibit viral mRNAs (PubMed:21123651, PubMed:28625552). * ...
  http://www.genecards.org/cgi-bin/carddisp.pl?gene=ILF3
*  Virus | Encyclopedia.com
On invasion of a susceptible cell the virion is disassembled to release the viral genome . Once the viral genome is released, ... HBV is able to integrate its genome into the host cell's genome. When this integration occurs, the viral genome is replicated ... This combination host-viral genome is called a prophage. Most of the viral genes within the prophage are repressed by a special ... This combination host-viral genome is called a prophage. Most of the viral genes within the prophage are repressed by a special ...
  https://www.encyclopedia.com/plants-and-animals/microbes-algae-and-fungi/moneran-and-protistan/virus
*  Tissue expression of CXCR6 - Summary - The Human Protein Atlas
GO:0019079 [viral genome replication]. GO:0019958 [C-X-C chemokine binding]. GO:0070098 [chemokine-mediated signaling pathway] ...
  http://www.proteinatlas.org/ENSG00000172215-CXCR6/tissue/vulva%252Fanal+skin
*  Expression of VCP in cancer - Summary - The Human Protein Atlas
GO:0019079 [viral genome replication]. GO:0019903 [protein phosphatase binding]. GO:0019904 [protein domain specific binding]. ... generated by the The Cancer Genome Atlas (TCGA). RNA cancer tissue category is calculated based on mRNA expression levels ... RNA category is calculated separately for The Cancer Genome Atlas (TCGA) data from cancer tissues and internally generated ... RNA expression overview shows RNA-seq data from The Cancer Genome Atlas (TCGA). ...
  http://www.proteinatlas.org/ENSG00000165280-VCP/pathology