*  A novel virus genome discovered in an extreme environment suggests recombination between unrelated groups of RNA and DNA...
... for genome replication proteins) move relatively freely in and out of these viral genomes. In other words, the movement of ... This unique viral genome carries implications for theories of virus emergence and evolution, as no mechanism for interviral RNA ... The putative viral genome (BSL-RDHV) encodes four proteins, two of which share sequence similarity with proteins from ... Diemer and Stedman report on characterization of a putative viral genome, which has been obtained in the course of a ...
  https://biologydirect.biomedcentral.com/articles/10.1186/1745-6150-7-13
*  Landmarks of the HIV genome
... shows a graphical map of the genes and proteins of HIV-1, including the breakpoints on reference ... VIF Viral infectivity factor, a basic protein typically 23 kD. Promotes the infectivity but not the production of viral ... STRUCTURAL PROTEINS/VIRAL ENZYMES The products of gag, pol, and env genes, which are essential components of the retroviral ... VPU Vpu (viral protein U) is unique to HIV-1, SIVcpz (the closest SIV relative of HIV-1), SIV-GSN, SIV-MUS, SIV-MON and SIV-DEN ...
  https://www.hiv.lanl.gov/content/sequence/HIV/MAP/landmark.html
*  Complete Genome Viral Phylogenies Suggests the Concerted Evolution of Regulatory Cores and Accessory Satellites
A single viral genome can be thought of as a mutualistic network, with the core genes acting as an effective host and the ... For all four viral families we constructed DNA-dependent DNA polymerase-based (DdDp) phylogenies and in addition, whole genome ... The congruence of the genome and polymerase trees suggests that a large set of viral genes, including polymerase, derive from a ... To address the concerted evolution of viral genes, we compared genomic evolution across four distinct, extant viral families. ...
  http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0003500
*  Viral Genome Junk Hits the Trash | The Institute for Creation Research
Viral Genome Junk Hits the Trash by Jeffrey P. Tomkins, Ph.D. * Evidence for Creation › Evidence from Science › Evidence from ... Viral Genome Junk Is Bunk. Acts & Facts. 44 (4): 12. *Dr. Tomkins is Director of Life Sciences at the Institute for Creation ... and that external viral genomes were derived from human and animal ERVs only after God cursed the creation for man's sin. This ... Genome Biology and Evolution. 7 (4): 1082-1097.. * Chuong, E. B., N. C. Elde, and C. Feschotte. 2016. Regulatory evolution of ...
  http://www.icr.org/article/9253/282/
*  Recombination into the Viral Genome - OpenWetWare
Now that we have created synthetic Gene 68, we need to combine that synthetic gene with the rest of the phage genome. We will ... Today we will introduce the native phage genome and synthetic gene 68 into the bacterial cells and then plate those cells onto ... If it is infectious, the semi-synthetic phage genome will burst the initial host bacterial cell, causing it to rupture and ... The method that we will use to introduce the phage genome and synthetic gene into bacteria is called electroporation; rather ...
  https://openwetware.org/wiki/Recombination_into_the_Viral_Genome
*  Max-Planck-Institut für Informatik: Analysis of Viral Genomes Using Next-generation Sequencing
News Spotlights Bioinformatics Analysis of Viral Genomes Using Next-generation Sequencing. Analysis of Viral Genomes Using Next ... Standardizing viral sequence analysis with Virana The situation is further complicated by the fact that viral genomes differ ... Analysis of Viral Genomes Using Next-generation Sequencing. Research on viral infections is heavily dependent on available ... used to analyze the complex interaction of the hepatitis B virus with the host's immune system on the basis of the viral genome ...
  https://www.mpi-inf.mpg.de/news/spotlights/bioinformatics/analysis-of-viral-genomes-using-next-generation-sequencing/
*  Early growth response-1 facilitates enterovirus 71 replication by direct binding to the viral genome RNA. | Sigma-Aldrich
Early growth response-1 facilitates enterovirus 71 replication by direct binding to the viral genome RNA.. [Yu Song, Xin Cheng ... Our results reveal an important new role of EGR1 in viral infection, provide new insight into the novel mechanism underlying ... Unfortunately, there is currently no effective treatment for EV71 infection due to the lack of understanding of viral ... Moreover, EGR1 protein co-localizes with EV71 RNA in the cytoplasm of infected cells to facilitate viral replication. ...
  https://www.sigmaaldrich.com/catalog/papers/25724735
*  Pathogens | Free Full-Text | Presence of Viral Genome in Urine and Development of Hematuria and Pathological Changes in...
DENV genome was detected in 75% (15/20) of marmosets after primary DENV infection. No DENV genome was detected in urine samples ... Levels of DENV genome were determined in 228 urine samples from 20 primary DENV-inoculated marmosets and in 56 urine samples ... Presence of DENV genome in urine samples and pathological changes in kidneys were examined in the present study. ... In comparison to detection of viral genome in urine samples, DENV genome was detected on days 2-7 in serum samples (Table 2). ...
  http://www.mdpi.com/2076-0817/2/2/357/htm
*  Horizontal transfer of a non-autonomous Helitron among insect and viral genomes | BMC Genomics | Full Text
... but these viral genome segments also exist as free circular dsDNAs that become enclosed into transmissible viral particles [47, ... In conjunction with prior research outlined above, the comparative genomic data in this study indicate that viral genomes ... Abundant and species-specific DINE-1 transposable elements in 12 Drosophila genomes. Genome Biol. 2008;9:R39.View ArticlePubMed ... Specifically, the genomes of PDVs are segmented and integrated into the genomes of their primary hosts (parasitoid wasps; ...
  https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-015-1318-6
*  ASMscience | Viral Genomes: a Simulation of Viral Protein and Nucleic Acid Syntheses
... simulating viral uncoating in the host cell) and decide how host and/or viral enzymes will convert the genome into viral ... an abbreviated viral genome). The students break open the cups ( ... Templates for photocopying the genomes, sample worksheets, and ... proteins and new genomes. The sequences provided describe a double-stranded DNA virus, single-stranded RNA viruses (+ or - ... a Simulation of Viral Protein and Nucleic Acid Syntheses Viral Genomes: a Simulation of Viral Protein and Nucleic Acid ...
  http://www.asmscience.org/content/education/curriculum/curriculum.74
*  Characterization of the Purified Recombinant Adenovirus for Viral Genome Structure by Restriction Enzyme Digestions
... (Protocol ... Protocol 4: Characterization of the Purified Recombinant Adenovirus for Viral Genome Structure by Restriction Enzyme Digestions ... Protocol 4: Whole Genome: Manual Library Preparation *Protocol 5: Whole Genome: Automated, Nonindexed Library Preparation * ... Panel: Introducing Genes into Mammalian Cells: Viral Vectors1209 *Panel: Factors to Consider When Choosing a Viral Vector1211 * ...
  http://molecularcloning.com/index.php?prt=181
*  Microbiology Society Journals | Molecular characterization of the plant virus genus Ourmiavirus and evidence of inter-kingdom...
We cloned and sequenced their RNA genomes. The sizes of the three genomic RNAs of OuMV, the type member of the genus, were 2814 ... The putative RdRps of ourmiaviruses are distantly related to known viral RdRps, with the closest similarity and phylogenetic ... f Molecular characterization of the plant virus genus Ourmiavirus and evidence of inter-kingdom reassortment of viral genome ... Molecular characterization of the plant virus genus Ourmiavirus and evidence of inter-kingdom reassortment of viral genome ...
  http://jgv.microbiologyresearch.org/content/journal/jgv/10.1099/vir.0.013086-0
*  The influence of the human genome on chronic viral hepatitis outcome
Em futuro próximo, a análise do genoma humano será capaz de elucidar o curso natural de uma hepatite viral, bem como a sua ... Os mecanismos que determinam o clearance ou a persistência da infecção viral nas hepatites virais crônicas não estão ainda bem ...
  http://www.scielo.br/scielo.php?script=sci_abstract&pid=S0036-46652004000300001&lng=en&nrm=iso&tlng=pt
*  BIOL 230 Lecture Guide - Production of Viral mRNA from a ss plus RNA Viral Genome
10E: Replication of a Single-Stranded Plus RNA Viral Genome and Production of Viral mRNA. To replicate the viral genome, RNA- ... RNA-dependent RNA polymerase enzymes then copy the (-) RNA strands producing ss (+) RNA viral genome. ... To produce viral mRNA molecules. RNA-dependent RNA polymerase enzymes copy the (-) RNA strand into (+) viral mRNA. The (+) ... viral mRNA can then be transtated into viral proteins by host cell ribosomes. ...
  http://faculty.ccbcmd.edu/courses/bio141/lecguide/unit4/viruses/ssplusRNA_lc.html
*  Complete viral RNA genome sequencing of ultra-low copy samples by sequence-independent amplification
... of a viral genome.. Sequence-independent methods (21-25) are attractive for sequencing viral genomes in that they do not rely ... methods coupled with our de novo assembly of viral genomes provides a new methodology for sequencing viral genomes from many ... RSV and WNV samples with as little as 100 viral RNA genomes. Previous studies using Ovation RNA-Seq with HIV viral RNA used ex ... by aligning reads to viral and host reference genomes. For HIV clone and clinical samples, the reference genomes used were the ...
  http://pubmedcentralcanada.ca/pmcc/articles/PMC3592391/?lang=en-ca
*  SEQanswers - View Single Post - Viral genome sequencing
But in case of these two kit , a big problem will face me that the host RNA will interfer with the viral RNA and this will make ... It is marketed as the automated version of the Ion Total RNA-Seq Kit v2, which is compatible with viral transcriptomes.. But ...
  http://seqanswers.com/forums/showpost.php?p=200747&postcount=3
*  Bioinformatics of viral genomes - BIDD - TechyLib
"η παρουσίαση με τίτλο Bioinformatics of viral genomes - BIDD σχετίζετε με Βιοτεχνολογία ... Viral genome list:. 9. Resource of Viral Genomes. Viral genome list:. 10. Bioinformatics of Viral Genomes. Viral name link:. ... Genome database at NCBI. •. Viral genomes. -. SARS coronavirus genome as an example. •. Finding proteins from a genome. •. ... List of viral genomes: (1,927 entries in Jan 2006, 1,461 in Jan 2005). 7. Resource of Viral Genomes. NCBI Genome Database. http ...
  https://www.techylib.com/el/view/weinerthreeforks/bioinformatics_of_viral_genomes_bidd
*  The detection of viral genomes by polymerase chain reaction in the myocardium of pediatric patients with advanced HIV disease |...
The detection of viral genomes by polymerase chain reaction in the myocardium of pediatric patients with advanced HIV disease ... The detection of viral genomes by polymerase chain reaction in the myocardium of pediatric patients with advanced HIV disease ... The detection of viral genomes by polymerase chain reaction in the myocardium of pediatric patients with advanced HIV disease ... The detection of viral genomes by polymerase chain reaction in the myocardium of pediatric patients with advanced HIV disease ...
  http://www.onlinejacc.org/content/34/3/857
*  Veritas: "Viral Genome Junk Hits the Trash" - More Trash from our Jeff
... and that external viral genomes were derived from human and animal ERVs only after God cursed the creation for man's sin. This ... Genome Biology and Evolution. 7 (4): 1082-1097.. 3. Chuong, E. B., N. C. Elde, and C. Feschotte. 2016. Regulatory evolution of ... Now if you drop a promoter anywhere in the genome, it has a good chance of promoting the transcription of some native DNA. ... Obviously a mammal would get sick and have difficulty surviving without ERVs regulating their genome.. More of the same. That " ...
  http://barryhisblog.blogspot.fr/p/viral-genome-junk-hits-trash.html
*  Bioinformatics Tools: Reconstruction of bacterial and viral genomes from multiple metagenomes
A total 1156 bacterial genomes belonging to 219 bacterial families and, 279 viral genomes belonging to 84 viral families could ... More than 80% complete draft genome sequences could be reconstructed for a total of 126 bacterial and 11 viral genomes. ... unix Upper case urea url Velvet Venn diagram venny VER viral genome web resources on tuberculosis weight WGS whole genome ... purification Q-SiteFinder QIIME Ray RDP classifier reads reconstruction of bactieral genome reconstruction of viral genome ...
  http://bioinformatictools.blogspot.com/2016/05/reconstruction-of-bacterial-and-viral.html
*  Role of Adenovirus Core Proteins in Innate Signaling and Viral Genome Packaging - Patrick Hearing
... dsDNA genomes, such as the adenoviruses (Ad) and herpesviruses, encounter a number of host cell responses that may severely ... Role of Adenovirus Core Proteins in Innate Signaling and Viral Genome Packaging Hearing, Patrick State University New York ... As protein VII is released from the Ad genome during the early phase of viral infection, Ad inhibits a DDR by alternative ... Core protein VII is tightly associated with the viral genome within the Ad virus particle, the capsid. It is not clear how ...
  http://grantome.com/grant/NIH/R21-AI102577-02
*  Control of hepatitis C virus genome replication by viral factors and mediators of host intrinsic immunity - Enlighten: Theses
Domingues, Patricia da Silva (2013) Control of hepatitis C virus genome replication by viral factors and mediators of host ... Control of hepatitis C virus genome replication by viral factors and mediators of host intrinsic immunity ...
  http://theses.gla.ac.uk/4933/
*  Base-By-Base version 2: single nucleotide-level analysis of whole viral genome alignments | Microbial Informatics and...
Upton C, Hogg D, Perrin D, Boone M, Harris NL: Viral genome organizer: a system for analyzing complete viral genomes. Virus Res ... Multiple Sequence AlignmentViral GenomeMultiple Sequence Alignment ToolBench ScientistPoxvirus Genome ... Brodie R, Smith AJ, Roper RL, Tcherepanov V, Upton C: Base-By-Base: single nucleotide-level analysis of whole viral genome ... Mapping of RNA sequencing data to VACV-WR genome in BBB-v2. (a) Upper panel shows genome sequence and 3-frame translation. BBB- ...
  https://microbialinformaticsj.biomedcentral.com/articles/10.1186/2042-5783-1-2
*  An expanded taxonomy of hepatitis C virus genotype 6: Characterization of 22 new full-length viral genomes. - Oxford...
With these 22 new genomes, HCV-6 now has a diverse and extended taxonomic structure, comprised of 28 assigned subtypes (denoted ... 6a-6xe) and 27 unassigned lineages, all of which have been represented by full-length genomes. Our phylogenetic analyses also ... We characterized the full-length genomes of 22 hepatitis C virus genotype 6 (HCV-6) isolates: 10 from Vietnam (classified into ... Full-length genome, Genotype 6, HCV, Laos, Sequence, Animals, China, Genetic Variation, Genome, Viral, Genotype, Hepacivirus, ...
  https://www.neuroscience.ox.ac.uk/publications/504606