*  Haplotag: Software for Haplotype-Based Genotyping-by-Sequencing Analysis | G3: Genes | Genomes | Genetics
Haplotag: Software for Haplotype-Based Genotyping-by-Sequencing Analysis Message Subject (Your Name) has forwarded a page to ... you from G3: Genes , Genomes , Genetics Message Body (Your Name) thought you would be interested in this article in G3: Genes ... Haplotag: Software for Haplotype-Based Genotyping-by-Sequencing Analysis. Nicholas A. Tinker, Wubishet A. Bekele and Jiro ... Thank you for sharing this G3: Genes , Genomes , Genetics article.. NOTE: We request your email address only to inform the ...
  http://www.g3journal.org/content/6/4/857.figures-only
*  Frontiers | Genome-wide analysis of the CaHsp20 gene family in pepper: comprehensive sequence and expression profile analysis...
... and then their gene structure, genome location, gene duplication, phylogenetic relationship and interaction network were also ... and then their gene structure, genome location, gene duplication, phylogenetic relationship and interaction network were also ... In this study, a total of 35 putative pepper Hsp20 genes (CaHsp20s) were identified and renamed on the basis of their molecular ... In this study, a total of 35 putative pepper Hsp20 genes (CaHsp20s) were identified and renamed on the basis of their molecular ...
  https://www.frontiersin.org/articles/10.3389/fpls.2015.00806/full
*  Genes | Free Full-Text | Genome Sequence of Azospirillum brasilense CBG497 and Comparative Analyses of Azospirillum Core and...
Comparative genomic analyses were performed on this new genome and three other genomes (A. brasilense Sp245, A. lipoferum 4B ... The non-ancestral part of the core genome is enriched in genes involved in signal transduction, in transport and in metabolism ... were recently sequenced and published. In this study, an additional genome of an A. brasilense strain, isolated from maize ... of the total encoded proteins within a genome. It is mainly chromosomally-encoded and contains 74% of genes of ancestral origin ...
  http://www.mdpi.com/2073-4425/3/4/576/notes
*  Scanning the Effects of Ethyl Methanesulfonate on the Whole Genome of Lotus japonicus Using Second-Generation Sequencing...
In the TLLING analysis, a number of interesting genes with known sequences were selected for the identification of base changes ... of gene space is located in the genome sequence (Sato et al. 2008). The genome sequences of the chloroplast (150,519 bp) and ... for sequencing to screen EMS effects on their genome sequences and compare them with the resequenced WT MG-20 genome. In short ... SNP analysis. The resequenced WT genome was used for comparison to identify variants or base changes in the AS and AM genome ...
  http://www.g3journal.org/content/5/4/559
*  Complete nucleotide sequence, genomic organization, and promoter analysis of the murine survival motor neuron gene (Smn),...
... and promoter analysis of the murine survival motor neuron gene (Smn), Mammalian Genome" on DeepDyve, the largest online rental ... Complete nucleotide sequence, genomic organization, and promoter analysis of the murine survival motor neuron gene (Smn). ... Complete nucleotide sequence, genomic organization, and promoter analysis of the murine survival motor neuron gene (Smn). ... 1999 Complete nucleotide sequence, genomic organization, and promoter analysis of the murine survival motor neuron gene (Smn) ...
  https://www.deepdyve.com/lp/springer_journal/complete-nucleotide-sequence-genomic-organization-and-promoter-0i8d80QA4p
*  Genetic effects on gene expression across human tissues. | Genome Sequencing Program Analysis Centers
The Genome Sequencing Project Analysis Centers are funded by. the National Human Genome Research Institute. ... GTEx Consortium, Laboratory, Data Analysis &Coordinating Center (LDACC)-Analysis Working Group, Statistical Methods groups- ... Genome Browser Data Integration &Visualization-EBI, Genome Browser Data Integration &Visualization-UCSC Genomics Institute, ... Genetic effects on gene expression across human tissues.. Error message. *Notice: Array to string conversion in theme_biblio_ ...
  http://gspac.rutgers.edu/genetic-effects-gene-expression-across-human-tissues
*  H25K Human Genome Microarrays - Microarray Gene Chip Bead Array Human Genome Sequence Genome Expression Analysis
... allowing streamlined data analysis and mining. This all-purpose human genome chip enables a host of scientific applications. ... Our revolutionary one spot-one gene design utilizes the most advanced bioinformatics, contact printing, and surface chemistry ... Arrayit Human Genome Microarrays contain 26,304 long oligonucleotides specific for 25,509 fully annotated human genes. ... ArrayIt Human Genome Microarrays contain 26,304 long oligonucleotides specific for 25,509 fully annotated human genes. Our ...
  http://shop.arrayit.com/human_genome_microarray.aspx
*  H25K Human Genome Expression Services - Microarray Gene Chip Bead Array Human Genome Sequence Genome Expression Analysis
... our H25K Whole Human Genome Chips and complete sample to gene list services for total RNA sample pairs including RNA analysis, ... and a full report with gene list and fold activation or repression for each differentially expressed gene in the RNA sample ... RNA amplification, cDNA labeling, cDNA analysis, two-color H25K hybridization, H25K processing, H25K scanning, data ... Arrayit offers the market's most advanced and comprehensive human genome expression services available using ...
  http://shop.arrayit.com/gene_expression_services.aspx
*  Genome Informatics Workshop IV
GIW93I07] James W. Fickett: "Eukaryotic Gene Identification Algorithms" [GIW93I08] Phil Green: "Genome Sequence Analysis: ... Oral Session - Sequence Analysis. [GIW93O13] Osamu Gotoh: "Extraction of Conserved or Variable Regions from a Multiple Sequence ... An Integrated Data Management and Analysis Tool for Genome Sequencing Projects" [GIW93W07] Atsushi Ogiwara, Ikuo Uchiyama, ... "Sequence Analysis of Zinc Finger DNA-Binding Protein" [GIW93P06] Kazuhiro Iida, Hiroshi Mamitsuka: "Protein Sequence Motif ...
  http://www.jsbi.org/pdfs/journal1/GIW93/GIW93.html
*  Primer walking - Wikipedia
ISBN 0-19-963718-0. Sterky, Fredrik; Lundeberg, Joakim (2000). "Sequence analysis of genes and genomes" (PDF). Journal of ... The term "chromosome walking" is used instead when the sequence is known but there is no clone of a gene. For example, the gene ... The DNA of interest may be a plasmid insert, a PCR product or a fragment representing a gap when sequencing a genome. The term ... The end of the sequenced strand is used as a primer for the next part of the long DNA sequence, hence the term "walking". The ...
  https://en.wikipedia.org/wiki/Primer_walking
*  Marine Drugs | Free Full-Text | Subtilomycin: A New Lantibiotic from Bacillus subtilis Strain MMA7 Isolated from the Marine...
... including protein-coding genes for LanB-like dehydratase and LanC-like cyclase modification enzymes, characteristic of the ... The proposed biosynthetic cluster is composed of six genes, ... Genome Sequencing of B. subtilis MMA7 and Sequence Analysis of ... Multiple Sequence Alignment version 2.0.11, [34]) and sequence analysis processed with GeneDoc (Multiple sequence Alignment ... Multiple Sequence Alignment version 2.0.11, [34]) and sequence analysis processed with GeneDoc (Multiple sequence Alignment ...
  http://www.mdpi.com/1660-3397/11/6/1878/htm
*  Similar papers for Pathway redundancy and protein essentiality revealed in the Saccharomyces cerevisiae interaction networks -...
Our analysis of models and pivots sheds light on the organization of the cellular machinery as well as on the roles of ... Model genes tend to have short mRNA half-lives and many phosphorylation sites, suggesting that their stringent regulation is ... Applying these tools on a large-scale Saccharomyces cerevisiae data set, our analysis reveals 140 between-pathway models that ... Towards the identification of essential genes using targeted genome sequencing and comparative analysis. *Adam M Gustafson, ...
  https://www.semanticscholar.org/paper/Pathway-redundancy-and-protein-essentiality-reveal-Ulitsky-Shamir/324acc07c0c208544170bb744f1e78e8c6068aa6?tab=relatedPapers
*  Member
De novo 454 sequencing of barcoded BAC pools for comprehensive gene survey and genome analysis in the complex genome of barley ... Comparative analysis of sequence features involved in the recognition of tandem splice sites Authors: Ralf Bortfeldt, Stefanie ... Transcriptome analysis of the sex pheromone gland of the noctuid moth Heliothis virescens Authors: Heiko Vogel, Andrew J Heidel ... Comparative gene expression in toxic versus non-toxic strains of the marine dinoflagellate Alexandrium minutum Authors: Ines ...
  https://www.biomedcentral.com/about/institutional-support/membership/1600006942/1600006942?searchType=publisherSearch&sort=PubDate&query=email%3A
*  JoVE | Peer Reviewed Scientific Video Journal - Methods and Protocols
mRNA-Seq even opens the gate for gene expression analysis of non-sequenced genomes. mRNA-Seq offers high sensitivity, a large ... whole genome amplification, flow cytometry, viral ecology, virion, genome analysis, DNA, PCR, sequencing ... Gene-prediction analysis produced a total of 19,601 northern pike-specific gene models. The first-generation linkage map ... Illumina's genome analyzer performs sequencing of a large number (, 107) of relatively short sequence reads (, 150 bp).The " ...
  https://www.jove.com/visualize/abstract/25069045/the-genome-linkage-map-northern-pike-esox-lucius-conserved-synteny
*  JoVE | Peer Reviewed Scientific Video Journal - Methods and Protocols
mRNA-Seq even opens the gate for gene expression analysis of non-sequenced genomes. mRNA-Seq offers high sensitivity, a large ... gDNA Enrichment by a Transposase-based Technology for NGS Analysis of the Whole Sequence of BRCA1, BRCA2, and 9 Genes Involved ... Illumina's genome analyzer performs sequencing of a large number (, 107) of relatively short sequence reads (, 150 bp).The " ... The advent of next-generation sequencing has tremendously simplified and increased the sequencing depth for 16S rRNA gene ...
  https://www.jove.com/visualize/abstract/23826166/evaluating-impact-sequencing-depth-on-transcriptome-profiling-human
*  JoVE | Peer Reviewed Scientific Video Journal - Methods and Protocols
mRNA-Seq even opens the gate for gene expression analysis of non-sequenced genomes. mRNA-Seq offers high sensitivity, a large ... Illumina's genome analyzer performs sequencing of a large number (, 107) of relatively short sequence reads (, 150 bp).The " ... In this protocol, annotation of plant gene function using combined co-expression gene analysis, metabolomics and informatics is ... evolutionary analysis, and re-sequencing of individual genomes from natural populations7,8. Here, we present innovative ...
  https://www.jove.com/visualize/abstract/22514716/characterization-common-carp-transcriptome-sequencing-de-novo
*  JoVE | Peer Reviewed Scientific Video Journal - Methods and Protocols
mRNA-Seq even opens the gate for gene expression analysis of non-sequenced genomes. mRNA-Seq offers high sensitivity, a large ... gDNA Enrichment by a Transposase-based Technology for NGS Analysis of the Whole Sequence of BRCA1, BRCA2, and 9 Genes Involved ... "Next-generation" genome sequencing technologies provide 1-2 orders of magnitude increase in the amount of sequence that can be ... Illumina's genome analyzer performs sequencing of a large number (, 107) of relatively short sequence reads (, 150 bp).The " ...
  https://www.jove.com/visualize/abstract/20386591/increased-throughput-parallelization-library-preparation-for-massive
*  Lynn Margulis - Wikipedia
Margulis, Lynn (2009). "Genome acquisition in horizontal gene transfer: symbiogenesis and macromolecular sequence analysis". In ... Barlow, Connie (1992). From Gaia to Selfish Genes: Selected Writings in the Life Sciences (1st MIT Press paperback ed.). ... Margulis, Lynn, and Dorion Sagan (2002). Acquiring Genomes: A Theory of the Origins of Species, Perseus Books Group, ISBN 0-465 ... Gogarten, Maria Boekels; Gogarten, Johann Peter; Olendzenski, Lorraine C. Horizontal Gene Transfer:Genomes in Flux. 532. Humana ...
  https://en.m.wikipedia.org/wiki/Lynn_Margulis
*  Teesside University - Undergraduate study - Biological Sciences (with Foundation Year), BSc (Hons)
The new age of molecular biology is underpinned by gene and genome sequencing, sequence analysis and sequence manipulation. You ... control of gene expression, nucleic acid analysis through agarose gels and sequencing. ... These workshops help you decide on the design and analysis of the data associated with your project. The module is assessed by ... are introduced to the principles of sequence analysis and how these techniques have revolutionised all areas of molecular ...
  http://www.tees.ac.uk/undergraduate_courses/Life_&_Physical_Sciences/BSc_
*  Using the NONCODE Database Resource - Current Protocols
... lncRNA genes), and thus NONCODE is essential to modern biological and medical research ... from gene data mining to disease genome sequence analyses. Current Protocol Bioinformatics, 54, 1.30.1-1.30.33. doi: 10.1002/ ... how to submit sequences to identify lncRNA genes. As of Dec 2016, NONCODE has cataloged 487,851 lncRNA genes sequenced from 16 ... Using the Ensembl genome server to browse genomic sequence data. Current Protocols in Bioinformatics, 30, 1.15.1-1.15.48. doi: ...
  http://www.currentprotocols.com/WileyCDA/CPUnit/refId-bi1216.html?quicktabs_cp=toc
*  BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes. - PubMed - NCBI
The development of genome sequencing and DNA microarray analysis of gene expression gives rise to the demand for data-mining ... examines the upstream region of genes in the same gene expression pattern group and looks for regulatory sequence motifs. ... BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes.. Liu X1, Brutlag DL, Liu ... We are currently working on combining BioProspector with a clustering program to explore gene expression networks and ...
  https://www.ncbi.nlm.nih.gov/pubmed/11262934
*  Computational Biology: Genomes, Networks, Evolution | Electrical Engineering and Computer Science | MIT OpenCourseWare
The topics covered include: Genomes: biological sequence analysis, hidden Markov models, gene finding, RNA folding, sequence ... alignment, genome assembly Networks: gene expression analysis, regulatory motifs, graph algorithms, scale-free networks, ... network motifs, network evolution Evolution: comparative genomics, phylogenetics, genome duplication, genome rearrangements, ... Genomes: biological sequence analysis, hidden Markov models, gene finding, RNA folding, sequence alignment, genome assembly ...
  http://dspace.mit.edu/bitstream/handle/1721.1/103560/6-047-fall-2008/contents/index.htm?sequence=242
*  Genomics and Bioinformatics | Department of Medical Genetics
Computational analysis of human genome sequence for the study of gene regulation and rare pediatric disorders. ... Using the latest next-generation sequencing technology and bioinformatics methods to sequence and analyse the genomes and ... Bioinformatics, sequence assembly, transcriptomics, gene regulation networks, high throughput informatics for big data. Birol ... Characterization of the stem cell state and its control by comparative global gene expression and proteomics analyses. ...
  http://medgen.med.ubc.ca/research/medgen-research-faculty-genomics-bioinformatics/
*  PNNL: Discovery Fleshes Out Metabolism of Key Environmental and Energy Bacteria
Genome context analysis of lactate utilization genes across representative members of sequenced bacterial species. Orthologs ... GTL Program and Microbial Genome Program. BER is part of DOE's Office of Science. ... sites of lactate-specific transcription factors are shown by black icons of different shapes with the consensus sequence ...
  http://www.pnl.gov/science/highlights/highlight.asp?groupid=753&id=549
*  Frontiers | Diversity and Distribution of Marine Synechococcus: Multiple Gene Phylogenies for Consensus Classification and...
Here we perform multi-locus sequencing of cultured strains to confirm the congruency of clade classifications between the 16S- ... Here we perform multi-locus sequencing of cultured strains to confirm the congruency of clade classifications between the 16S- ... Strains in bold were selected for multiple gene loci analysis, and strains with sequenced genomes are underlined. Branch tips ... Palenik, B. (1994). Cyanobacterial community structure as seen from RNA-polymerase gene sequence-analysis. Appl. Environ. ...
  https://www.frontiersin.org/articles/10.3389/fmicb.2012.00213/full