Comparative genomic hybridization analysis of adrenocortical t...
Comparative genomic hybridization (CGH) is a molecular cytogenetic technique that allows t ... from adenoma to carcinoma involving activation of oncogenes on chromosomes 5 and 12 and inactivation of tumor suppressor genes ... Comparative genomic hybridization (CGH) is a molecular cytogenetic technique that allows the entire genome of a tumor to be ... Comparative genomic hybridization analysis of adrenocortical tumors.: ...https://www.mysciencework.com/publication/show/comparative-genomic-hybridization-analysis-adrenocortical-tumors-38e7633b
Frontiers | Screening of an E. coli O157:H7 Bacterial Artificial Chromosome Library by Comparative Genomic Hybridization to...
As demonstrated, this may be of particular use for identifying genes with redundant functions such as adhesion and carbon ... The input strain DNA was then compared with the selected strains using comparative DNA hybridization (CGH) on an E. coli ... The input strain DNA was then compared with the selected strains using comparative DNA hybridization (CGH) on an E. coli ... This study aimed to identify genomic regions of EHEC O157:H7 that contribute to colonization and multiplication at this site. A ...https://www.frontiersin.org/articles/10.3389/fmicb.2011.00168/full
Chromosomal amplifications, 3q gain and deletions of 2q33-q37 are the frequent genetic changes in cervical carcinoma | BMC...
Comparative genomic hybridization detects genetic alterations during early stages of cervical cancer progression. Genes ... Comparative Genomic Hybridization. High-molecular weight DNA was isolated from frozen tumors and normal placenta by standard ... Comparative genomic hybridization (CGH)Chromosomal amplificationsDNA copy number changesClinical correlationsCervical carcinoma ... X-YL and CPH were involved with comparative genomic hybridization experiments and data analysis. HA-P, HV and AS assisted in ...https://bmccancer.biomedcentral.com/articles/10.1186/1471-2407-4-5
Copy number variation analysis based on AluScan sequences | Journal of Clinical Bioinformatics | Full Text
Pinkel D, Albertson DG: Array comparative genomic hybridization and its applications in cancer. Nat Genet. 2005, 37 (Suppl): ... genomic instability, and angiogenic gene expression. Neuro Oncol. 2014, 16: 662-670. 10.1093/neuonc/not235.PubMed CentralView ... by Illumina next generation sequencing is comparable in performance to oligonucleotide array comparative genomic hybridisation ... Cook GW, Konkel MK, Walker JA, Bourgeois MG, Fullerton ML, Fussell JT, Herbold HD, Batzer MA: A Comparison of 100 Human Genes ...https://jclinbioinformatics.biomedcentral.com/articles/10.1186/s13336-014-0015-z
Physical mapping of genes in somatic cell radiation hybrids by comparative genomic hybridization to cDNA microarrays | Genome...
Physical mapping of genes in somatic cell radiation hybrids by comparative genomic hybridization to cDNA microarrays. ... of DNA copy number of the genomic region containing the complementing gene. Hybridization of genomic DNA from the selected ... Cy5-labeled genomic DNA from the surviving hybrids containing the HPRT gene was mixed with Cy3-labeled genomic DNA from normal ... Recent developments in microarray technology have been applied in comparative genomic hybridization (array-CGH) by replacing ...https://genomebiology.biomedcentral.com/articles/10.1186/gb-2002-3-6-research0026
Candidate metastasis suppressor genes uncovered by array comparative genomic hybridization in a mouse allograft model of...
Candidate metastasis suppressor genes uncovered by array comparative genomic hybridization in a mouse allograft model of ... Candidate metastasis suppressor genes uncovered by array comparative genomic hybridization in a mouse allograft model of ... Candidate metastasis suppressor genes uncovered by array comparative genomic hybridization in a mouse allograft model of ... We performed high resolution array comparative genomic hybridization on the metastasizing and non-metastasizing allografts to ...http://libros.duhnnae.com/2017/jul8/150149900059-Candidate-metastasis-suppressor-genes-uncovered-by-array-comparative-genomic-hybridization-in-a-mouse-allograft-model-of-prostate-cancer.php
Oligonucleotide Array Comparative Genomic Hybridization (oaCGH) based characterization of genetic deficiencies as an aid to...
Summary of the mutations identified in essential genes as a result of this study.Gene Description Genomic Position (bp) ... Oligonucleotide Array Comparative Genomic Hybridization (oaCGH) based characterization of genetic deficiencies… Jones, Martin R ... Oligonucleotide Array Comparative Genomic Hybridization (oaCGH) based characterization of genetic deficiencies as an aid to ... Results: We have applied oligonucleotide array Comparative Genomic Hybridization (oaCGH) to the high resolution, molecular ...https://open.library.ubc.ca/cIRcle/collections/facultyresearchandpublications/52383/items/1.0223622
Analysis of Genomic DNA Alterations in Familial Schizophrenia - Full Text View - ClinicalTrials.gov
multiple genes. array-comparative genomic hybridization (CGH). genomic DNA. Chinese Han People. ... In this study, the investigators will conduct an array-based comparative genomic hybridization (CGH) with genomic DNA of many ... Array-based comparative genomic hybridization (CGH) allows high-throughput genome-wide survey for DNA copy number aberrations, ... Analysis of Genomic DNA Alterations in Familial Schizophrenia. The safety and scientific validity of this study is the ...https://clinicaltrials.gov/ct2/show/NCT00166738
Protocols and Video Articles Authored by Jennifer L. Freeman (Translated to Hebrew)
Gene Expression גלובל ניתוח באמצעות פלטפורמה דג הזברה microarray oligonucleotide' ... Construction and Application of a Zebrafish Array Comparative Genomic Hybridization Platform Genes, Chromosomes & Cancer. Feb, ... To detect genetic imbalances in an unbiased genome-wide fashion, array comparative genomic hybridization (CGH) can be used. We ... Moreover, the availability of a new molecular cytogenetic technique, array-based comparative genomic hybridization (aCGH), is ...https://www.jove.com/author/Jennifer+L._Freeman?language=Hebrew
Efficacy and Safety of PD-0332991 in Patients With Advanced Gastrointestinal Stromal Tumors Refractory to Imatinib and...
RB1 gene deletion assessed by array-comparative genomic hybridization (array-CGH). *Patients who received anti-cancer drugs ≤ 5 ... CDKN2A gene deletion assessed by array-comparative genomic hybridization (array-CGH). *Unresectable and/or metastatic disease ... This alteration is detectable by comparative genomic hybridization which is a technique highly manageable in the context of ... gene in GISTs is likely to be a causative event that leads to the overexpression of CINSARC genes, which in turn induce ...https://clinicaltrials.gov/ct2/show/study/NCT01907607?view=record
Genomic instability influences the transcriptome and proteome in endometrial cancer subtypes - Habermann,, Bündgen,, Gemoll,...
We mapped ploidy-associated chromosomal aberrations and identified corresponding gene and protein expression changes in ... Genomic instability influences the transcriptome and proteome in endometrial cancer subtypes : In addition to clinical ... Results:Comparative genomic hybridization revealed ploidyassociated specific, recurrent genomic imbalances. Gene expression ... Results Comparative genomic hybridization revealed ploidy-associated specific, recurrent genomic imbalances. Gene expression ...http://www.youscribe.com/catalogue/documents/savoirs/genomic-instability-influences-the-transcriptome-and-proteome-in-2051911
Springer NM[au] - PubMed - NCBI
A comparative genomic hybridization approach to study gene copy number variations among Chinese hamster cell lines. ... Genomic distribution of H3K9me2 and DNA methylation in a maize genome.. West PT, Li Q, Ji L, Eichten SR, Song J, Vaughn MW, ... Natural variation for gene expression responses to abiotic stress in maize.. Waters AJ, Makarevitch I, Noshay J, Burghardt LT, ... Biochim Biophys Acta Gene Regul Mech. 2017 Jan;1860(1):1-2. doi: 10.1016/j.bbagrm.2016.11.004. Epub 2016 Nov 16. No abstract ...https://www.ncbi.nlm.nih.gov/pubmed?cmd=search&term=Springer+NM%5Bau%5D&dispmax=50
Dykema K[au] - PubMed - NCBI
Comparison of array-based comparative genomic hybridization with gene expression-based regional expression biases to identify ... Array-based comparative genomic hybridization reveals recurrent chromosomal aberrations and Jab1 as a potential target for 8q ... Systematic sequencing of renal carcinoma reveals inactivation of histone modifying genes.. Dalgliesh GL, Furge K, Greenman C, ... Acquiring genome-wide gene expression profiles in Guthrie card blood spots using microarrays. ...https://www.ncbi.nlm.nih.gov/pubmed?cmd=search&term=Dykema+K%5Bau%5D&dispmax=50
Julie M. Gastier-Foster, Ph.D. :: Nationwide Children's Hospital, Columbus, Ohio
Unexpected detection of dystrophin gene deletions by array comparative genomic hybridization. Am J Med Genet A. Vol. 152A, no. ... Unexpected detection of dystrophin gene deletions by array comparative genomic hybridization. Am J Med Genet A. Vol. 152A, no. ... Unexpected Detection of Dystrophin Gene Deletions by Array Comparative Genomic Hybridization. AMERICAN JOURNAL OF MEDICAL ... Unexpected Detection of Dystrophin Gene Deletions by Array Comparative Genomic Hybridization. AMERICAN JOURNAL OF MEDICAL ...https://www.nationwidechildrens.org/julie-m-gastier-foster
... we did not identify any alterations involving the PIK3CA gene by comparative genomic hybridization array (data not shown). Thus ... Comparative genomic hybridization array. DNA extraction, labeling, and hybridization conditions together with software used for ... of comparative genomic hybridization array data in our series and in those of others did not reveal loss of the PTEN gene (31, ... as assessed by comparative genomic hybridization array analysis, although this event was documented previously in various human ...http://clincancerres.aacrjournals.org/content/14/21/6761
Twenty-one cases of blastic plasmacytoid dendritic cell neoplasm: focus on biallelic locus 9p21.3 deletion | Blood Journal
... array-based comparative genomic hybridization (aCGH) and gene expression profiling have highlighted peculiar chromosomal losses ... We analyzed 21 cases with array-based comparative genomic hybridization (aCGH). Complete or partial chromosomal losses largely ... Recurrent genomic aberrations combined with deletions of various tumor suppressor genes may deregulate the G1/S transition in ... γ-chain genes was performed as previously described.13 In situ hybridization for EBV used probes for EBV-encoded early RNAs ( ...http://www.bloodjournal.org/content/118/17/4591?sso-checked=true
Metastatic potential is determined early in synovial sarcoma development and reflected by tumor molecular features. - PubMed -...
Comparative Genomic Hybridization. *Female. *Gene Expression Regulation, Neoplastic. *Humans. *Karyotype. *Kinesin/biosynthesis ... Sixty-four frozen tumor specimens from 54 SynSa patients were subjected to array comparative genomic hybridization (aCGH) and ... Aurora kinase A; Gene expression profiling; Genomic complexity; Kinesin family member 18A; Metastasis; Synovial sarcoma ... Analysis of genomic index (GI) based on aCGH profiles demonstrated that the SynSa1 group consisted of tumors with significantly ...https://www.ncbi.nlm.nih.gov/pubmed/24842110
Protocols and Video Articles Authored by Patrick Collins
... gene expression profiling and comparative genomic hybridization. Methods for a third technique, location analysis, are evolving ... which either transcribe the Ifng gene and silence the Il4 gene or transcribe the Il4 gene and silence the Ifng gene, ... Using in situ hybridization, we show that the ferritin genes of C. elegans, both ferritin-1 and ferritin-2, are expressed along ... incompletely recessive gene. There was also evidence of a minor dominant gene present in approximately 5% of Strong-R ...https://www.jove.com/author/Patrick_Collins
Genetic Analysis of Congenital Diaphragmatic Disorders - Full Text View - ClinicalTrials.gov
... and comparative genomic hybridization (CGH) arrays. ... Localize the gene(s) for CDD to specific chromosomal segments ... Genes implicated in CDD can be identified by linkage analysis [ Time Frame: 5 years ]. Using the Utah Population Database, ... Isolate and characterize genes involved in the pathogenesis of CDD.. *Develop molecular markers that will facilitate accurate ... In sporadic cases, characterize the role of somatic mutations in CDDs by using a candidate gene approach, ...https://clinicaltrials.gov/ct2/show/NCT01243229?recr=Open&cond=%22Hernia%2C+Diaphragmatic%22&rank=11
Prior Philippe - Publications des agents du Cirad
Horizontal gene transfer between Ralstonia solanacearum strains detected by comparative genomic hybridization on microarrays ... Comparative genomic analysis of Ralstonia solanacearum reveals candidate genes for host specificity ... Genomic structure and phylogeny of the plant pathogen Ralstonia solanacearum inferred from gene distribution analysis ... In planta comparative transcriptomics of host-adapted strains of Ralstonia solanacearum Ailloud F., Lowe T., Rob ne I., ...http://publications.cirad.fr/auteur.php?mat=12170
CapitalBio to Provide Roche NimbleGen Array Services in China | GenomeWeb
... comparative genomic hybridization and copy number variation, and DNA methylation services to Asian customers. ... Beijing-based CapitalBio has been certified to offer NimbleGen gene expression, ... Beijing-based CapitalBio has been certified to offer NimbleGen gene expression, comparative genomic hybridization and copy ... The Same Genes Keep Getting Asked to Prom. Researchers find that historical factors influence which genes are the most highly ...https://www.genomeweb.com/arrays/capitalbio-provide-roche-nimblegen-array-services-china
Review. Cichlid fish genomics | Philosophical Transactions of the Royal Society B: Biological Sciences
2009 Interspecific profiling of gene expression informed by comparative genomic hybridization: a review and a novel approach in ... 2004 The evolution of genes for pigmentation in African cichlid fishes. Gene 343, 337-346. doi:10.1016/j.gene.2004.09.019 (doi: ... Gene 373, 126-133. doi:10.1016/j.gene.2006.01.016 (doi:10.1016/j.gene.2006.01.016). ... a common candidate gene for coloration ) was upregulated in the skin of gold fishes, comparative genomic analyses ...http://rstb.royalsocietypublishing.org/content/367/1587/385
Diet, nutrients, phytochemicals, and cancer metastasis suppressor genes | SpringerLink
2009). Candidate metastasis suppressor genes uncovered by array comparative genomic hybridization in a mouse allograft model of ... 1999). Methylation of the CD44 metastasis suppressor gene in human prostate cancer. Cancer Research, 59(10), 2329-2331.PubMed ... Kim, H. R., Han, R. X., Diao, Y. F., Park, C. S., & Jin, D. I. (2011). Epigenetic characterization of the PBEF and TIMP-2 genes ... Meadows, G. G., Zhang, H., & Ge, X. (2001). Specific amino acid deficiency alters the expression of genes in human melanoma and ...https://link.springer.com/article/10.1007/s10555-012-9369-5
Ryanodine receptor type 3 (RYR3) as a novel gene associated with a myopathy with nemaline bodies
Copy number variation in known NEM genes was excluded by NEM-targeted comparative genomic hybridization array. Next-generation ... Ryanodine receptor type 3 (RYR3) as a novel gene associated with a myopathy with nemaline bodies. Nilipour, Y. ... BACKGROUND AND PURPOSE: Nemaline myopathy (NEM) has been associated with mutations in 12 genes to date. However, for some ... This study describes compound heterozygosity for rare variants in ryanodine receptor type 3 (RYR3) gene in one such patient. ...http://umu.diva-portal.org/smash/record.jsf?pid=diva2:1195330
UniversitätsKlinikum Heidelberg: Publikationen
Candidate genes in breast cancer revealed by microarray-based comparative genomic hybridization of archived tissue. Cancer Res. ... Gutschner T, Baas M, Diederichs S. (2011) Noncoding RNA gene silencing through genomic integration of RNA destabilizing ... Genes Dev. 22(11):1439-44. (IF: 14.8). Andrassy M, Volz HC, Igwe JC, Funke B, Eichberger SN, Kaya Z, Buss S, Autschbach F, ... Genes & Development. 27(23):2543-8. (IF:12.44) *These two authors contributed equally to this work. Hämmerle M, Gutschner T, ...https://www.klinikum.uni-heidelberg.de/Publikationen.424.0.html