Genome-wide gene expression analysis supports a developmental model of low temperature tolerance gene regulation in wheat ...
Functional assignments using GO annotations showed that genes involved in transport, oxidation-reduction, and stress response ... The levels of expression of these genes were highly influenced by the initial rate and the duration of the gene's response to ... Using gene-specific ANOVA we identified 12,901 genes (at p < 0.001) that change in expression with respect to both genotype and ... Global expression of genes in the crowns of 3-leaf stage plants cold-acclimated at 6°C for 0, 2, 14, 21, 38, 42, 56 and 70 days ...https://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-12-299
ChIPseeker: an R package for ChIP peak Annotation, Comparison and Visualization
Annotation also create the possibility of integrating expression profile data to predict gene expression regulation. ChIPseeker ... We can use it as an index to estimate how well biological replications are. Even more important is applying to infer ... these two proteins may form a complex or have interaction in regulation chromosome remodelling or gene expression. ChIPseeker1 ... assigning genomic annotation... 2018-01-21 11:42:34 PM ## ,, adding gene annotation... 2018-01-21 11:42:52 PM ## ,, assigning ...http://bioconductor.org/packages/devel/bioc/vignettes/ChIPseeker/inst/doc/ChIPseeker.html
Genome assembly and genome annotation, Analysis of gene expression & regulation, Gene science and engineering, Computational ... Gene Ontology and taxonomy study, Biological data integration, mining and visualization, Genetic and biochemical networks and ... regulation, High performance bio-computing, Modeling software in Bioinformatics, Makeup language in systems biology, ... evolutionary biology, Measuring biodiversity, Molecular docking, Comparative genomics, Modeling biological systems, High- ...http://www.serialspublications.com/journals/journal-detail.php?jid=284
ZC3H7B - Zinc finger CCCH domain-containing protein 7B - Homo sapiens (Human) - ZC3H7B gene & protein
... help/gene_ontology' target='_top'>More...,/a>,/p>GO - Biological processi. *posttranscriptional regulation of gene expression ... Annotation score:5 out of 5. ,p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB ... help/expression_section' target='_top'>More...,/a>,/p>Expressioni. Gene expression databases. Bgee dataBase for Gene Expression ... p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of ...http://www.uniprot.org/uniprot/Q9UGR2
Computational Methods for Annotation Transfers from Sequence | SpringerLink
... which can survey gene expression regulation, genomic organization, and variation on a large scale . Similarly, parallel ... 5 De Novo Function Annotation Using Biological Features. The function annotation methods described so far make use of homology ... Rogozin IB, Managadze D, Shabalina SA, Koonin EV (2014) Gene family level comparative analysis of gene expression in mammals ... Evaluating functional annotations of enzymes using the gene ontology. In: Dessimoz C, Škunca N (eds) The gene ontology handbook ...https://link.springer.com/protocol/10.1007/978-1-4939-3743-1_5
esr1 - Estrogen receptor - Danio rerio (Zebrafish) - esr1 gene & protein
The steroid hormones and their receptors are involved in the regulation of eukaryotic gene expression and affect cellular ... Biological process. Transcription, Transcription regulationUniRule annotation. ,p>Information which has been generated by the ... help/expression_section' target='_top'>More...,/a>,/p>Expressioni. Gene expression databases. Bgee dataBase for Gene Expression ... Unreviewed-Annotation score: Annotation score:3 out of 5. ,p>The annotation score provides a heuristic measure of the ...https://www.uniprot.org/uniprot/A5PMH3
DNA annotation - Wikipedia
biochemical function biological function involved regulation and interactions expression These steps may involve both ... Educational materials on some aspects of biological annotation from the 2006 Gene Ontology annotation camp and similar events ... DNA annotation or genome annotation is the process of identifying the locations of genes and all of the coding regions in a ... The simpliest way to perform gene annotation relies on homology based search tools, like BLAST, to search for homologous genes ...https://en.wikipedia.org/wiki/DNA_annotation
Lonp1 - Lon protease homolog, mitochondrial precursor - Mus musculus (Mouse) - Lonp1 gene & protein
Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial ... May regulate mitochondrial DNA replication and/or gene expression using site-specific, single-stranded DNA binding to target ... View the complete GO annotation on QuickGO .... Protein-protein interaction databases. The Biological General Repository for ... Expressioni. ,p>This subsection of the 'Expression' section provides information on the expression of a gene at the mRNA or ...http://www.uniprot.org/uniprot/Q8CGK3
Sequence mining and transcript profiling to explore differentially expressed genes associated with lipid biosynthesis during...
Here, we evaluated changes in gene expression over the course of seed development using Illumina (formerly Solexa) RNA- ... We selected 12 differentially expressed genes and analyzed their expressions using qRT-PCR. The results were consistent with ... However, it is still uncertain how many genes and which genes are involved in lipid biosynthesis. ... All of the genes identified in our research have significance for breeding soybeans with increased oil contents. ...https://bmcplantbiol.biomedcentral.com/articles/10.1186/1471-2229-12-122
SPRR2A - Wikipedia
2006). "Expression and Regulation of Cornified Envelope Proteins in Human Corneal Epithelium". Invest. Ophthalmol. Vis. Sci. 47 ... 2006). "The DNA sequence and biological annotation of human chromosome 1". Nature. 441 (7091): 315-21. doi:10.1038/nature04727 ... 2004). "Estrogen regulates the expression of the small proline-rich 2 gene family in the mouse uterus". Mol. Cells. 17 (3): 477 ... "Interdependent transcription control elements regulate the expression of the SPRR2A gene during keratinocyte terminal ...https://en.wikipedia.org/wiki/SPRR2A
Regulatory RNAs - Basics, Methods and Applications | Bibekanand Mallick | Springer
... will provide a major information resource on current research in the fast-moving fields of RNA and gene expression regulation. ... It addresses both the biogenesis and mechanism of action of regulatory RNAs with a primary focus on their annotation, ... applications of these revolutionary regulatory molecules in understanding biological systems and diseases, including ... These RNAs most often act as riboregulators, and actively participate in the regulation of important cellular functions at the ...http://www.springer.com/us/book/9783642225161
Tumor suppressor miR-1 restrains epithelial-mesenchymal transition and metastasis of colorectal carcinoma via the MAPK and PI3K...
Molecular function annotation indicated that miR-1 may participate in cell signal transduction, regulation of gene expression ... D) The histogram indicated main biological processes involved in miR-1 using Gene Ontology. (E) Both enlarged DIGE images and ... Because the effect of miR-1 on cell migration and gene expression regulation, we detected the change of EMT markers in SW480 ... Because we have observed miR-1-mediated reduction of migration ability and gene expression regulation, we asked whether miR-1 ...https://translational-medicine.biomedcentral.com/articles/10.1186/s12967-014-0244-8
BayMiR: inferring evidence for endogenous miRNA-induced gene repression from mRNA expression profiles | BMC Genomics | Full Text
Gene ontology biological process (GO-BP) annotations were downloaded from the Gene Ontology Website on April 15th 2012. The ... "regulation of expression" suggesting that miRNAs have substantial influence in gene regulation through their control of other ... relevant biological model and uses a large collection gene expression data to decipher the impact of miRNAs on gene expression ... Example of combinatorial regulation masking inverse correlation. Shown in green is the expression level of a target gene and in ...https://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-14-592
MPK17 - Mitogen-activated protein kinase 17 - Oryza sativa subsp. japonica (Rice) - MPK17 gene & protein
... help/gene_ontology' target='_top'>More...,/a>,/p>GO - Biological processi. *regulation of gene expression Source: GO_Central ... Annotation score:3 out of 5. ,p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB ... expression (up-regulation, down-regulation, constitutive expression).,p>,a href='/help/induction' target='_top'>More...,/a>,/p> ... Gene expression databases. Genevisible search portal to normalized and curated expression data from Genevestigator ...http://www.uniprot.org/uniprot/Q6L5F7
JoVE | Peer Reviewed Scientific Video Journal - Methods and Protocols
JoVE publishes peer-reviewed scientific video protocols to accelerate biological, medical, chemical and physical research. ... whether genetic variability in the SNCA gene modulates the risk to develop sporadic PD via regulation of SNCA expression ... which lead to a detailed understanding of the role of single genes in well-defined biological problems. However, ... Flexible model organisms such as Drosophila are ideal for adapting these new technologies because of their strong annotation ...https://www.jove.com/visualize/abstract/19834617/genetic-regulation-alpha-synuclein-mrna-expression-various-human
Effects of insufficient sleep on circadian rhythmicity and expression amplitude of the human blood transcriptome | PNAS
... and the regulation of gene expression (e.g., TCEA3, ELP2, ELAV1, SNRPF, HNRNPU). Functional annotation analyses of the rhythmic ... Biological processes affected included chromatin modification, gene-expression regulation, macromolecular metabolism, and ... of all genes, 61.1% of circadian genes) in-phase and 281 genes (1.3% of all genes, 19.0% of circadian genes) in antiphase with ... The affected genes are involved in chromatin remodeling, regulation of gene expression, and immune and stress responses. The ...http://www.pnas.org/content/110/12/E1132
Znf281 - Zinc finger protein 281 - Mus musculus (Mouse) - Znf281 gene & protein
Represses the transcription of a number of genes including GAST, ODC1 and VIM. Binds to the G-rich box in the enhancer region ... Transcription repressor that plays a role in regulation of embryonic stem cells (ESCs) differentiation. Required for ESCs ... negative regulation of gene expression Source: UniProtKB. *negative regulation of transcription, DNA-templated Source: ... Annotation score:5 out of 5. ,p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB ...http://www.uniprot.org/uniprot/Q99LI5
Efeitos nutricionais sobre a progressão do desenvolvimento adulto de operárias Apis...
Nutrition, oxidative stress and gene expression regulation are features responsible for development and lifespan. Many animals ... All these biological processes are consistent with naturally older workers, such the foragers. The functional annotation of DP ... However, the biological circuit nutrition-longevity is not fully elucidated in organisms primarily infertile and whose food ... Among these 439 coding (mRNA) and non-coding (miRNA) genes, 10 were validated in fatty bodies by RT-qPCR, and four of them ...http://www.teses.usp.br/teses/disponiveis/17/17135/tde-22052015-152715/pt-br.php
Aquatic Plant Genomics: Advances, Applications, and Prospects
... that studies the genome composition of organisms and the precise structure of genes and their expression and regulation. ... gene annotation, marker development, and miRNA potential target genes validation under abiotic stresses in Oenanthe javanica," ... These miRNAs were predicted to regulate 137 genes related to growth and development and other biological processes in sacred ... analysis of RCA gene expression pattern demonstrates that the aerial and submerged environments regulate RCA gene expression at ...https://www.hindawi.com/journals/ijg/2017/6347874/
Comparative transcriptome analysis of aerial and subterranean pods development provides insights into seed abortion in peanut |...
Gene expression profiles were generated using a high-density peanut microarray with pooling three biological replicates ... Functional annotation showed their mainly involvement in biosynthesis, metabolism, transcription regulation, transporting, ... Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression ... The actin gene was amplified along with the target gene as reference to normalize expression between different samples. All ...https://link.springer.com/article/10.1007%2Fs11103-014-0193-x
ZFP57 - Zinc finger protein 57 homolog - Homo sapiens (Human) - ZFP57 gene & protein
Transcription regulator required to maintain maternal and paternal gene imprinting, a process by which gene expression is ... View the complete GO annotation on QuickGO .... GO - Biological processi. *DNA methylation involved in embryo development ... regulation of gene expression by genetic imprinting Source: UniProtKBInferred from mutant phenotypei*18622393 ... help/expression_section' target='_top'>More...,/a>,/p>Expressioni. Gene expression databases. Bgee dataBase for Gene Expression ...https://www.uniprot.org/uniprot/Q9NU63
Assessing the impact of human genome annotation choice on RNA-seq expression estimates | BMC Bioinformatics | Full Text
is the mean of expression estimates across replicates with the same biological condition, and n is the number of targeted genes ... The second dataset (accession number: SRP000727) studies alternative isoform regulation in human tissue transcriptomes . It ... including AceView Genes, Ensembl Genes, H-InvDB Genes, RefSeq Genes, UCSC Known Genes, and Vega Genes. Since each annotation ... Ensembl Genes, H-InvDB Genes, RefSeq Genes, UCSC Known Genes, and Vega Genes. Characteristics of these annotations differ ...https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-14-S11-S8
IJMS | Free Full-Text | Abscisic Acid (ABA) Regulation of Arabidopsis SR Protein Gene Expression | HTML
... while the expression of seven SR and SR-related genes is affected by alterations in key components of the ABA pathway. Finally ... despite pervasiveness of established ABA-responsive promoter elements in Arabidopsis SR and SR-like genes, their expression is ... Using real-time RT-qPCR, we analyzed total steady-state transcript levels of the 18 SR and two SR-like genes from Arabidopsis ... We also searched for ABA-responsive cis elements in the upstream regions of the 20 genes. We found that members of the plant- ...http://www.mdpi.com/1422-0067/15/10/17541/htm
Chrm4 - Muscarinic acetylcholine receptor M4 - Rattus norvegicus (Rat) - Chrm4 gene & protein
Covers cases where the annotation is inferred from the timing or location of expression of a gene.,/p> ,p>More information in ... regulation of locomotion Source: InterPro. *response to organic substance Source: RGD ,p>Inferred from Expression Pattern,/p> , ... help/gene_ontology' target='_top'>More...,/a>,/p>GO - Biological processi. *adenylate cyclase-inhibiting G-protein coupled ... Annotation score:5 out of 5. ,p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB ...http://www.uniprot.org/uniprot/P08485
Tau GSTs involved in regulation of leaf abscission by comparison the gene profiling of Me GSTs in various abscission-promoting...
GO annotation indicated that all 17 Tau GST genes participated in the pathway of toxin catabolism (GO: 0009407). The expression ... and three pots were used as a biological replicate . To identify the cassava GST genes in abscission zones, 90 days old of ... the levels of up-regulation were different in both treatments, more genes with higher expression levels (, 5 times expression ... GO annotation indicated that all the GST genes participated in the pathway of toxin catabolism (GO: 0009407). 2 GST genes were ...https://link.springer.com/article/10.1186%2Fs12863-018-0627-6