*  British Library EThOS: Using ontology and semantic web services to support modeling in systems biology
By examining our ontology-centered framework in practice, we conclude that by using ontology to represent biological models and ... In this framework, first we specify an ontology-based meta-model for building biological models. This meta-model supports using ... In our study, we propose an ontology-centered framework within the Semantic Web infrastructure that aims at standardizing ... We also conclude that ontology-based biological models with formal semantics are essential to standardize knowledge in ...
  http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.564689
*  DiscoverySpace: an interactive data analysis application | Springer for Research & Development
Users can seamlessly traverse references between biological databases and draw together annotations in an intuitive tabular... ... Gene Ontology Resource Description Framework Biological Database Resource Description Framework Graph Refseq Transcript ... The DiscoveryDB database supports 26 biological databases, including Ensembl [10], Gene Ontology (GO) [11], Refseq [12], Entrez ... Many groups have used ontologies, or controlled vocabularies, to describe biological knowledge domains: for example the GO [26 ...
  https://rd.springer.com/article/10.1186/gb-2007-8-1-r6
*  Computational Bioscience Research Center - Knowledge, Text and Data-Mining
AberOWL - a framework for ontology-based access to biological data. *. Dragon Extractor of Methylated Genes in Diseases -. ... OntoFUNC - supports ontology enrichment analysis with OWL reasoning over arbitrary OWL ontologies. ... Main WebsiteBiological and Environmental Science and Engineering Division (BESE)Computer, Electrical and Mathematical Science ... DPubChem: predicts biological activities of chemicals/drugs based on high-throughput screening assays. ...
  https://cb.kaust.edu.sa/Pages/Knowledge-Text-Data-Mining.aspx
*  Nigam H. Shah, MBBS, PhD | Stanford Medicine Profiles
... as SPARQL and can be visualized in the form of a biological network.The PHARE ontology serves as a common semantic framework to ... In fact, bio-ontologies are beginning to proliferate in step with accruing biological data. The myriad of ontologies being ... These ontologies have been mainly expressed in either the Open Biomedical Ontology (OBO) format or the Web Ontology Language ( ... Existing OBO ontologies, including the Gene Ontology, are undergoing coordinated reform, and new ontologies are being created ...
  https://med.stanford.edu/profiles/nigam-shah
*  CEUR-WS.org/Vol-1327 - The 5th International Conference on Biomedical Ontology, 2014
A Nanopublication Framework for Biological Networks using Cytoscape.js 90-92 Jim Mccusker, Rui Yan, Kusum Solanki, John ... OGG: a Biological Ontology for Representing Genes and Genomes in Specific Organisms 13-20 Yongqun He, Yue Liu, Bin Zhao ... OBCS: The Ontology of Biological and Clinical Statistics 65. Jie Zheng, Marcelline R. Harris, Anna Maria Masci, Yu Lin, Alfred ... An Initial Framework for an Ontology-based Mobile Application for Vaccine Information Retrieval and Education 81-83 Muhammad ...
  http://ceur-ws.org/Vol-1327/
*  Events: CfP: 5th Symposium on Integrative Bioinformatics 2008 - Bioinformatics.org
Strong emphasis on open access to biological information as well as Free and Open Source software. ... Quality and consistency of biological ontologies. *Integrative modelling and simulation frameworks. *Integrative data and text ...
  http://www.bioinformatics.org/forums/forum.php?forum_id=6696
*  Difference between revisions of "Synthetic Biology:Semantic web ontology/Examples" - OpenWetWare
a modeling framework with the ability to accommodate diverse biological information sources ... HyBrow ontology for representing biological processes at different levels of detail. Domain level ontologies. Life Sciences. * ... Gene Ontology Next Generation: GONG project aims to make tools and procedures for easy migration of biological ontologies to ... Basic Formal Ontology (BFO). Intermediate level ontologies. *EXPO ontology represents different stages of an experiment and the ...
  https://openwetware.org/wiki/?title=Synthetic_Biology:Semantic_web_ontology/Examples&oldid=244027&diff=prev
*  Toward an Ontology-Based Framework for Clinical Research Databases
Object - population, population arm, human subject, animal subject, biological sample, compound, complex compound, software, ... General Framework. Two reference ontologies were chosen as the foundation for OBX design - the Basic Formal Ontology (BFO) and ... Toward an Ontology-Based Framework for Clinical Research Databases. Y. Megan Kong,1 Carl Dahlke,2 Qun Xiang,1 Yu Qian,1,3 David ... and ontology standards like the Ontology for Biomedical Investigations (OBI) through the Open Biomedical Ontology (OBO) Foundry ...
  http://pubmedcentralcanada.ca/pmcc/articles/PMC2953614/?lang=en-ca
*  The semantics of Chemical Markup Language (CML): dictionaries and conventions | Journal of Cheminformatics | Full Text
Open Biological and Biomedical Ontologies (OBO)[4] framework, to uncontrolled folksonomy-like tagging. Although we have ... The biosciences have several approaches for creating ontologies, such as the Gene Ontology (GO)[26]. GO was designed as a ... There are many biological units (e.g. "The optimum dose of rIL2 was 100-500 units (Jurkat units)/ml, "[23]) which do not fit ... Open Biological and Biomedical Ontologies (OBO). Accessed 2011-05-25, [http://www.obofoundry.org/]. ...
  https://jcheminf.springeropen.com/articles/10.1186/1758-2946-3-43
*  Fluxomics - Wikipedia
... fluxomic methods are considered a key enabling technology due to their unique position in the ontology of biological processes ... allowing genome scale stoichiometric models to act as a framework for the integration of diverse biological datasets. One ... Fluxomics describes the various approaches that seek to determine the rates of metabolic reactions within a biological entity. ... Systems biology recognizes the complexity of biological systems and has the broader goal of explaining and predicting this ...
  https://en.wikipedia.org/wiki/Fluxomics
*  IEEE Computer Society Bioinformatics Conference
We have integrated this ontology with a discrete event systems framework to support qualitative reasoning. The framework adopts ... Text Mining and Ontologies HyBrow: A System for Hypothesis Validation. Identifying Gene and Protein Names from Biological Texts ... We annotated the genes by their "biological processes" of Gene Ontology (GO). Our result suggests that the CL-Fuzzy logic data ... We have developed an event-based ontology for representing both biological processes and data from different sources at varying ...
  http://conferences.computer.org/bioinformatics/CSB2003/SectA.html
*  From Peer-Reviewed to Peer-Reproduced in Scholarly Publishing: The Complementary Roles of Data Models and Workflows in...
By structuring the information in the published paper using these data and scientific workflow modelling frameworks, it was ... models are conceptual data modelling frameworks that can structure such information from scientific papers. Computational ... using a mapping to Open Biological and Biomedical Ontologies (OBO) resources [39]. In particular, mapping to the Ontology for ... Ontologies Is the Subject Area "Ontologies" applicable to this article? Yes. No. ...
  http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0127612
*  Formalization and reuse of scientific research | Journal of The Royal Society Interface
... but all essential information about biological experiments. The EXPO (a generic ontology of scientific experiments) ontology ... These limitations have led to the development of more general ontologies to provide a framework for recording not only ... Here, we propose a formal framework for using logical formalisms to promote reuse. We demonstrate the utility of this framework ... To formalize Adam's functional genomics experiments, we developed the LABORS ontology (LABoratory Ontology for Robot Scientists ...
  http://rsif.royalsocietypublishing.org/content/8/63/1440
*  Ontology (information science) - Wikipedia
... ontology Lattice Ontology Ontology alignment Ontology chart Open Biomedical Ontologies Open Semantic Framework Soft ontology ... National Center for Biological Ontology (NCBO). "Ontology browser for most of the Open Biological and Biomedical Ontologies". ... OBO-Edit, an ontology browser for most of the Open Biological and Biomedical Ontologies OBO Foundry, a suite of interoperable ... An ontology language is a formal language used to encode an ontology. There are a number of such languages for ontologies, both ...
  https://en.wikipedia.org/wiki/Ontology_(information_science)
*  Integrating phenotype ontologies across multiple species | Genome Biology | Full Text
Mouse Pathology ontology. NIF: Neurosciences Informatics Framework. OBO: Open Biological Ontologies. OWL: Web Ontology Language ... Chemical Entities of Biological Interest (CHEBI) is an ontology of chemical entities [13]. The OBO Protein ontology (PRO) [14] ... Open biological ontologies. Ontologies consist of collections of classes, arranged in a relational graph, to provide a ... NIF: Neuroscience Information Framework; DDANAT: Dictyostelium Discoideum Anatomy Ontology; FBbt: FlyBase anatomy ontology; MGI ...
  https://genomebiology.biomedcentral.com/articles/10.1186/gb-2010-11-1-r2
*  Integrating Large, Disparate, Biomedical Ontologies to Boost Organ De…
8. For over a decade, analysis of biological networks via network and graph theoryhas revealed the importance of locally-dense ... Network-based approaches to disease have the potential to provide a framework for classifying disease, defining susceptibility ... Method and materials (continued) The FMA ontology is loaded (as OWL/RDF) into a triple store for remote querying via SPARQL ... The Foundational Model of Anatomy (FMA) is a vast ontology with an objective to conceptualize the physical objects and spaces ...
  https://www.slideshare.net/chimezie/integrating-large-disparate-biomedical-ontologies-to-boost-organ-development-network-connectivity
*  Download Fundamentals Of General, Organic, And Biological Chemistry 2006
... and Biological Chemistry 2006 from prehistoric camera data at 6 genes after probability in the cells t( few categories file 8 ... download Fundamentals of General, Organic, and: CA Manager Framework: existing Customised Workflows for Ontology Population and ... Download Fundamentals Of General, Organic, And Biological Chemistry 2006. We Can Help Your Business DNA download Fundamentals ... 400 million changes, using download Fundamentals of General, Organic, and Biological for strains to View, both t et al. Unable ...
  http://dataprintusa.com/library/download-Fundamentals-of-General%2C-Organic%2C-and-Biological-Chemistry-2006.php
*  New resources for functional analysis of omics data for the genus Aspergillus | BMC Genomics | Full Text
of the Gene Ontology Consortium TRGG: The Gene Ontology's Reference Genome Project: a unified framework for functional ... Bluthgen N, Brand K, Cajavec B, Swat M, Herzel H, Beule D: Biological profiling of gene groups utilizing Gene Ontology. Genome ... Gene Ontology (GO) is a framework for functional annotation of gene products aiming to provide a unique vocabulary for living ... As such, Gene Ontology (GO) annotation has become a well accepted framework for functional annotation. The genus Aspergillus ...
  https://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-12-486
*  The MGED Ontology: A Framework for Describing Functional Genomics Experiments - pdf descargar
A Framework for Describing Functional Genomics Experiments. . Biblioteca virtual para leer y descargar libros, documentos, ... Our solution was to create a framework fordescribing microarray experiments with an initial focus on the biological sample ... The MGED Ontology: A Framework for Describing Functional Genomics Experiments - Descarga este documento en PDF. Documentación ... taking advantage of the structure provided by the ontology. The applicationof an ontology of experimental conditions extends ...
  http://libros.duhnnae.com/2017/jul7/150081297272-The-MGED-Ontology-A-Framework-for-Describing-Functional-Genomics-Experiments.php
*  Scientific Programme
BioSPARQL: Ontology-based smart building of SPARQL queries for biological Linked Open Data. Norio Kobayashi and Tetsuro Toyoda ... The Biological Expression Language (BEL) and BEL Framework is an emerging open-platform technology specifically designed to ... BioLOD.org: Ontology-based integration of Biological Linked Open Data. Koro Nishikata and Tetsuro Toyoda ... Using standard and non standard vocabularies & Ontologies. *creating customizable, computable biological networks from captured ...
  http://www.swat4ls.org/workshops/london2011/scientific-programme/
*  CDK5 | Cancer Genetics Web
We have developed a bioinformatics framework that combines literature mining with information from biomedical ontologies and ... Given the wealth of bioinformatics resources and the growing complexity of biological information, it is valuable to integrate ... Ontology:. What does this gene/protein do?. Show (89). CDK5 is implicated in:. - acetylcholine receptor activator activity - ...
  http://www.cancerindex.org/geneweb/CDK5.htm
*  Frontiers | The Growing Importance of CNVs: New Insights for Detection and Clinical Interpretation | Genetics
General CNV-GWA Framework. Association between a given trait and a CNV locus can be performed in several ways. For quantitative ... CNV and Biological/Clinical Interpretation. The importance of rare CNVs emerged with a few GWAs (Glessner et al., 2010; Grozeva ... 2005). The sequence ontology: a tool for the unification of genome annotations. Genome Biol. 6, R44. ... 2011). A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat. Genet. 43, 491-498. ...
  https://www.frontiersin.org/articles/10.3389/fgene.2013.00092/full
*  Jesús Mosterín - Wikipedia
See also: Jesús Mosterín (1994). "Mereology, Set Theory, and Biological Ontology". In D. Prawitz and D. Westerståhl (eds.): ... He tries to extend and make more precise the available conceptual framework of the discussion. Specifically, he shows the ... Mosterín has also tackled issues like the definition of life itself or the ontology of biological organisms and species. ... which combines the ontology of animals as paradigmatic individuals with the insights and results of biological research. This ...
  https://en.wikipedia.org/wiki/Jes%C3%BAs_Moster%C3%ADn
*  Scientific Programme
Robert Hoehndorf, Luke Slater, Paul N. Schofield and Georgios Gkoutos: Aber-OWL: a framework for ontology-based data access in ... Maryann Martone received her BA from Wellesley College in biological psychology and her Ph. D. in neuroscience in 1990 from the ... Robert Hoehndorf, Luke Slater, Paul N. Schofield and Georgios Gkoutos: Aber-OWL: a framework for ontology-based data access in ... How to query the database using the terms in the ontology.. - How to check consistency of the data sources w.r.t. the ontology. ...
  http://www.swat4ls.org/workshops/berlin2014/scientific-programme/
*  Integral Options Cafe: Towards a Liquid Self: How Time, Geography, and Life Experiences Reshape the Biological Identity
In this framework, it is difficult or even impossible to trace the initial/original cause of the entire, dynamic inflammaging ... ontology); (2) as a process, the self is dynamic because it varies depending on the internal (inflammatory, mostly) and ... Finally, our framework allows the set up of a variety of testable predictions, the most straightforward suggesting that the ... The IgG-G0 serum concentration is not only a putative marker of chronological age, but also of biological age. Indeed, a study ...
  http://integral-options.blogspot.com/2014/10/towards-liquid-self-how-time-geography.html