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*  Team:Lethbridge - 2013.igem.org
... to give useful protein products whose expression can be regulated by the pseudoknot's ability to induce ribosomal frameshifting ... to give useful protein products whose expression can be regulated by the pseudoknot's ability to induce ribosomal frameshifting ... to give useful protein products whose expression can be regulated by the pseudoknot's ability to induce ribosomal frameshifting ...
  http://2013.igem.org/wiki/index.php?title=Team:Lethbridge&diff=212705&oldid=211946
*  PRFdb: A database of computationally predicted eukaryotic programmed -1 ribosomal frameshift signals | BMC Genomics | Full Text
Dinman JD: Programmed Ribosomal Frameshifting Goes Beyond Viruses: Organisms from all three kingdoms use frameshifting to ... Brierley I: Ribosomal frameshifting on viral RNAs. J Gen Virol. 1995, 76: 1885-1892. 10.1099/0022-1317-76-8-1885.PubMedView ... Jacks T, Varmus HE: Expression of the Rous Sarcoma Virus pol gene by ribosomal frameshifting. Science. 1985, 230: 1237-1242. ... 1 ribosomal frameshifting. Nucleic Acids Res. 2005, 33: 1553-1563. 10.1093/nar/gki299.PubMedPubMed CentralView ArticleGoogle ...
  https://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-9-339
*  Team:Lethbridge - 2013.igem.org
... to give useful protein products whose expression can be regulated by the pseudoknot's ability to induce ribosomal frameshifting ... By introducing a standardized method of implementing programmed ribosomal frameshifts in synthetic gene networks, we could not ...
  http://2013.igem.org/wiki/index.php?title=Team:Lethbridge&oldid=235012
*  rian.ie - Results
1 ribosomal frameshifting due to features of the nascent peptide sequence that include the penultimate phenylalanine. This ... When these three codons in E. coli pheL mRNA are in the ribosomal E-, P- and A-sites, there is an unusually high level, 15%, of ... Two groups of phenylalanine biosynthetic operon leader peptides genes: a high level of apparently incidental frameshifting in ... Two groups of phenylalanine biosynthetic operon leader peptides genes: a high level of apparently incidental frameshifting in ...
  http://rian.ie/en/search/results/q/k+all%3Aregulation%3BL%3A3025%2C25%3B
*  Team:Lethbridge - 2013.igem.org
can be regulated by the pseudoknot's ability to induce ribosomal frameshifting. A software tool will also be used to zip ... parts to the iGEM community: programmed ribosomal frameshifting elements. . To do this, we have been working towards ... programmed ribosomal frameshifting elements. To do this, we have been working towards standardizing the PK401 pseudoknot for ... By introducing a standardized method of implementing programmed ribosomal frameshifts in synthetic gene networks, we could not ...
  http://2013.igem.org/wiki/index.php?title=Team:Lethbridge&diff=240829&oldid=211523
*  Recode2 :: Database of translational recoding events
RECODE is a database of the utilisation of ribosomal rameshifting, translational bypassing and mRNA specific codon redefinition ... 1 Frameshifting. Reviewed. Euplotes. ©2009-2017 UCC , The database is licenced under a Creative Commons Licence , Policy ...
  http://recode.ucc.ie/browse/organisms/Euplotes+octocarinatus
*  Translational frameshift - Wikipedia
Antizyme RNA frameshifting stimulation element Coronavirus frameshifting stimulation element DnaX ribosomal frameshifting ... Translational frameshifting or ribosomal frameshifting refers to an alternative process of protein translation. A protein is ... mutation HIV ribosomal frameshift signal Insertion sequence IS1222 ribosomal frameshifting element Recode database Ribosomal ... Frameshifting, Ribosomal at the US National Library of Medicine Medical Subject Headings (MeSH) Wise2 - aligns a protein ...
  https://en.wikipedia.org/wiki/Translational_frameshift
*  DnaX ribosomal frameshifting element - Wikipedia
The DnaX ribosomal frameshifting element is a RNA element found in the mRNA of the dnaX gene in E. coli. The dnaX gene has two ... Page for DnaX ribosomal frameshifting element at Rfam. ... loop required for Escherichia coli dnaX ribosomal frameshifting ... The gamma protein is synthesised due to programmed frameshifting and is shorter than tau. The two products of the dnaX gene are ... Blinkova, A; Burkart MF; Owens TD; Walker JR (1997). "Conservation of the Escherichia coli dnaX programmed ribosomal frameshift ...
  https://en.wikipedia.org/wiki/DnaX_ribosomal_frameshifting_element
*  Insertion sequence IS1222 ribosomal frameshifting element - Wikipedia
The ribosomal frameshifting element stimulates frameshifting which is known to be required for transposition. Mejlhede, N; ... The Insertion sequence IS1222 ribosomal frameshifting element is an RNA element found in the insertion sequence IS222. ... Page for Insertion sequence IS1222 ribosomal frameshifting element at Rfam. ... Licznar P; Prere MF; Wills NM; Gesteland RF; Atkins JF; Fayet O (2004). "−1 Frameshifting at a CGA AAG Hexanucleotide Site Is ...
  https://en.wikipedia.org/wiki/Insertion_sequence_IS1222_ribosomal_frameshifting_element
*  NS1′ of Flaviviruses in the Japanese Encephalitis Virus Serogroup Is a Product of Ribosomal Frameshifting and Plays a Role in...
1 ribosomal frameshifting in 6 to 8.5% of translation events (Fig. ​(Fig.3B).3B). Wild-type levels of frameshifting in these in ... NS1′ of Flaviviruses in the Japanese Encephalitis Virus Serogroup Is a Product of Ribosomal Frameshifting and Plays a Role in ... Mutational analysis of the "slippery-sequence" component of a coronavirus ribosomal frameshifting signal. J. Mol. Biol. 227:463 ... Mass spectrometry analysis of NS1 and NS1′ proteins shows that NS1′ is the product of −1 ribosomal frameshifting. (A) Amino ...
  http://pubmedcentralcanada.ca/pmcc/articles/PMC2812330/
*  X-linked Dyskeratosis Congenita and ribosomal frameshifting - Jonathan Dinman
2014) Ribosomal frameshifting in the CCR5 mRNA is regulated by miRNAs and the NMD pathway. Nature 512:265-9 ... X-linked Dyskeratosis Congenita and ribosomal frameshifting Dinman, Jonathan D. Ruggero, Davide University of Maryland College ... Advani, Vivek M; Dinman, Jonathan D (2016) Reprogramming the genetic code: The emerging role of ribosomal frameshifting in ... Belew, Ashton T; Dinman, Jonathan D (2015) Cell cycle control (and more) by programmed -1 ribosomal frameshifting: implications ...
  http://grantome.com/grant/NIH/R01-HL119439-01A1
*  Virology term 1 - positive strand viruses. Flashcards by Isabel Leach | Brainscape
Different ORFs: RNA stuttering and ribosomal frameshifting. Leaky scanning. Ribosomal shunting.. Non-AUG initiation. ... Change ORF - ribosomal frame-shifting. Stop-codon read-through. stop-carry on. ... eIF4G/eIF4A binds J-K domains and restructures region of ribosomal attachment via HEAT-1 domain of eIF4G. This promotes ... implication is that there is no universal mechanism of internal ribosomal entry.. ...
  https://www.brainscape.com/flashcards/virology-term-1-positive-strand-viruses-3612681/packs/5494219
*  Non-canonical Translation in Plant RNA Viruses
Ribosomal frameshifting Many plant viruses utilize programmed ribosomal frameshifting (PRS) to translate overlapping ORFs. This ... Paul C. P., Barry J. K., Dinesh-Kumar S. P., Brault V., Miller W. A. (2001). A sequence required for− 1 ribosomal frameshifting ... complementary interactions with ribosomal RNA or alteration of the ribosomal state (Atkins and Baranov, 2010). In ribosomal ... 2005). Crystal structure of a luteoviral RNA pseudoknot and model for a minimal ribosomal frameshifting motif†. Biochemistry 44 ...
  http://pubmedcentralcanada.ca/pmcc/articles/PMC5382211/
*  Frontiers | Unusual Fusion Proteins of HIV-1 | Microbiology
Tat-T/Vpt is produced upon programmed ribosomal frameshifting, and a Rev1-Vpu fusion protein is expressed due to a nucleotide ... Tat-T/Vpt is produced upon programmed ribosomal frameshifting, and a Rev1-Vpu fusion protein is expressed due to a nucleotide ... Upon Ribosomal Frameshifting. In addition to alternative splicing, ribosomal frameshifting represents another mechanism that ... Expression of a Tat-T Fusion Protein (Vpt) Upon Ribosomal Frameshifting. *Gene Rearrangements Enable the Expression of a Rev1- ...
  https://www.frontiersin.org/articles/10.3389/fmicb.2016.02152/full
*  TY1A-DR5 - Transposon Ty1-DR5 Gag polyprotein - Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) - TY1A...
Ribosomal frameshifting. ,p>This section provides links to proteins that are similar to the protein sequence(s) described in ... Note: Produced by +1 ribosomal frameshifting between codon Leu-435 and Gly-436 of the YDR316W-A ORF. ... alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative ... isoformsi produced by ribosomal frameshifting. Align. Add to basketAdded to basket ...
  http://www.uniprot.org/uniprot/P0CX65
*  gag-pol - Gag-Pol polyprotein - Human immunodeficiency virus type 2 subtype A (isolate ST) (HIV-2) - gag-pol gene & protein
Ribosomal frameshifting. ,p>This section provides links to proteins that are similar to the protein sequence(s) described in ... Ribosomal frameshifting at the gag-pol genes boundary occurs at low frequency and produces the Gag-Pol polyprotein. This ... alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative ... isoformsi produced by ribosomal frameshifting. Align. Add to basketAdded to basket ...
  http://www.uniprot.org/uniprot/P20876
*  rep - Replicase polyprotein 1ab - Simian hemorrhagic fever virus (SHFV) - rep gene & protein
Ribosomal frameshifting. ,p>This section provides links to proteins that are similar to the protein sequence(s) described in ... Note: Produced by -1 ribosomal frameshifting at the 1a-1b genes boundary. ... or ribosomal frameshifting. The information stored in this subsection is used to automatically construct alternative protein ... alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative ...
  http://www.uniprot.org/uniprot/Q68772
*  dnaX - DNA polymerase III subunit tau - Escherichia coli (strain K12) - dnaX gene & protein
Note: The production of the two protein products from this region is due to programmed ribosomal frameshifting. Frameshifting ... Ribosomal frameshifting. ,p>This section provides links to proteins that are similar to the protein sequence(s) described in ... Note: Formed by programmed ribosomal frameshifting to a premature stop codon in the -1 frame at codon 430, the last residue is ... "Programmed ribosomal frameshifting generates the Escherichia coli DNA polymerase III gamma subunit from within the tau subunit ...
  http://www.uniprot.org/uniprot/P06710-PRO_0000007361
*  gag - Gag polyprotein - Simian immunodeficiency virus (isolate CPZ GAB1) (SIV-cpz) - gag gene & protein
Ribosomal frameshifting. ,p>This section provides links to proteins that are similar to the protein sequence(s) described in ... Ribosomal frameshifting at the gag-pol genes boundary occurs at low frequency and produces the Gag-Pol polyprotein. This ... alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative ... isoformsi produced by ribosomal frameshifting. Align. Add to basketAdded to basket ...
  http://www.uniprot.org/uniprot/P17282
*  Gag polyprotein - Avian myeloblastosis virus
Ribosomal frameshiftingSAAS annotation. ,p>Information which has been generated by the UniProtKB automatic annotation system, ...
  http://www.uniprot.org/uniprot/Q86830
*  gag - Gag polyprotein - Human immunodeficiency virus 1 - gag gene & protein
Ribosomal frameshiftingSAAS annotation. ,p>Information which has been generated by the UniProtKB automatic annotation system, ...
  http://www.uniprot.org/uniprot/Q80628
*  Ornithine decarboxylase antizyme finder (OAF): Fast and reliable detection of antizymes with frameshifts in mRNAs | BMC...
Since standard sequence analysis pipelines are currently unable to recognise sites of programmed ribosomal frameshifting, ... highly accurate algorithms for ribosomal frameshifting prediction lie in the very nature of programmed ribosomal frameshifting ... 1 frameshifting during the synthesis of bacterial release factors 2 [22]. Indeed ribosomal frameshifting utilized by a group of ... Baranov PV, Gesteland RF, Atkins JF: P-site tRNA is a crucial initiator of ribosomal frameshifting. RNA (New York, NY) 2004, 10 ...
  https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-9-178
*  gag-pol - Gag-Pol polyprotein - Human immunodeficiency virus type 1 group M subtype D (isolate NDK) (HIV-1) - gag-pol gene &...
Ribosomal frameshifting. ,p>This section provides links to proteins that are similar to the protein sequence(s) described in ... Ribosomal frameshifting at the gag-pol genes boundary occurs at low frequency and produces the Gag-Pol polyprotein. This ... alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative ... isoformsi produced by ribosomal frameshifting. Align. Add to basketAdded to basket ...
  http://www.uniprot.org/uniprot/P18802