*  Translational frameshift - Wikipedia
DnaX ribosomal frameshifting element Frameshift mutation HIV ribosomal frameshift signal Insertion sequence IS1222 ribosomal ... The main distinction between frameshifts resulting from mutation and those resulting from ribosomal frameshifting is that the ... frameshifting element Recode database Ribosomal frameshift Ribosomal pause Slippery sequence Léger M, Dulude D, Steinberg SV, ... Translational frameshifting or ribosomal frameshifting refers to an alternative process of protein translation. A protein is ...
  https://en.wikipedia.org/wiki/Translational_frameshift
*  Ribosomal pause - Wikipedia
This can trigger ribosomal frameshifting. Translational frameshift HIV Ribosomal frameshift signal Coronavirus frameshifting ... Ribosomal Pausing at a Frameshifter RNA Pseudoknot Is Sensitive to Reading Phase but Shows Little Correlation with Frameshift ... Kinetics of Ribosomal Pausing during Programmed −1 Translational Frameshifting. Mol. Cell. Biol. February 2000 vol. 20 no. 4 ... stimulation element Ribosomal frameshift Jha SS, Komar AA. Isolation of ribosome bound nascent polypeptides in vitro to ...
  https://en.wikipedia.org/wiki/Ribosomal_pause
*  Ribosomal frameshift - Wikipedia
Translational frameshift HIV Ribosomal frameshift signal Coronavirus frameshifting stimulation element Ribosomal pause ... "Ribosomal Frameshifting". Viralzone.expasy.org. Swiss Institute of Bioinformatics. Retrieved 4 December 2014. "Ribosomal ... This form of frameshifting is utilized by influenza A, among others. Other viruses that use ribosomal frameshifting for ... This frameshift occurs about 10% of the time, allowing differential protein expression. This form of frameshifting is used by ...
  https://en.wikipedia.org/wiki/Ribosomal_frameshift
*  PEG10 - Wikipedia
"Characterization of the frameshift signal of Edr, a mammalian example of programmed -1 ribosomal frameshifting". Nucleic Acids ... 1 programmed ribosomal frameshifting". Nucleic Acids Research. 29 (19): 4079-88. doi:10.1093/nar/29.19.4079. PMC 60235 . PMID ... The longer isoform is the result of -1 translational frameshifting that is also seen in some retroviruses. Expression of these ...
  https://en.wikipedia.org/wiki/PEG10
*  PRFdb: A database of computationally predicted eukaryotic programmed -1 ribosomal frameshift signals | BMC Genomics | Full Text
Characterization of the frameshift signal of Edr, a mammalian example of programmed -1 ribosomal frameshifting. Nucleic Acids ... Plant EP, Wang P, Jacobs JL, Dinman JD: A programmed -1 ribosomal frameshift signal can function as a cis-acting mRNA ... Dinman JD: Programmed Ribosomal Frameshifting Goes Beyond Viruses: Organisms from all three kingdoms use frameshifting to ... PRFdb: A database of computationally predicted eukaryotic programmed -1 ribosomal frameshift signals. ...
  https://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-9-339
*  HIV ribosomal frameshift signal - Wikipedia
... they concluded that the compound functions by enhancing the frameshifting efficiency of the HIV-1 ribosomal frameshift signal, ... The HIV-1 virus requires a programmed -1 ribosomal frameshift signal (the HIV-1 Ribosomal Frameshift Signal) for the expression ... The dependence of the HIV-1 virus on this ribosomal frameshift signal has generated interest in the frameshift as a target for ... 1 frameshift. Endogenous cellular factors may also modulate the HIV-1 ribosomal frameshift signal, as it has been reported that ...
  https://en.wikipedia.org/wiki/HIV_ribosomal_frameshift_signal
*  DnaX ribosomal frameshifting element - Wikipedia
"Conservation of the Escherichia coli dnaX programmed ribosomal frameshift signal in Salmonella typhimurium". J Bacteriol. 179 ( ... The DnaX ribosomal frameshifting element is a RNA element found in the mRNA of the dnaX gene in E. coli. The dnaX gene has two ... Page for DnaX ribosomal frameshifting element at Rfam. ... loop required for Escherichia coli dnaX ribosomal frameshifting ... The gamma protein is synthesised due to programmed frameshifting and is shorter than tau. The two products of the dnaX gene are ...
  https://en.wikipedia.org/wiki/DnaX_ribosomal_frameshifting_element
*  Frontiers | Unusual Fusion Proteins of HIV-1 | Microbiology
Tat-T/Vpt is produced upon programmed ribosomal frameshifting, and a Rev1-Vpu fusion protein is expressed due to a nucleotide ... Tat-T/Vpt is produced upon programmed ribosomal frameshifting, and a Rev1-Vpu fusion protein is expressed due to a nucleotide ... This ribosomal frameshift signal (highlighted by an asterisk) enables the synthesis of the Gag/Pol polyprotein instead of Gag ... Upon Ribosomal Frameshifting. In addition to alternative splicing, ribosomal frameshifting represents another mechanism that ...
  https://www.frontiersin.org/articles/10.3389/fmicb.2016.02152/full
*  Viral and Cellular mRNA Translation in Coronavirus-Infected Cells
1 ribosomal frameshifting is an essential step in CoV replication.. The signals required for −1 ribosomal frameshifting in the ... CoV frameshift signals characterized previously have −1 ribosomal frameshift efficiencies in the range of 20-45% (Baranov et al ... An efficient ribosomal frame-shifting signal in the polymerase-encoding region of the coronavirus IBV. EMBO J. 1987;6:3779-3785 ... Characterization of an efficient coronavirus ribosomal frameshifting signal: requirement for an RNA pseudoknot. Cell. 1989;57: ...
  http://pubmedcentralcanada.ca/pmcc/articles/PMC5388242/
*  X-linked Dyskeratosis Congenita and ribosomal frameshifting - Jonathan Dinman
2016) Structural and Functional Characterization of Programmed Ribosomal Frameshift Signals in West Nile Virus Strains Reveals ... 2014) Ribosomal frameshifting in the CCR5 mRNA is regulated by miRNAs and the NMD pathway. Nature 512:265-9 ... X-linked Dyskeratosis Congenita and ribosomal frameshifting Dinman, Jonathan D. Ruggero, Davide University of Maryland College ... Advani, Vivek M; Dinman, Jonathan D (2016) Reprogramming the genetic code: The emerging role of ribosomal frameshifting in ...
  http://grantome.com/grant/NIH/R01-HL119439-01A1
*  Non-canonical Translation in Plant RNA Viruses
1 ribosomal frameshifting located four kilobases downstream of the frameshift site. J. Mol. Biol. 310, 987-999. 10.1006/jmbi. ... Such signals could be RNA secondary structures, complementary interactions with ribosomal RNA or alteration of the ribosomal ... Ribosomal frameshifting Many plant viruses utilize programmed ribosomal frameshifting (PRS) to translate overlapping ORFs. This ... 2005). Crystal structure of a luteoviral RNA pseudoknot and model for a minimal ribosomal frameshifting motif†. Biochemistry 44 ...
  http://pubmedcentralcanada.ca/pmcc/articles/PMC5382211/
*  Coronavirus frameshifting stimulation element - Wikipedia
Translational frameshift Ribosomal frameshift Nucleic acid tertiary structure Transposable element Slippery sequence Baranov, ... the coronavirus packaging signal and the coronavirus 3' UTR pseudoknot. During protein synthesis, rapidly changing conditions ... "Programmed ribosomal frameshifting in decoding the SARS-CoV genome". Virology. 332 (2): 498-510. doi:10.1016/j.virol.2004.11. ... stimulation element is a conserved stem-loop of RNA found in coronaviruses that can promote ribosomal frameshifting. Such RNA ...
  https://en.wikipedia.org/wiki/Coronavirus_frameshifting_stimulation_element
*  Publications | Jinah Choi
Synthesis of a novel hepatitis C virus protein by ribosomal frameshift. EMBO Journal, 20(14), 3840-3848. ... Choi, J., Liu, R.M., Forman, H. J. (1997). Adaptation to oxidative stress: protection of signaling in rat lung epithelial L2 ... Triple decoding of hepatitis C virus core protein coding sequence by translational frameshifting. Molecular and Cellular ... Kaul, N., Choi, J., Forman, H. J. (1998). Transmembrane redox signaling activates NF-kB in macrophages. Free Radical Biology in ...
  http://faculty.ucmerced.edu/jchoi/node/235
*  Joseph (Jody) Puglisi | Stanford Medicine Profiles
... moving the signal sequence away from SRP on the ribosomal surface. Later studies drew this simple model into question, ... Ribosomes that frameshift into the -1 frame are characterized by a tenfold longer pause in elongation compared to non- ... Dynamic pathways of-1 translational frameshifting NATURE Chen, J., Petrov, A., Johansson, M., Tsai, A., O'Leary, S. E., Puglisi ... we labeled human 40S ribosomal subunits with a fluorescent SNAP-tag at ribosomal protein eS25 (RPS25). The resulting ribosomal ...
  https://med.stanford.edu/profiles/joseph-puglisi
*  Glycine Receptors - New β-secretase inhibitors for treatment of Alzheimer's disease
Programmed ?1 ribosomal frameshifting (PRF) and prevent codon readthrough are two. Programmed ?1 ribosomal frameshifting (PRF) ... pseudoknots encompassing the frameshift site. A book mechanism is suggested for possible participation from the elaborated ... ribosomes can handle performing some non-standard decoding occasions which so long as appropriate signals can be found within ... These uncommon events are known as recoding [1, 2]. Two of the main recoding systems are designed ?1 ribosomal frameshifting ( ...
  http://healthyguide.info/category/glycine-receptors/
*  NS1′ of Flaviviruses in the Japanese Encephalitis Virus Serogroup Is a Product of Ribosomal Frameshifting and Plays a Role in...
1 ribosomal frameshift.. If the NS1′ protein produced during KUNV infection is the result of a ribosomal frameshift, then one ... Mutational analysis of the "slippery-sequence" component of a coronavirus ribosomal frameshifting signal. J. Mol. Biol. 227:463 ... 1 ribosomal frameshift (Fig. ​(Fig.3A).3A). Therefore, frameshifting results in a larger (~101-kDa) translation product while ... 1 ribosomal frameshifting in 6 to 8.5% of translation events (Fig. ​(Fig.3B).3B). Wild-type levels of frameshifting in these in ...
  http://pubmedcentralcanada.ca/pmcc/articles/PMC2812330/
*  WebLogo displaying conserved sequences associated with | Open-i
WebLogo displaying conserved sequences associated with frameshift sites.Sizes of letters denote information content, or ... High frequency of +1 programmed ribosomal frameshifting in Euplotes octocarinatus. Wang R, Xiong J, Wang W, Miao W, Liang A - ... The slippery site of -1 PRF has been well characterized, whereas the +1 PRF signal and the mechanism involved in +1 PRF remain ... The analysis is based on the alignment of 30 bp preceding and following the frameshift motif from 4,545 predicted slippery ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC4759687_srep21139-f4&req=4
*  The complete genome sequence, organization and affinities of carrot red leaf virus, Archives of Virology | 10.1007/s00705-005...
Differential response to frameshift signals in eukaryotic and prokaryotic translational systems.. Garcia, A; Vanduin, J; Pleij ... Structure, stability and function of RNA pseudoknots involved in stimulating ribosomal frameshifting. ... by frameshift read-through to yield a polypeptide (P1 + P2) with a calculated ... Mr of 116.9 kDa. Frameshifting is predicted at a "shifty" sequence (GGGAAAC; ...
  https://www.deepdyve.com/lp/springer_journal/the-complete-genome-sequence-organization-and-affinities-of-carrot-red-eolEcy9sVU
*  Improvement of reading frame maintenance is a common function for several tRNA modifications | The EMBO Journal
Brierley I, Meredith MR, Bloys AJ and Hagervall TG (1997) Expression of a coronavirus ribosomal frameshift signal in ... Fu C and Parker J (1994) A ribosomal frameshifting error during translation of the argI mRNA of Escherichia coli. Mol Gen Genet ... The frequency of frameshifting was also lower in the latter case (Figure 4C). Thus, the observed frameshifts resulted in an ... Surprisingly, the degree of frameshifting was similar (Figure 4B). In the case of Glu‐tRNA, the +1 frameshift resulted in a ...
  http://emboj.embopress.org/content/20/17/4863
*  rian.ie - Results
1 ribosomal frameshifting at the 3' end of the first of two partially overlapping ORFs. The frameshift is the sensor and ... A nascent peptide signal responsive to endogenous levels of polyamines acts to stimulate regulatory frameshifting on antizyme ... A nascent peptide signal responsive to endogenous levels of polyamines acts to stimulate regulatory frameshifting on antizyme ... Except for Saccharomyces cerevisiae antizyme mRNA, the frameshift site alone only supports low levels of frameshifting. The ...
  http://rian.ie/en/search/results/q/k+all%3Aregulation%3BL%3A3100%2C25%3B
*  Coronaviruses and their Diseases | SpringerLink
A Ribosomal Frameshift Signal in the Polymerase-Encoding Region of the IBV Genome ... Intriguingly, ribosomal frameshifting is exhibited within the mRNA coding for these polypeptides. The cloning/sequencing phase ...
  https://link.springer.com/book/10.1007/978-1-4684-5823-7
*  Overview of the proteins produced by normal translation | Open-i
1 frameshifting for one gene typical of each of the 69 clusters of genes selected on the basis of ... Bottom Line: Depending on the signal, the frameshifting frequency can vary over a wide range, from less than 1% to more than 50 ... Analysis of tetra- and hepta-nucleotides motifs promoting -1 ribosomal frameshifting in Escherichia coli. ... It appears that the size of the gene containing the frameshift signal is very variable, since it can code for a 44-1426 amino ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC4066793_gku386fig8&req=4
*  Bijective codon transformations show genetic code symmetries centered on cytosine's coding properties | SpringerLink
Seligmann H (2007) Cost minimization of ribosomal frameshifts. J Theor Biol 249(1):162-167PubMedCrossRefGoogle Scholar ... Ahmed A, Frey G, Michel CJ (2007) Frameshift signals in genes associated with the circular code. Silico Biol 7(2):155-168Google ... Firth AE, Blitvich BJ, Wills NM, Miller CL, Atkins JF (2010) Evidence for ribosomal frameshifting and a novel overlapping gene ... O'Connor M (1998) tRNA imbalance promotes -1 frameshifting via near-cognate decoding. J Mol Biol 279(4):727-736PubMedCrossRef ...
  https://link.springer.com/article/10.1007/s12064-017-0258-x
*  Discovery and analysis of the first endogenous lentivirus | PNAS
6b ), (iii) a ribosomal frameshifting site at the start of pol (SI Fig. 6c ), (iv) a dUTPase between RNaseH and Integrase in ... For example, one element (present on AAGW01148698) has five in-frame stop codons, 11 frameshift mutations (in coding regions), ... but we did identify putative nuclear localization and nuclear export signals (34), which are underlined in SI Fig. 5. ... containing numerous in-frame stop codons and frameshift mutations. ...
  http://www.pnas.org/content/104/15/6261
*  neur - Protein neuralized - Drosophila melanogaster (Fruit fly) - neur gene & protein
... or ribosomal frameshifting. The information stored in this subsection is used to automatically construct alternative protein ... regulation of Notch signaling pathway Source: FlyBase ,p>Inferred from Mutant Phenotype,/p> ,p>Describes annotations that are ... Reason: Frameshift at positions 406, 518, 554 and 709.Curated. Experimental Info. Feature key. Position(s). DescriptionActions ... or ribosomal frameshifting. The information stored in this subsection is used to automatically construct alternative protein ...
  http://www.uniprot.org/uniprot/P29503