*  S1 - oi
... and to remove single-stranded extensions from DNA to produce blunt ends (see restriction endonucleases). ... is a fungal nuclease that degrades single-stranded nucleic acids and is preferentially active against DNA. Used experimentally ... to analyse the structure of DNA:RNA hybrids (S1 nuclease mapping, Berk-Sharp technique), ...
  http://oxfordindex.oup.com/view/10.1093/oi/authority.20110803100435272
*  IDT Oligo Analyzer | ProgrammableWeb
Integrated DNA Technologies (IDT) is a company that manufactures and sells oligonucleotides (short, single-stranded DNA or RNA ...
  https://www.programmableweb.com/api/idt-oligo-analyzer/frameworks
*  Jacobs:Protocol 10 bp DNA Ladder - OpenWetWare
Generating a single-stranded 10 nucleotide ladder: * To 5 μl of 10 bp DNA Ladder, add an equal volume of denaturing solution [ ... Upon denaturing of the 10 bp DNA Ladder with formamide and subsequent gel electrophoresis, a set of single-stranded ... The double-stranded ladder can be visualized on 4% to 5% agarose gels after ethidium bromide staining. The single-stranded ... thirty-three 10-bp repeats plus a fragment at 1668 bp and is suitable for sizing both double-stranded and single-stranded DNA ...
  https://openwetware.org/wiki/Jacobs:Protocol_10_bp_DNA_Ladder
*  Reverse Transcriptases | NEB
Reverse transcriptases can synthesize a complementary DNA strand initiating from a primer using RNA (cDNA synthesis) or single- ... These enzymes can synthesize a complementary DNA strand initiating from a primer using RNA (cDNA synthesis) or single-stranded ... Ladder L is the Quick-Load® 2-Log DNA Ladder (NEB #N0469).. Robust cDNA Synthesis is Achieved Even with Longer Templates Jurkat ... Ladder L is the 2-Log DNA Ladder (NEB #N0469).. Generate high quality cDNA even with very low amounts of starting RNA. ...
  https://www.neb.com/products/rna-reagents/reverse-transcriptases-and-rt-pcr/reverse-transcriptases-and-rt-pcr/reverse-transcriptases
*  golden ratio and numbers in DNA- CODEX BIOGENESIS: les 13 codes de l'ADN (13 codes of DNA): October 2013: the first proof that...
Codon populations in single-stranded whole human genome DNA Are fractal and fine-tuned by the Golden Ratio 1.618.. October 2010 ... October 2013: the first proof that complete human genome codon triplets population DNA single strand is a WHOLE: the 3 genomic ... October 2013: the first proof that complete human genome codon triplets population DNA single strand is a WHOLE: the 3 genomic ... We show here how codon populations forming the single-stranded DNA sequences can constitute a critical approach to the ...
  http://golden-ratio-in-dna.blogspot.ca/2013/08/october-2013-first-proof-that-complete.html
*  Method of targeting DNA - Patent # 5460941 - PatentGenius
... with a single-stranded DNA molecule sufficiently complementary to one strand of the double-stranded DNA molecule to hybridize ... contacting is effected under conditions such that the single-stranded DNA molecule hybridizes to the double-stranded molecule ... the three-stranded DNA molecule. The method comprises:contacting a recombination protein with a double-stranded DNA molecule ... molecule wherein each strand of the three-stranded DNA molecule is hybridized (that is, non-covalently bound) to at least one ...
  http://www.patentgenius.com/patent/5460941.html
*  Single Stranded DNA Sequencing
... William R. Morgan wmorgan at ACS.WOOSTER.EDU Mon Sep 13 22:10:17 EST 1993 *Previous message: ... Picard cooperj at nhlbi.nih.gov (John Cooper) asks: ,Does any one know if single stranded sequencing is really superior to ds , ... Although 'CsCl-prepped' DNA is obviously the best, for preparing multiple templates, we DNA prepared with the normal alkaline- ... sequencing? I think that you get the best consistency with single-strand templates. DS templates exhibit more variability. It's ...
  http://www.bio.net/bionet/mm/methods/1993-September/007542.html
*  Multicopy single-stranded DNA - Wikipedia
Multicopy single-stranded DNA (msDNA) is a type of extrachromosomal satellite DNA that consists of a single-stranded DNA ... further extension of the DNA strand presents a problem: as DNA synthesis progresses, the bulky RNA strand extending from the 3 ... Hsu MY, Inouye M, Inouye S (December 1990). "Retron for the 67-base multicopy single-stranded DNA from Escherichia coli: a ... Yee T, Furuichi T, Inouye S, Inouye M (August 1984). "Multicopy single-stranded DNA isolated from a gram-negative bacterium, ...
  https://en.wikipedia.org/wiki/Multicopy_single-stranded_DNA
*  RCSB PDB - Protein Feature View - Single-stranded DNA-binding protein DdrB - Q9RY80 (DDRB DEIRA)
Plays a role in DNA repair and genome reconstitution in a RecA-independent process. Required for recovery from severe genomic ... Homopentamer arranged in a ring-structure; DNA binds between subunits and along the top of the ring. The pentamers self- ... The disordered C-terminus of DdrB may mediate interactions with other proteins important for DNA damage recovery. UniProt ...
  http://www.rcsb.org/pdb/protein/Q9RY80
*  Single-strand DNA-binding protein - Wikipedia
... that binds to single-stranded regions of deoxyribonucleic acid (DNA). Single-stranded DNA is produced during all aspects of DNA ... Binding of single-stranded DNA to the tetramer can occur in different "modes", with SSB occupying different numbers of DNA ... It has a structure of three beta-strands to a single six-stranded beta-sheet to form a protein dimer. DNA-binding protein ... "Crystal structure of the homo-tetrameric DNA binding domain of Escherichia coli single-stranded DNA-binding protein determined ...
  https://en.wikipedia.org/wiki/Single-strand_DNA-binding_protein
*  Max Planck Team Reports Single-Stranded NGS Protocol for Ancient DNA | GenomeWeb
... a next-generation sequencing protocol that prepares libraries from single-stranded DNA as opposed to double-stranded DNA, a ... method that is particularly amenable to sequencing ancient DNA. ... from single-stranded DNA as opposed to double-stranded DNA, a ... Max Planck Team Reports Single-Stranded NGS Protocol for Ancient DNA. Apr 09, 2013 ... Home » Max Planck Team Reports Single-Stranded NGS Protocol for Ancient DNA ...
  https://www.genomeweb.com/sequencing/max-planck-team-reports-single-stranded-ngs-protocol-ancient-dna
*  The Fitness Effects of Random Mutations in Single-Stranded DNA and RNA Bacteriophages
Here, we characterize the fitness effects of random mutations in DNA viruses and compare them with those found in RNA viruses, ...
  http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1000742
*  Immunologic Detection of Single-Stranded DNA in Adeno-Associated Satellite Virions | The Journal of Immunology
Immunologic Detection of Single-Stranded DNA in Adeno-Associated Satellite Virions. E.V. Barnett, K. Torikai and H.D. Mayor ... Immunologic Detection of Single-Stranded DNA in Adeno-Associated Satellite Virions Message Subject (Your Name) has forwarded a ... Double diffusion experiments with antibodies to single-stranded (s-s) DNA confirmed physicochemical data that adeno-associated ... satellite virions contain s-s DNA but the DNA extracted from such virions is double-stranded. Positive immunologic reactions of ...
  http://www.jimmunol.org/content/105/4/824
*  Reactome | DNA polymerase delta polymerizes DNA across single stranded gap
DNA Repair (Mus musculus) * * Mismatch Repair (Mus musculus) * Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta) (Mus ... DNA polymerase delta polymerizes DNA across single stranded gap (Mus musculus) * Mismatch repair (MMR) directed by MSH2:MSH6 ( ... DNA polymerase delta polymerizes DNA across single stranded gap Stable Identifier R-MMU-5358579 ...
  http://www.reactome.org/content/detail/R-MMU-5358579
*  Biology | Free Full-Text | A Comparison of Two Single-Stranded DNA Binding Models by Mutational Analysis of APOBEC3G
... but none reveal how this enzyme binds to substrate single-stranded DNA. Here, we constructed a panel of APOBEC3G amino acid ... APOBEC3G is the best known of several DNA cytosine deaminases that function to inhibit the replication of parasitic genetic ... single-stranded DNA; structure-guided mutagenesis APOBEC3G; DNA cytosine deamination; HIV restriction; single-stranded DNA; ... The overall data set is most consistent with the Brim model for single-stranded DNA binding by APOBEC3G. View Full-Text ...
  http://mdpi.com/2079-7737/1/2/260/xml
*  Bürgerwelle News: Single-strand DNA breaks in human hair root cells exposed to mobile phone radiation
Single-strand DNA breaks in human hair root cells exposed to mobile phone radiation. Int J Radiat Biol. 2012 Feb 21. [Epub ... Single-strand DNA breaks of hair root cells from the samples were determined using the 'comet assay'.. Results: The data showed ... single-strand DNA breaks in cells of hair roots close to the phone. Comparing the 15-min and 30-min data using the paired t- ... from a mobile phone caused a significant increase in DNA single-strand breaks in human hair root cells located around the ear ...
  http://www.buergerwelle.de:8080/helma/twoday/bwnews/stories/3732/
*  Sequence Similarity - 1PFS: SOLUTION NMR STRUCTURE OF THE SINGLE-STRANDED DNA BINDING PROTEIN OF THE FILAMENTOUS...
... similarity to other proteins binding to single-stranded nucleic acids. ... Solution structure of the single-stranded DNA binding protein of the filamentous Pseudomonas phage Pf3: ... PF3 SINGLE-STRANDED DNA BINDING PROTEIN protein, length: 78 (BLAST) Sequence Similarity Cutoff. Rank. Chains in Cluster. ... SOLUTION NMR STRUCTURE OF THE SINGLE-STRANDED DNA BINDING PROTEIN OF THE FILAMENTOUS PSEUDOMONAS PHAGE PF3, MINIMIZED AVERAGE ...
  http://www.rcsb.org/pdb/explore/sequenceCluster.do?structureId=1PFS&entity=1&seqid=95
*  Structure Cluster - 1CBV: AN AUTOANTIBODY TO SINGLE-STRANDED DNA: COMPARISON OF THE THREE-DIMENSIONAL STRUCTURES OF...
An autoantibody to single-stranded DNA: comparison of the three-dimensional structures of the unliganded Fab and a ... AN AUTOANTIBODY TO SINGLE-STRANDED DNA: COMPARISON OF THE THREE-DIMENSIONAL STRUCTURES OF THE UNLIGANDED FAB AND A ... Description: DNA (5'-D(*TP*TP*T)-3') dna , Length: 3 This entity is NOT a polypeptide entity and therefore cannot be considered ...
  http://www.rcsb.org/pdb/explore/structureCluster.do?structureId=1CBV
*  Highly specific gene knockins of long sequences using CRISPR/Cas9 and a single-stranded DNA donor template
... *Efficient ... production of long single-stranded DNA (ssDNA) donor templates for gene editing,, ... Reduced toxicity of ssDNA as compared to double-stranded DNA (dsDNA) when electroporated into target cells,, ... The method involves generating a double-stranded donor template using PCR where only one of the strands is phosphorylated at ...
  http://www.clontech.com/CA/Products/Genome_Editing/CRISPR_Cas9/Technical_Notes/Long_ssDNA_for_gene_knockins
*  Genetic analysis of RPA single-stranded DNA binding protein in Haloferax volcanii - Nottingham ePrints
The roles of RPA include stabilising and protecting single- stranded DNA from nuclease degradation during DNA replication and ... Stroud, A. L. (2012) Genetic analysis of RPA single-stranded DNA binding protein in Haloferax volcanii. PhD thesis, University ... Replication protein A (RPA) is a single-stranded DNA-binding protein that is present in all three domains of life. ... To achieve this, RPA uses an oligosaccharide-binding fold (OB fold) to bind single- stranded DNA.. Haloferax volcanii encodes ...
  http://eprints.nottingham.ac.uk/12623/
*  Forum MikroskopieTrends ´16: Von der Probe zum digitalen Modell « Quantum Related Diseases Research Group (QRDRG)
Rieper, Anders and Vedral modelled the electron clouds of nucleic acids in a single strand of DNA as a chain of coupled quantum ... Single blood test screens for eight cancer types. 18. Jan. 2018. Researchers have developed a single blood test that screens ... Scientists have now found that just how big a role Myc plays is determined by a distant section of DNA that contains a cluster ... A small subset of patients with tumors that bear mutations in a gene in the basic packaging of DNA (known as histone mutations ...
  http://diseasesresearchgroup.xonl.de/2016/12/01/forum-mikroskopietrends-16-von-der-probe-zum-digitalen-modell/