*  S1 - oi
... and to remove single-stranded extensions from DNA to produce blunt ends (see restriction endonucleases). ... is a fungal nuclease that degrades single-stranded nucleic acids and is preferentially active against DNA. Used experimentally ... to analyse the structure of DNA:RNA hybrids (S1 nuclease mapping, Berk-Sharp technique), ...
  http://oxfordindex.oup.com/view/10.1093/oi/authority.20110803100435272
*  Modeling
... replicated single-stranded DNA and formed virus capsids and finally concentration of viral particles are simulated using ... Real-time single-molecule imaging of the infection pathway of an adeno-associated virus. Science (New York, N.Y.), 294(5548), ...
  http://2010.igem.org/Team:Freiburg_Bioware/Modeling
*  messenger rna
... a single-stranded molecule of RNA that is synthesized in the nucleus from a DNA template and then enters the cytoplasm, where ... transcribed from a single strand of DNA, that carries genetic information required for protein synthesis from DNA to the ... a single-stranded molecule of RNA that is synthesized in the nucleus from a DNA template and then enters the cytoplasm, where ...
  http://www.dictionary.com/browse/messenger-rna
*  IDT Oligo Analyzer | ProgrammableWeb
Integrated DNA Technologies (IDT) is a company that manufactures and sells oligonucleotides (short, single-stranded DNA or RNA ...
  https://www.programmableweb.com/api/idt-oligo-analyzer/frameworks
*  Difference between revisions of "CH391L/S13/BioBricksAndRegistry" - OpenWetWare
... overhanging edges of single-stranded DNA that your restriction enzymes left behind will match up to make double stranded DNA. ... Opens the instructions for preparing and sending DNA to the Registry.. *Allows you to use quick analysis of a single sequence ... DNA repositories. This icon opens up the DNA Part Repositories page, which contains a list of (and a convenient search feature ... A terminator is a section of DNA that marks the end of gene or operon on genomic DNA for transcription. ...
  https://openwetware.org/wiki/?title=CH391L/S13/BioBricksAndRegistry&diff=695950&oldid=695949
*  Make a d-strand from ss oligonucleotide ?
My question is if some methods can be used to synthesis such small ds DNA : fragment (20bp) from the single strand ... For sure, the synthesis of a 20-mer of : oligonucleotide is much cheaper than that of two strands to make a ds DNA. : ... you could design a DNA hairpin structure which would fold back on itself to give you a double-stranded region (really just a ... Make a d-strand from ss oligonucleotide ?. Dave.Segal ds1539 at u.cc.utah.edu Fri Nov 26 22:22:12 EST 1993 *Previous message: ...
  http://www.bio.net/bionet/mm/methods/1993-November/009518.html
*  High-affinity RNA binding by a hyperthermophilic single-stranded DNA-binding protein
Single-stranded DNA-binding proteins (SSBs), including replication protein A (RPA) in eukaryotes, play a central role in DNA ... High-affinity RNA binding by a hyperthermophilic single-stranded DNA-binding protein. ... High-affinity RNA binding by a hyperthermophilic single-stranded DNA-binding protein ' Extremophiles , vol 21 , no. 2 , pp. 369 ... These features may represent an adaptation to a hyperthermophilic lifestyle, where DNA and RNA damage is a more frequent event. ...
  https://research-repository.st-andrews.ac.uk/handle/10023/10082
*  Jacobs:Protocol 10 bp DNA Ladder - OpenWetWare
Generating a single-stranded 10 nucleotide ladder: * To 5 μl of 10 bp DNA Ladder, add an equal volume of denaturing solution [ ... Upon denaturing of the 10 bp DNA Ladder with formamide and subsequent gel electrophoresis, a set of single-stranded ... The double-stranded ladder can be visualized on 4% to 5% agarose gels after ethidium bromide staining. The single-stranded ... thirty-three 10-bp repeats plus a fragment at 1668 bp and is suitable for sizing both double-stranded and single-stranded DNA ...
  https://openwetware.org/wiki/Jacobs:Protocol_10_bp_DNA_Ladder
*  RADX interacts with singlestranded DNA to promote replication fork stability | EMBO Reports
Singlestranded DNA (ssDNA) regions form as an intermediate in many DNA‐associated transactions. Multiple cellular proteins ... RADX interacts with singlestranded DNA to promote replication fork stability. Lisa Schubert, Teresa Ho, Saskia Hoffmann, Peter ... Our findings establish RADX as an important component of cellular pathways that promote DNA replication integrity under basal ... The balance between RADX and other ssDNA‐binding proteins is important for DNA replication integrity. ...
  http://embor.embopress.org/content/early/2017/10/11/embr.201744877.share
*  Reverse Transcriptases | NEB
Reverse transcriptases can synthesize a complementary DNA strand initiating from a primer using RNA (cDNA synthesis) or single- ... These enzymes can synthesize a complementary DNA strand initiating from a primer using RNA (cDNA synthesis) or single-stranded ... Ladder L is the Quick-Load® 2-Log DNA Ladder (NEB #N0469).. Robust cDNA Synthesis is Achieved Even with Longer Templates Jurkat ... Ladder L is the 2-Log DNA Ladder (NEB #N0469).. Generate high quality cDNA even with very low amounts of starting RNA. ...
  https://www.neb.com/products/rna-reagents/reverse-transcriptases-and-rt-pcr/reverse-transcriptases-and-rt-pcr/reverse-transcriptases
*  PCR enhancers
Is this a single-stranded DNA binding protein? What is the difference with , USB's single-stranded DNA binding protein or GP 32 ...
  http://www.bio.net/bionet/mm/methods/1992-September/002105.html
*  Method of targeting DNA - Patent # 5460941 - PatentGenius
... with a single-stranded DNA molecule sufficiently complementary to one strand of the double-stranded DNA molecule to hybridize ... contacting is effected under conditions such that the single-stranded DNA molecule hybridizes to the double-stranded molecule ... the three-stranded DNA molecule. The method comprises:contacting a recombination protein with a double-stranded DNA molecule ... molecule wherein each strand of the three-stranded DNA molecule is hybridized (that is, non-covalently bound) to at least one ...
  http://www.patentgenius.com/patent/5460941.html
*  Single Stranded DNA Sequencing
... William R. Morgan wmorgan at ACS.WOOSTER.EDU Mon Sep 13 22:10:17 EST 1993 *Previous message: ... Picard cooperj at nhlbi.nih.gov (John Cooper) asks: ,Does any one know if single stranded sequencing is really superior to ds , ... Although 'CsCl-prepped' DNA is obviously the best, for preparing multiple templates, we DNA prepared with the normal alkaline- ... sequencing? I think that you get the best consistency with single-strand templates. DS templates exhibit more variability. It's ...
  http://www.bio.net/bionet/mm/methods/1993-September/007542.html
*  Multicopy single-stranded DNA - Wikipedia
Multicopy single-stranded DNA (msDNA) is a type of extrachromosomal satellite DNA that consists of a single-stranded DNA ... further extension of the DNA strand presents a problem: as DNA synthesis progresses, the bulky RNA strand extending from the 3 ... Hsu MY, Inouye M, Inouye S (December 1990). "Retron for the 67-base multicopy single-stranded DNA from Escherichia coli: a ... Yee T, Furuichi T, Inouye S, Inouye M (August 1984). "Multicopy single-stranded DNA isolated from a gram-negative bacterium, ...
  https://en.wikipedia.org/wiki/Multicopy_single-stranded_DNA
*  Addgene: AID mediates hypermutation by deaminating single stranded DNA.
AID mediates hypermutation by deaminating single stranded DNA. Dickerson SK, Market E, Besmer E, Papavasiliou FN. J Exp Med. ... The transcription elongation complex directs activation-induced cytidine deaminase-mediated DNA deamination. Besmer E, Market E ...
  http://www.addgene.org/browse/article/1665/
*  RCSB PDB - Protein Feature View - Single-stranded DNA-binding protein DdrB - Q9RY80 (DDRB DEIRA)
Plays a role in DNA repair and genome reconstitution in a RecA-independent process. Required for recovery from severe genomic ... Homopentamer arranged in a ring-structure; DNA binds between subunits and along the top of the ring. The pentamers self- ... The disordered C-terminus of DdrB may mediate interactions with other proteins important for DNA damage recovery. UniProt ...
  http://www.rcsb.org/pdb/protein/Q9RY80
*  Single-strand DNA-binding protein - Wikipedia
... that binds to single-stranded regions of deoxyribonucleic acid (DNA). Single-stranded DNA is produced during all aspects of DNA ... Binding of single-stranded DNA to the tetramer can occur in different "modes", with SSB occupying different numbers of DNA ... It has a structure of three beta-strands to a single six-stranded beta-sheet to form a protein dimer. DNA-binding protein ... "Crystal structure of the homo-tetrameric DNA binding domain of Escherichia coli single-stranded DNA-binding protein determined ...
  https://en.wikipedia.org/wiki/Single-strand_DNA-binding_protein
*  In Vitro Selection of a Single-Stranded DNA Molecular Recognition Element Specific for Bromacil
... and functional aspects of DNA and RNA research. ... In Vitro Selection of a Single-Stranded DNA Molecular ... R. M. Williams, C. L. Crihfield, S. Gattu, L. A. Holland, and L. J. Sooter, "In vitro selection of a single-stranded DNA ... Towards this end, we have utilized a stringent in vitro selection method to identify single-stranded DNA molecular recognition ... This is best achieved through the selection of a stable single-stranded DNA (ssDNA) molecular recognition element (MRE). ...
  https://www.hindawi.com/journals/jna/2014/102968/
*  SSBP2 - Single-stranded DNA-binding protein 2 - Homo sapiens (Human) - SSBP2 gene & protein
... single-stranded DNA binding, transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA ... binding, positive regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated ... RNA polymerase II proximal promoter sequence-specific DNA binding, ... Cluster: Single-stranded DNA-binding protein 4. 355. P81877-3. Q9BWW4. Q9D032. K7C1B4. H9Z778. K9IJI4. A0A2K5UU13. A0A2J8V926. ...
  http://www.uniprot.org/uniprot/P81877
*  Max Planck Team Reports Single-Stranded NGS Protocol for Ancient DNA | GenomeWeb
... a next-generation sequencing protocol that prepares libraries from single-stranded DNA as opposed to double-stranded DNA, a ... method that is particularly amenable to sequencing ancient DNA. ... from single-stranded DNA as opposed to double-stranded DNA, a ... Max Planck Team Reports Single-Stranded NGS Protocol for Ancient DNA. Apr 09, 2013 ... Home » Max Planck Team Reports Single-Stranded NGS Protocol for Ancient DNA ...
  https://www.genomeweb.com/sequencing/max-planck-team-reports-single-stranded-ngs-protocol-ancient-dna
*  The Fitness Effects of Random Mutations in Single-Stranded DNA and RNA Bacteriophages
Here, we characterize the fitness effects of random mutations in DNA viruses and compare them with those found in RNA viruses, ...
  http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1000742
*  Forum MikroskopieTrends ´16: Von der Probe zum digitalen Modell « Quantum Related Diseases Research Group (QRDRG)
Rieper, Anders and Vedral modelled the electron clouds of nucleic acids in a single strand of DNA as a chain of coupled quantum ... Single blood test screens for eight cancer types. 18. Jan. 2018. Researchers have developed a single blood test that screens ... Scientists have now found that just how big a role Myc plays is determined by a distant section of DNA that contains a cluster ... A small subset of patients with tumors that bear mutations in a gene in the basic packaging of DNA (known as histone mutations ...
  http://diseasesresearchgroup.xonl.de/2016/12/01/forum-mikroskopietrends-16-von-der-probe-zum-digitalen-modell/