*  Protein consensus sequence motifs | SpringerLink
The large number of protein consensus sequences that may be recognized without computer analysis are reviewed. These include ... and consensus sequences that may be carried out on the internet.. Index Entries. Protein consensus sequences motifs protein- ... The large number of protein consensus sequences that may be recognized without computer analysis are reviewed. These include ... Aitken, A. (1995) Protein chemistry methods, posttranslational modification, consensus sequences, in Proteins Labfax (Price, N ...
  https://link.springer.com/article/10.1385%2FMB%3A12%3A3%3A241
*  Consensus sequence - Biology-Online Dictionary
Consensus sequence Of a series of related dna, rna or protein sequences, the sequence that reflects the most common choice of ... The generation of consensus sequences has been subjected to intensive mathematical analysis. ... Retrieved from "https://www.biology-online.org/dictionary/index.php?title=Consensus_sequence&oldid=10105" ...
  https://www.biology-online.org/dictionary/Consensus_sequence
*  Consensus sequence - Wikipedia
... can also be considered as consensus sequences. Thus a consensus sequence is a model for a putative DNA binding site: it is ... The conserved sequence motifs are called consensus sequences and they show which residues are conserved and which residues are ... Any mutation allowing a mutated nucleotide in the core promoter sequence to look more like the consensus sequence is known as ... A protein binding site, represented by a consensus sequence, may be a short sequence of nucleotides which is found several ...
  https://en.wikipedia.org/wiki/Consensus_sequence
*  Consensus sequence | Article about consensus sequence by The Free Dictionary
An average nucleotide sequence; each nucleotide is the most frequent at its position in the sequence Explanation of consensus ... Looking for consensus sequence? Find out information about consensus sequence. ... consensus sequence. Also found in: Dictionary, Thesaurus, Medical, Legal, Wikipedia. consensus sequence. [kən′sen·səs ‚sē·kwəns ... Then comparisons were made between the consensus sequence and the entries in the MicroSeq database.. DNA sequencing by Microseq ...
  http://encyclopedia2.thefreedictionary.com/consensus+sequence
*  Kozak consensus sequence - Wikipedia
The Kozak consensus sequence, Kozak consensus or Kozak sequence is a sequence which occurs on eukaryotic mRNA and has the ... The Kozak consensus sequence plays a major role in the initiation of the translation process. The sequence was named after the ... consensus, the nucleotides at positions +4 (i.e. G in the consensus) and -3 (i.e. either A or G in the consensus) relative to ... Lmx1b is an example of a gene with a weak Kozak consensus sequence. For initiation of translation from such a site, other ...
  https://en.wikipedia.org/wiki/Kozak_consensus_sequence
*  How to get the consensus sequence from a BAM alignment
Ngs Question ~ Consensus Could anybody point towards the direction in how to generate a "consensus" fasta sequence file in... ... Extract consensus dna sequence of multiple genes from multiple bam files in fasta format Hi, I have multiple bam files (aligned ... In the most general case the SNPs may not resolve into a single consensus sequence because that is not how the SNP callers work ... What the original poster needs is creating a consensus sequence out of BAM alignments. It is easy to misread that into the ...
  https://www.biostars.org/p/186536/
*  A highly conserved G-rich consensus sequence in hepatitis C virus core gene represents a new anti-hepatitis C target | Science...
A highly conserved G-rich consensus sequence in hepatitis C virus core gene represents a new anti-hepatitis C target ... A highly conserved G-rich consensus sequence in hepatitis C virus core gene represents a new anti-hepatitis C target ... A highly conserved G-rich consensus sequence in hepatitis C virus core gene represents a new anti-hepatitis C target ... A highly conserved G-rich consensus sequence in hepatitis C virus core gene represents a new anti-hepatitis C target ...
  http://advances.sciencemag.org/content/2/4/e1501535
*  Whole-genome consensus sequence analysis of a South African rotavirus SA11 sample reveals a mixed infection with two close...
"Whole-genome consensus sequence analysis of a South African rotavirus SA11 sample reveals a mixed infection with two close ... Determination of the whole-genome consensus sequence of the prototype DS-1 rotavirus using sequence-independent genome ... Whole-genome consensus sequence analysis of a South African rotavirus SA11 sample reveals a mixed... Mlera, Luwanika; O'Neill, ... Whole-genome consensus sequence analysis of a South African rotavirus SA11 sample reveals a mixed infection with two close ...
  https://www.deepdyve.com/lp/springer_journal/whole-genome-consensus-sequence-analysis-of-a-south-african-rotavirus-l2Ykhqwm3c
*  Microsatellite detection and consensus sequence verification by virtual PCR and machine learning
... ... Microsatellites, or simple sequence repeats, are genetic loci where several nucleotide bases are repeated in tandem. Since they ... or a shotgun-sequencing database without the overhead required to perform PCR chemically with human intervention. Moreover, a ... a program that detects and then verifies microsatellites by modeling PCR digitally from an Expressed Sequence Tag (EST) ...
  https://athenaeum.libs.uga.edu/handle/10724/21091
*  Secondary structure prediction and consensus sequence o | Open-i
Secondary structure prediction and consensus sequence of PelD and PleD. A. Secondary structure predication was made using the ... B. Consensus sequence of PelD and PleD was based on Phyre alignment of 20 and 100 homologues respectively. Residues required ... B. Consensus sequence of PelD and PleD was based on Phyre alignment of 20 and 100 homologues respectively. Residues required ... fig05: Secondary structure prediction and consensus sequence of PelD and PleD. A. Secondary structure predication was made ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC2170427_mmi0065-1474-f5&req=4
*  Vol 15: The utility of PacBio circular consensus sequencing for characterizing complex gene families in non-model organisms. -...
Vol 15: The utility of PacBio circular consensus sequencing for characterizing complex gene families in non-model organisms ... Descargar gratis o leer online en formato PDF el libro: Vol 15: The utility of PacBio circular consensus sequencing for ... Here we investigate the utility of Pacific Biosciences single molecule real-time SMRT circular consensus sequencing CCS as an ... Results: We generated 34,088 high quality circular consensus sequences of two diverse V1R subfamilies here referred to as V1RI ...
  http://libros.duhnnae.com/2017/jun3/149691418984-Vol-15-The-utility-of-PacBio-circular-consensus-sequencing-for-characterizing-complex-gene-families-in-non-model-organisms-Larsen-Peter-A-Heilma.php
*  Discovery and analysis of the first endogenous lentivirus | PNAS
Construction and Analysis of a Consensus Sequence.. We systematically screened publicly available, genome scale sequence ... we assembled a consensus sequence based on all rabbit genome matches with ,2 kb of lentivirus sequence identity (34 in total). ... The resulting consensus sequence [supporting information (SI) Fig. 5] contained long ORFs encoding Gag, Pol, and Env ... 2000) HIV Sequence Compendium, eds Kuiken C , Foley B , Freed E , Hahn B , Korber B , Marx PA , McCutchan F , Mellors JW , ...
  http://www.pnas.org/content/104/15/6261
*  DNA, Chromosomes and the Genomes
Consensus Sequence in DNA Attached is a file I need to use to answer some questions. The DNA is 5' to 3' These questions refer ... DNA Sequence Variation, Epigenetics, and Gel Electrophoresis. Question 1: Describe DNA sequence variations that can be often ... 2. What are the three main types of RNA, and what are their roles? 3. Using the following DNA template strand sequence, answer ... 1. By how many nucleotides do the first six nucleotides (on the 5' end) of the first intron differ from their consensus seque. ...
  https://brainmass.com/biology/dna-chromosomes-and-genomes
*  Quantifying the Impact of Human Immunodeficiency Virus-1 Escape From Cytotoxic T-Lymphocytes
Cohort consensus sequence. For each gene in the HIV-1 genome, all viral amino acid sequences in the cohort were aligned using ... save that the individual's viral nucleotide sequence is compared with the cohort consensus nucleotide sequence and only non- ... To obtain the nucleotide consensus, the amino acid sequence was used as an alignment guide for the program tranalign (available ... were taken from the K37 HLA-epitope list and compared to the epitope in the cohort consensus amino acid sequence. Any deviation ...
  http://pubmedcentralcanada.ca/pmcc/articles/PMC2973816/
*  PCR amplification of cDNAs of fish hemoglobin β chains using a consensus primer: cDNA-derived amino acid sequences of β chains...
To obtain the complete amino acid sequence, a 20-meric redundant consensus primer based on the N-terminal amino acid sequences ... PCR amplification of cDNAs of fish hemoglobin β chains using a consensus primer: cDNA-derived amino acid sequences of β chains ... were identified by the chemical amino acid sequencing of internal peptides. Thus this PCR methodology using the consensus ... Hemoglobin amino acid sequence catfish (Parasilurus asotus) scad (Decapterus maruadsi) This is a preview of subscription ...
  https://link.springer.com/article/10.1007/BF01886865
*  CONSORF: a consensus prediction system for prokaryotic coding sequences - Semantic Scholar
Then, it fills the empty genomic regions with the CDSs supported by consensus ab initio predictions. From those consensus ... It first predicts the CDSs supported by consensus alignments. The alignments are derived from multiple genome-to-proteome ... CONSORF is a fully automatic high-accuracy identification system that provides consensus prokaryotic CDS information. ... CONSORF: a consensus prediction system for prokaryotic coding sequences. *. Sungsoo Kang, Sung-Jin Yang, Sangsoo Kim, Jong Bhak ...
  https://www.semanticscholar.org/paper/CONSORF-a-consensus-prediction-system-for-prokaryo-Kang-Yang/eac3504a554c3b8c1a63000e18c4dd91bdab7412
*  Overlapping RNA and DNA binding d... preview & related info | Mendeley
Base Sequence. *Binding Sites. *Consensus Sequence. *DNA-Binding Proteins/chemistry/genetics/*metabolis ... Our findings suggest potential cellular RNA target sequences for WT1 and provide tools for studying the structural and ... Mutational analysis pinpointed ribonucleotide sequences critical for binding. Analysis of truncated WT1 proteins demonstrated ...
  https://www.mendeley.com/research-papers/overlapping-rna-dna-binding-domains-wt1-tumor-suppressor-gene-product-1/
*  Viruses | Free Full-Text | HIV-1 Subtype C Phylodynamics in the Global Epidemic
To address inter-patient viral evolution over time, a set of 653 unique HIV-1 subtype C gag sequences were retrieved from the ... consensus sequence; amino acid frequency; Gag; gag phylogeny; CTL epitopes; time of MRCA HIV-1 subtype C; consensus sequence; ... gag sequences was 8.7% (7.7%; 9.8%). Despite the heterogeneous origins of analyzed sequences, the gamut and frequency of amino ... To address inter-patient viral evolution over time, a set of 653 unique HIV-1 subtype C gag sequences were retrieved from the ...
  http://www.mdpi.com/1999-4915/2/1/33
*  Toxins | Free Full-Text | Consequences and Utility of the Zinc-Dependent Metalloprotease Activity of Anthrax Lethal Toxin |...
Klimpel, K.R.; Arora, N.; Leppla, S.H. Anthrax toxin lethal factor contains a zinc metalloprotease consensus sequence which is ... Table 1. Alignment of MEK/MKK amino acid sequences flanking the LF cleavage sites. MEK/MKK amino acid sequences (single-letter ... Table 1. Alignment of MEK/MKK amino acid sequences flanking the LF cleavage sites. MEK/MKK amino acid sequences (single-letter ... protein sequence HEFGHAV) containing a motif characteristic of metalloproteases (HEXXH, where X is any amino acid) [30]. ...
  http://www.mdpi.com/2072-6651/2/5/1038/htm
*  Viruses | Free Full-Text | HIV-1 Subtype C Phylodynamics in the Global Epidemic | Notes
To address inter-patient viral evolution over time, a set of 653 unique HIV-1 subtype C gag sequences were retrieved from the ... consensus sequence. amino acid frequency. Gag. gag phylogeny. CTL epitopes. time of MRCA. ...
  http://www.mdpi.com/1999-4915/2/1/33/notes
*  Virology term 1 - positive strand viruses. Flashcards by Isabel Leach | Brainscape
Cloud of viruses round consensus sequence. Upper limit on genome size. 90 ... Slippery sequence + downstream RNA structure (pseudoknot resistant to unwinding delays and tension in ribosome RNA binding). ... o ORF3 initiation very close to ORF2 termination: requires RNA sequence (TURBS) to retain the ribosome. Caulimovirus TAV ... Few, if any, convincing similarities between IRES elements in terms of sequence, size, or structure except for those from ...
  https://www.brainscape.com/flashcards/virology-term-1-positive-strand-viruses-3612681/packs/5494219
*  Image:DNA Overview.png - Wikipedia, the free encyclopedia
Interferon Consensus Sequence-binding protein* Smith-Waterman algorithm* Giemsa* Blending inheritance* Genetic viability* Gene ... Kozak consensus sequence* Overlap extension polymerase chain reaction* Histone methylation* Centromeric* Vitellogenin* Cre ... Canonical sequence* Polycistronic* Pribnow box* Repeated sequence (DNA)* Wobble base pair* Replication fork* Nucleotide salvage ... Insertion sequence* X hyperactivation* X:A ratio* SOS box* Back mutation* Bead theory* Biparental zygote* Spacer DNA* ...
  https://www.cs.mcgill.ca/~rwest/wikispeedia/wpcd/images/176/17604.png.htm
*  Restriction Enzyme Cloning Glossary | Sigma-Aldrich
Coding sequence. Coding strand. Codon. Codon optimization. Codon usage. Compatible cohesive ends. Consensus sequence. Contig. ... Consensus sequence Two or more similar (homologous) DNA or amino acid sequences from different species may be aligned using an ... Sequence. Shine-Dalgarno Sequence. Shotgun cloning. Shotgun sequencing. shRNA. Shuttle vector. Silencer. siRNA. SnoRNA. SNP / ... Contiguous sequence. When two or more overlapping sequence reads are joined to form a continuous sequence strand. ...
  https://www.sigmaaldrich.com/technical-documents/protocols/biology/restriction-enzyme-cloning-manual-glossary.html