Loading...
*  CombAlign: a code for generating a one-to-many sequence alignment from a set of pairwise structure-based sequence alignments |...
However, there exist applications in which the end goal is not to drive a set of structures toward a consensus, but rather to ... or sequence-based sequence alignment (MSSA) given a set of pairwise sequence alignments (which may be structure based). ... The following sequences were downloaded from Genbank and used in this work: 1) Matrix protein (VP40) sequences for Ebolavirus ... CombAlign: a code for generating a one-to-many sequence alignment from a set of pairwise structure-based sequence alignments. ...
  https://scfbm.biomedcentral.com/articles/10.1186/s13029-015-0039-1
*  Protein consensus sequence motifs | SpringerLink
The large number of protein consensus sequences that may be recognized without computer analysis are reviewed. These include ... and consensus sequences that may be carried out on the internet.. Index Entries. Protein consensus sequences motifs protein- ... The large number of protein consensus sequences that may be recognized without computer analysis are reviewed. These include ... Aitken, A. (1995) Protein chemistry methods, posttranslational modification, consensus sequences, in Proteins Labfax (Price, N ...
  https://link.springer.com/article/10.1385%2FMB%3A12%3A3%3A241
*  Consensus sequence - Biology-Online Dictionary
Consensus sequence Of a series of related dna, rna or protein sequences, the sequence that reflects the most common choice of ... The generation of consensus sequences has been subjected to intensive mathematical analysis. ... Retrieved from "https://www.biology-online.org/dictionary/index.php?title=Consensus_sequence&oldid=10105" ...
  https://www.biology-online.org/dictionary/Consensus_sequence
*  Consensus sequence - Wikipedia
... can also be considered as consensus sequences. Thus a consensus sequence is a model for a putative DNA binding site: it is ... The conserved sequence motifs are called consensus sequences and they show which residues are conserved and which residues are ... Any mutation allowing a mutated nucleotide in the core promoter sequence to look more like the consensus sequence is known as ... A protein binding site, represented by a consensus sequence, may be a short sequence of nucleotides which is found several ...
  https://en.wikipedia.org/wiki/Consensus_sequence
*  Kozak consensus sequence - Wikipedia
The Kozak consensus sequence, Kozak consensus or Kozak sequence is a sequence which occurs on eukaryotic mRNA and has the ... The Kozak consensus sequence plays a major role in the initiation of the translation process. The sequence was named after the ... consensus, the nucleotides at positions +4 (i.e. G in the consensus) and -3 (i.e. either A or G in the consensus) relative to ... Lmx1b is an example of a gene with a weak Kozak consensus sequence. For initiation of translation from such a site, other ...
  https://en.wikipedia.org/wiki/Kozak_consensus_sequence
*  Consensus sequence | Article about consensus sequence by The Free Dictionary
An average nucleotide sequence; each nucleotide is the most frequent at its position in the sequence Explanation of consensus ... Looking for consensus sequence? Find out information about consensus sequence. ... consensus sequence. Also found in: Dictionary, Thesaurus, Medical, Legal, Wikipedia. consensus sequence. [kən′sen·səs ‚sē·kwəns ... Then comparisons were made between the consensus sequence and the entries in the MicroSeq database.. DNA sequencing by Microseq ...
  http://encyclopedia2.thefreedictionary.com/consensus+sequence
*  FOXM1 binds directly to non-consensus sequences in the human genome | Genome Biology | Full Text
... assay identified point mutations in the DNA binding domain of FOXM1 that inhibit binding to a FKH consensus sequence. Cell ... FOXM1 is specifically recruited to chromatin through co-factor interactions by binding directly to non-canonical DNA sequences. ... As expected the FOXM1B DBD associates with a positive control FKH consensus sequence in a dose dependent manner (K d of 224 ± ... The first (1) shows FOXM1 binding to FKH consensus sequences in concert with recruitment of the MuvB complex present at cell ...
  https://genomebiology.biomedcentral.com/articles/10.1186/s13059-015-0696-z
*  How to get the consensus sequence from a BAM alignment
Ngs Question ~ Consensus Could anybody point towards the direction in how to generate a "consensus" fasta sequence file in... ... Extract consensus dna sequence of multiple genes from multiple bam files in fasta format Hi, I have multiple bam files (aligned ... In the most general case the SNPs may not resolve into a single consensus sequence because that is not how the SNP callers work ... What the original poster needs is creating a consensus sequence out of BAM alignments. It is easy to misread that into the ...
  https://www.biostars.org/p/186536/
*  A highly conserved G-rich consensus sequence in hepatitis C virus core gene represents a new anti-hepatitis C target | Science...
A highly conserved G-rich consensus sequence in hepatitis C virus core gene represents a new anti-hepatitis C target ... A highly conserved G-rich consensus sequence in hepatitis C virus core gene represents a new anti-hepatitis C target ... A highly conserved G-rich consensus sequence in hepatitis C virus core gene represents a new anti-hepatitis C target ... A highly conserved G-rich consensus sequence in hepatitis C virus core gene represents a new anti-hepatitis C target ...
  http://advances.sciencemag.org/content/2/4/e1501535
*  Whole-genome consensus sequence analysis of a South African rotavirus SA11 sample reveals a mixed infection with two close...
"Whole-genome consensus sequence analysis of a South African rotavirus SA11 sample reveals a mixed infection with two close ... Determination of the whole-genome consensus sequence of the prototype DS-1 rotavirus using sequence-independent genome ... Whole-genome consensus sequence analysis of a South African rotavirus SA11 sample reveals a mixed... Mlera, Luwanika; O'Neill, ... Whole-genome consensus sequence analysis of a South African rotavirus SA11 sample reveals a mixed infection with two close ...
  https://www.deepdyve.com/lp/springer_journal/whole-genome-consensus-sequence-analysis-of-a-south-african-rotavirus-l2Ykhqwm3c
*  Microsatellite detection and consensus sequence verification by virtual PCR and machine learning
... ... Microsatellites, or simple sequence repeats, are genetic loci where several nucleotide bases are repeated in tandem. Since they ... or a shotgun-sequencing database without the overhead required to perform PCR chemically with human intervention. Moreover, a ... a program that detects and then verifies microsatellites by modeling PCR digitally from an Expressed Sequence Tag (EST) ...
  https://athenaeum.libs.uga.edu/handle/10724/21091
*  GenomeCons 1.0 - Manipulate Multiple Genome Sequence Alignments and their Consensus Sequences
... web server to manipulate multiple genome sequence alignments and their consensus sequences for high-throughput genome sequence ... Posted by admin at 4:46 pm Tagged with: Consensus Sequence, Genome, GenomeCons, Sequence Alignments 50 views. Sorry, the ... GenomeCons: a web server for manipulating multiple genome sequence alignments and their consensus sequences.. Sato T, Suyama M. ... GenomeCons 1.0 - Manipulate Multiple Genome Sequence Alignments and their Consensus Sequences. Alignment / BLAST ...
  http://www.mybiosoftware.com/genomecons-1-0-manipulate-multiple-genome-sequence-alignments-and-their-consensus-sequences.html
*  Secondary structure prediction and consensus sequence o | Open-i
Secondary structure prediction and consensus sequence of PelD and PleD. A. Secondary structure predication was made using the ... B. Consensus sequence of PelD and PleD was based on Phyre alignment of 20 and 100 homologues respectively. Residues required ... B. Consensus sequence of PelD and PleD was based on Phyre alignment of 20 and 100 homologues respectively. Residues required ... fig05: Secondary structure prediction and consensus sequence of PelD and PleD. A. Secondary structure predication was made ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC2170427_mmi0065-1474-f5&req=4
*  Gentaur Molecular :GenWay \ Interferon Consensus Sequence Binding Protein 1 (IRF8 ICSBP1) Rabbit anti-Human Polyclonal (C...
Interferon Consensus Sequence Binding Protein 1 (IRF8_ICSBP1) Rabbit anti-Human Polyclonal (C-Terminus) Antibody \ GWB-60223C ... Interferon Consensus Sequence Binding Protein 1 (IRF8_ICSBP1) Rabbit anti-Human Polyclonal (C-Terminus) Antibody Human samples ... Interferon Consensus Sequence Binding Protein 1 (IRF8_ICSBP1) Rabbit anti-Human Polyclonal (C-Terminus) Antibody antibody ... Interferon Consensus Sequence Binding Protein 1 (IRF8_ICSBP1) Rabbit anti-Human Polyclonal (C-Terminus) Antibody storing ...
  http://www.antibody-antibodies.com/product4275524-search-Interferon_Consensus_Sequence_Binding_Protein_1_
*  Unique NS5b Hepatitis C Virus Gene Sequence Consensus Database...
Unique NS5b Hepatitis C Virus Gene Sequence Consensus Database Is Essential for Standardization of Genotype Determinations in ... Unique NS5b Hepatitis C Virus Gene Sequence Consensus Database Is Essential for Standardization of Genotype Determinations in ... a reliable HCV genotype for clinical and epidemiological purposes as long as they are provided a consensus reference sequence ... genotype determination involving 12 laboratories demonstrates that any laboratory with expertise in sequencing techniques would ...
  https://www.mysciencework.com/publication/show/unique-ns5b-hepatitis-c-virus-gene-sequence-consensus-database-is-essential-for-standardization-of-genotype-determinations-in-multicenter-epidemiological-studies
*  Vol 15: The utility of PacBio circular consensus sequencing for characterizing complex gene families in non-model organisms. -...
Vol 15: The utility of PacBio circular consensus sequencing for characterizing complex gene families in non-model organisms ... Descargar gratis o leer online en formato PDF el libro: Vol 15: The utility of PacBio circular consensus sequencing for ... Here we investigate the utility of Pacific Biosciences single molecule real-time SMRT circular consensus sequencing CCS as an ... Results: We generated 34,088 high quality circular consensus sequences of two diverse V1R subfamilies here referred to as V1RI ...
  http://libros.duhnnae.com/2017/jun3/149691418984-Vol-15-The-utility-of-PacBio-circular-consensus-sequencing-for-characterizing-complex-gene-families-in-non-model-organisms-Larsen-Peter-A-Heilma.php
*  Simple sequence repeat-based consensus linkage map of Bombyx mori. - Semantic Scholar
... a second generation consensus silkworm genetic map with a range of 7-40 markers per linkage group and a total map length of ... cDNA sequences, and cloned random amplified polymorphic DNAs. By integrating a visible mutation p (plain, larval marking) and ... of silkworm aided by visible mutations and cleaved amplified polymorphic sequence markers developed from previously mapped ... We established a genetic linkage map employing 518 simple sequence repeat (SSR, or microsatellite) markers for Bombyx mori ( ...
  https://www.semanticscholar.org/paper/Simple-sequence-repeat-based-consensus-linkage-map-Miao-Xub/46ce26f6d7706539ae4f85e94d1d09236fc6708e
*  Sequences similar to the consensus Ste12p binding sit | Open-i
Sequences similar to the consensus Ste12p binding site in the upstream regions of the FIG1, FIG2, KAR5/FIG3, and FIG4 genes. ... Underlined sequences represent exact matches to the PRE consensus sequence. Mentions: An upstream regulatory element termed the ... Figure 2: Sequences similar to the consensus Ste12p binding site in the upstream regions of the FIG1, FIG2, KAR5/FIG3, and FIG4 ... Figure 2: Sequences similar to the consensus Ste12p binding site in the upstream regions of the FIG1, FIG2, KAR5/FIG3, and FIG4 ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC2140177_JCB29347.f2&req=4
*  Discovery and analysis of the first endogenous lentivirus | PNAS
Construction and Analysis of a Consensus Sequence.. We systematically screened publicly available, genome scale sequence ... we assembled a consensus sequence based on all rabbit genome matches with ,2 kb of lentivirus sequence identity (34 in total). ... The resulting consensus sequence [supporting information (SI) Fig. 5] contained long ORFs encoding Gag, Pol, and Env ... 2000) HIV Sequence Compendium, eds Kuiken C , Foley B , Freed E , Hahn B , Korber B , Marx PA , McCutchan F , Mellors JW , ...
  http://www.pnas.org/content/104/15/6261
*  Quantifying the Impact of Human Immunodeficiency Virus-1 Escape From Cytotoxic T-Lymphocytes
Cohort consensus sequence. For each gene in the HIV-1 genome, all viral amino acid sequences in the cohort were aligned using ... save that the individual's viral nucleotide sequence is compared with the cohort consensus nucleotide sequence and only non- ... To obtain the nucleotide consensus, the amino acid sequence was used as an alignment guide for the program tranalign (available ... were taken from the K37 HLA-epitope list and compared to the epitope in the cohort consensus amino acid sequence. Any deviation ...
  http://pubmedcentralcanada.ca/pmcc/articles/PMC2973816/
*  PCR amplification of cDNAs of fish hemoglobin β chains using a consensus primer: cDNA-derived amino acid sequences of β chains...
To obtain the complete amino acid sequence, a 20-meric redundant consensus primer based on the N-terminal amino acid sequences ... PCR amplification of cDNAs of fish hemoglobin β chains using a consensus primer: cDNA-derived amino acid sequences of β chains ... were identified by the chemical amino acid sequencing of internal peptides. Thus this PCR methodology using the consensus ... Hemoglobin amino acid sequence catfish (Parasilurus asotus) scad (Decapterus maruadsi) This is a preview of subscription ...
  https://link.springer.com/article/10.1007/BF01886865
*  Genome-scale analysis of regulatory protein acetylation enzymes from photosynthetic eukaryotes | BMC Genomics | Full Text
Based on consensus molecular phylogenetic and subcellular localization data we found new sub-classes of enzymes in established ... Lastly, promoter element enrichment analyses across species revealed conserved cis-regulatory sequences that support KAT and ... KAT and KDAC orthologs were identified in sequenced genomes ranging from glaucophytes and algae to land plants and then ... Domain analysis and consensus sequence creation. To analyze putative domains from each species type (e.g. dicots) for each KDAC ...
  https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-017-3894-0
*  CONSORF: a consensus prediction system for prokaryotic coding sequences - Semantic Scholar
Then, it fills the empty genomic regions with the CDSs supported by consensus ab initio predictions. From those consensus ... It first predicts the CDSs supported by consensus alignments. The alignments are derived from multiple genome-to-proteome ... CONSORF is a fully automatic high-accuracy identification system that provides consensus prokaryotic CDS information. ... CONSORF: a consensus prediction system for prokaryotic coding sequences. *. Sungsoo Kang, Sung-Jin Yang, Sangsoo Kim, Jong Bhak ...
  https://www.semanticscholar.org/paper/CONSORF-a-consensus-prediction-system-for-prokaryo-Kang-Yang/eac3504a554c3b8c1a63000e18c4dd91bdab7412