Natural killer cell receptors in cattle: a bovine killer cell immunoglobulin-like receptor multigene family contains members...
A 2-Mb YAC contig and physical map of thenatural killer gene complex on mouse chromosome 6. Genomics 1997. 42: 16-25. *CrossRef ... A bovine whole-genome radiation hybrid panel and outline map. Mamm. Genome 2002. 13: 469-474. *CrossRef, ... Ahn, J. S., Hamilton, M. J., Davis, W. C. and Park, Y. H., Cloning of bovine CD69. Vet. Immunol. Immunopathol. 2002. 88: 43-48 ... Dissen, E., Ryan, J. C., Seaman, W. E. and Fossum, S., An autosomaldominant locus, Nka, mapping to the Ly-49 region of a rat ...http://onlinelibrary.wiley.com/doi/10.1002/eji.200323710/references
Fine-mapping and construction of a bovine contig spanning the ovine callipyge locus. - Shay T. L.
Using Type I loci mapping to the IDVGA30-OY3 interval as anchor points, we have constructed a 1.4-Mb bovine BAC contig ... Reference : Fine-mapping and construction of a bovine contig spanning the ovine callipyge locus.. ... Fine-mapping and construction of a bovine contig spanning the ovine callipyge locus. ... The OAR18q linkage map and human HSA14q transcript map were aligned by genotyping two bovine-hamster whole-genome radiation ...http://orbi.ulg.ac.be/handle/2268/102190
A High Density SNP Array for the Domestic Horse and Extant Perissodactyla: Utility for Association Mapping, Genetic Diversity,...
Association mapping confirmed a large conserved segment containing the chestnut coat color locus in domestic horses. We also ... The Bovine HapMap Consortium (2009) Genome-Wide Survey of SNP Variation Uncovers the Genetic Structure of Cattle Breeds. ... This project has produced the EquCab2.0 assembly with a total contig length of 2.43 Gb, 96% of it assigned to chromosomes, and ... a), mapping of the chestnut locus across breeds, based on inferred coat color phenotype; b), mapping of the black (agouti) ...http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1002451
Breakpoint mapping positions the callipyge gene within a 450-kilobase chromosome segment containing the DLK1 and GTL2 genes,...
"Breakpoint mapping positions the callipyge gene within a 450-kilobase chromosome segment containing the DLK1 and GTL2 genes, ... contigs spanning this interval were constructed by using bovine +) ewe http://www.deepdyve.com/assets/images/DeepDyve-Logo-lg. ... Breakpoint mapping positions the callipyge gene within a 450-kilobase chromosome segment containing the DLK1 and GTL2 genes. ... Breakpoint mapping positions the callipyge gene within a 450-kilobase chromosome segment containing the DLK1 and GTL2 genes. ...https://www.deepdyve.com/lp/springer_journal/breakpoint-mapping-positions-the-callipyge-gene-within-a-450-kilobase-FOSTVHphyf
Protocols and Video Articles Authored by Yuji Mishina (Translated to Hindi)
Previously, we mapped the locus responsible for the disease on the distal end of bovine chromosome 6. Here, we narrowed the ... critical region to approximately 2 cM by using linkage analysis, constructed a BAC and YAC contig covering this region, and ... These findings indicate that LBN is responsible for bovine chondrodysplastic dwarfism and has a critical role in a skeletal ... We have also identified a causative gene LIMBIN for bovine chondrodysplastic dwarfism (bcd) that is later identified as the ...https://www.jove.com/author/Yuji_Mishina?language=Hindi
The major histocompatibility complex in Old World camelids and low polymorphism of its class II genes | BMC Genomics | Full Text
Physical mapping located the MHC region to the chromosome 20 in Camelus dromedarius. Cytogenetic and comparative analyses of ... The objectives of this study were to identify, map and characterize the MHC region of Old World camelids, with special ... II and III regions and likely to be located within the same contigs were identified in the assembled reference bovine genome ... Physical mapping of the MHC region. The two FISH probes targeting the two MHC regions mapped to dromedary chromosome 20q12 ...https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-016-2500-1
Frontiers | Micropathogen Community Analysis in Hyalomma rufipes via High-Throughput Sequencing of Small RNAs | Frontiers in...
Reads that could not be mapped were once more assembled using the SOAP software. The assembly was repeated twice until contigs ... bovine anaplasmosis, tick typhus (caused by Rickettsia spp.) and bovine babesiosis using the specific primers listed in Table 4 ... Mapping of micropathogen sequencing reads to genomes. (A) Cleaned sequence reads were mapped to the SCRV virus genome (GenBank ... The maximum contig length was 901 bp, and homology analysis was performed for these contigs at the nucleotide and protein ...https://www.frontiersin.org/articles/10.3389/fcimb.2017.00374/full
Genome-wide Analysis of Epstein-Barr Virus (EBV) Integration and Strain in C666-1 and Raji Cells
Then realign the clipped part of the contigs to the hybrid reference genome. If the partially mapped part and the clipped part ... C666-1 and Raji were grown in RPMI 1640 (HyClone, Logan, UT, USA) plus 10% fetal bovine serum (GIBCO, Grand Island, NY, USA) ... Total raw data mapped to human (bp). 182,230,285,487. 183,866,611,697. Total raw data mapped to EBV (bp). 117,172,040. ... LPLUNC1 inhibits nasopharyngeal carcinoma cell growth via down-regulation of the MAP kinase and cyclin D1/E2F pathways. PLoS ...http://www.jcancer.org/v07p0214.htm
ACEDB Genome Database Software FAQ
GMAP genetic map PMAP physical map (Sulston contig style) SEQ DNA sequence - symbolic, features, sequence and translation GRID ... 1993 Database : ? Species : Bovine PI : Leland Ellis Last_update : Sept. 1993 Database : ? Species : Sorghum PI : Leland Ellis ... Each object is stored as a tree, following a hierarchical structure for the class (called the 'model'). Maps are derived from ... Computer staff for the UC Berkeley Drosophila physical mapping project the LBL Human Chromosome 21 project, and the LBL plant ...http://www.bio.net/bionet/mm/acedb/1993-November/002783.html
Molecular Cytogenetics and Genomics Laboratory - Texas A&M Veterinary Medicine & Biomedical Sciences
A BAC contig map over the proximal approximately 3.3 Mb region of horse chromosome 21. Cytogenet. Genome Res. 120:164-172. ... Assignment of six genes to bovine chromosomes 5 and 16 by fluorescence in situ hybridization, radiation hybrid mapping and ... A High Resolution RH Map of the Bovine Major Histocompatibility Complex. BMC Genomics, 10:182-191. ... Evaluation of Compass as a comparative mapping tool for ESTs using horse radiation hybrid maps. Anim Genet 38:294-302 ...https://vetmed.tamu.edu/labs/cytogenics-genomics/publications
A BAC contig map over the proximal approximately 3.3 Mb region of horse chromosome 21. Brinkmeyer-Langford C, Raudsepp T, ... A high resolution RH map of the bovine major histocompatibility complex. Brinkmeyer-Langford CL, Childers CP, Fritz KL, ... Bovine Genome Sequencing and Analysis Consortium, Elsik CG, Tellam RL, Worley KC, Gibbs RA, Muzny DM, Weinstock GM, Adelson DL ... A 1.3-Mb interval map of equine homologs of HSA2. Wagner ML, Raudsepp T, Goh G, Agarwala R, Schaffer AA, Dranchak PK, ...http://vetmed.tamu.edu/pda/directorydetail?userid=227
TIMPs of parasitic helminths - a large-scale analysis of high-throughput sequence datasets | Parasites & Vectors | Full Text
... were mapped to the longest contigs encoding individual putative TIMP proteins using the program SOAP2 . Briefly, raw ... bovine and deer liver fluke, respectively) (http://www.gasserlab.org). The algorithms BLASTp  and InterProScan  were ... To provide a relative assessment of transcript abundance, the number of raw reads that mapped to each sequence was normalized ... Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B: Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat ...https://parasitesandvectors.biomedcentral.com/articles/10.1186/1756-3305-6-156
Proceedings of the 15th Annual UT-KBRIN Bioinformatics Summit 2016 | BMC Bioinformatics | Full Text
When the short reads from three horses were mapped to these EquCab3 bacterial contigs, 217 contigs had very low (,5%) mapping ... Here we present a summary of non-bovine alleles that can be measured across these species relative to the Bovine reference ... and we calculated mapping coverage for each Kraken-flagged contig. Reads with mapping quality ,10 were excluded from the ... The 217 contigs in EquCab3 containing significant BLAST hits to bacterial proteins, as well as very few mapped short reads from ...https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1154-y
Disruption of acvrl1 increases endothelial cell number in zebrafish cranial vessels | Development
We meiotically mapped the vbg locus to an interval of 0.035 cM on LG23 and established a physical contig across this region ... P19 cells maintained in DMEM with 10% fetal bovine serum and antibiotics were transiently transfected with Smad2/3-responsive ... Meiotic and physical map of the vbg interval on LG23. Markers that were meiotically mapped are shown in bold at the top of the ... 3). A physical contig anchored at the z14967-end of the interval was generated, and meiotic mapping of single nucleotide ...http://dev.biologists.org/content/129/12/3009
Fallacy of the Unique Genome: Sequence Diversity within Single Helicobacter pylori Strains
SOLiD mate pairs were mapped to these contigs to determine the ordering and orientation of the larger contigs, with shorter ... fetal bovine serum (FBS), 25% glycerol, and 5% dimethyl sulfoxide; and frozen at −80°C. To resuscitate freezer stocks, a small ... of the pairs mapped uniquely to a single contig, 37% of the pairs mapped to multiple locations, and 18% of the pairs connected ... For reads mapping within a contig, the mean length of the mate pair was 2,053 bp, with a standard deviation of 399 bp. After ...http://pubmedcentralcanada.ca/pmcc/articles/PMC5358919/
Gene Report for G00000652 - Genes2Cognition Neuroscience Research Programme
... and II were mapped to bovine (BTA) Chromosomes (Chrs) 18 (UPK1A), 1 (UPK1B), and 15 (UPK2), respectively. Two bovine genomic ... and cosmid contig. The genetic data were enhanced after the isolation of a large 1.2-megabase YAC derived from AFM163yh2, in ... Sycp1-rs2 was mapped to Chr 3, whereas Sycp1-rs3 was mapped to Chr 7. The relaxin-like factor gene (Rlnl) was mapped to Chr 8, ... The genes encoding these uroplakins were mapped to chromosomes of cattle through their segregation in a panel of bovine x ...http://www.genes2cognition.org/db/gene/G00000652
Analysis of Ultra Low Genome Conservation in Clostridium difficile
All the pathways mapped using membrane protein data were already mapped by spore protein data. When all pathway mappings were ... Contigs were ordered and oriented based on their alignment to the reference genome C. difficile 630 using NUCMER. Contigs thus ... First, we carried out CGH analysis of 18 C. difficile isolates from human, bovine, canine and food origin (Table S1) using our ... dataset, a total of 168 pathways were mapped (Table 3). Next, we were able to map a total of 62 pathways using the dataset from ...http://pubmedcentralcanada.ca/pmcc/articles/PMC2999544/
SMART: Secondary literature for AICARFT IMPCHas domain
The genes were mapped to segments of six different bovine chromosomes using a radiation hybrid (RH) cell panel. The gene PPAT, ... 3811 bp for human SRrp508 was cloned through a blast search of public databases following the identification of a cDNA contig ... Mapping of the bovine genes of the de novo AMP synthesis pathway. ... The seven bovine genes are expressed at a higher level in ... Cloning and characterization of the bovine GART gene revealed that the bovine gene consists of 23 exons spanning approximately ...http://smart.embl-heidelberg.de/smart/show_secondary.cgi?domain=AICARFT_IMPCHas
Genome project - Wikipedia
For a bacterium containing a single chromosome, a genome project will aim to map the sequence of that chromosome. For the human ... The resulting (draft) genome sequence is produced by combining the information sequenced contigs and then employing linking ... see Chimpanzee Genome Project Domestic Cow Bovine Genome Honey Bee Genome Sequencing Consortium Horse genome Human microbiome ... Scaffolds are positioned along the physical map of the chromosomes creating a "golden path". Originally, most large-scale DNA ...https://en.wikipedia.org/wiki/Genome_project
ORBi: Browsing ORBi
We report mapping of a quantitative trait locus (QTL) with a major effect on bovine stature to a approximately 780-kb interval ... maps to that contig, and (3) the identification of a nonconservative K232A substitution in the DGAT1 gene with a major effect ... We report mapping of a quantitative trait locus (QTL) with a major effect on bovine stature to a approximately 780-kb interval ... to improve the mapping resolution of a QTL with major effect on milk yield and composition that was previously mapped to bovine ...https://orbi.uliege.be/browse?type=authorulg&rpp=20&value=Cambisano%2C+Nadine+p002445
A whole-genome assembly of the domestic cow, Bos taurus | Genome Biology | Full Text
We constructed a new cow-human synteny map that expands upon previous maps. We also identified for the first time a portion of ... By using independent mapping data and conserved synteny between the cow and human genomes, we were able to construct an ... and we identified 71 contigs that map to Y. When contigs in the same scaffolds were included, the total increased to 94 contigs ... A physical map of the bovine genome. Genome Biol. 2007, 8: R165-10.1186/gb-2007-8-8-r165.PubMedPubMed CentralView ArticleGoogle ...https://genomebiology.biomedcentral.com/articles/10.1186/gb-2009-10-4-r42
Sequence editing, mapping, alignment, and contig production was performed using the DNASTAR (Madison, WI) and Vector NTI Suite ... Wick PF, Senter RA, Parsels LA, Uhler MD, Holz RW (1993) Transient transfection studies of secretion in bovine chromaffin cells ... were grown in 100-mm-diameter dishes and starved for 1 hr in DMEM supplemented with 1 mm l-glutamine and 10 μg/ml bovine serum ...http://www.jneurosci.org/content/23/28/9385
Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping...
... indicating the presence of paralogous genomic regions or mis-assignments of genome sequence contigs during the assembly and ... Just three regions in excess of 10 cM remain where no markers were mapped. We compared the positions of the mapped SNP markers ... A total of 311 markers (13.7% of all mapped markers) mapped to positions that conflicted with their predicted positions on the ... A linkage map spanning 1,282.2 cM was produced comprising 2,272 SNP markers, 306 SSR markers and the S- locus. The length of ...https://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-13-203
Transcriptome profiling of antiviral immune and dietary fatty acid dependent responses of Atlantic salmon macrophage-like cells...
The resulting significant transcript lists were re-annotated using contigs or singletons  that were used for designing the ... Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations. ... fetal bovine serum (FBS; Gibco), 10 U ml−1 heparin (Sigma-Aldrich, St. Louis, MO, USA) and 100 U ml−1 penicillin and 100 μg ml− ... The resulting BLASTx hits were mapped to gene ontology (GO) terms of pIC-responsive transcripts in each dietary group (GO ...https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-017-4099-2
HOXC6 - Homeobox protein Hox-C6 - Ovis aries (Sheep) - HOXC6 gene & protein
Bos taurus (Bovine). Cervus elaphus hippelaphus (European red deer). Ailuropoda melanoleuca (Giant panda). Ovis aries (Sheep). ... They may also represent different stages in a genome project and include components such as contigs, scaffolds or Whole Genome ... Retrieve/ID mapping. *Peptide search. Core data. *Protein knowledgebase (UniProtKB). *Sequence clusters (UniRef) ... Bos taurus (Bovine). Erinaceus europaeus (Western European hedgehog). And more. 242. UniRef50_P09025. Cluster: Homeobox protein ...http://www.uniprot.org/uniprot/P49925