Natural killer cell receptors in cattle: a bovine killer cell immunoglobulin-like receptor multigene family contains members...
A 2-Mb YAC contig and physical map of thenatural killer gene complex on mouse chromosome 6. Genomics 1997. 42: 16-25. *CrossRef ... A bovine whole-genome radiation hybrid panel and outline map. Mamm. Genome 2002. 13: 469-474. *CrossRef, ... Ahn, J. S., Hamilton, M. J., Davis, W. C. and Park, Y. H., Cloning of bovine CD69. Vet. Immunol. Immunopathol. 2002. 88: 43-48 ... Dissen, E., Ryan, J. C., Seaman, W. E. and Fossum, S., An autosomaldominant locus, Nka, mapping to the Ly-49 region of a rat ...http://onlinelibrary.wiley.com/doi/10.1002/eji.200323710/references
Fine-mapping and construction of a bovine contig spanning the ovine callipyge locus. - Shay T. L.
Using Type I loci mapping to the IDVGA30-OY3 interval as anchor points, we have constructed a 1.4-Mb bovine BAC contig ... Reference : Fine-mapping and construction of a bovine contig spanning the ovine callipyge locus.. ... Fine-mapping and construction of a bovine contig spanning the ovine callipyge locus. ... The OAR18q linkage map and human HSA14q transcript map were aligned by genotyping two bovine-hamster whole-genome radiation ...http://orbi.ulg.ac.be/handle/2268/102190
Servicio de Genética
High resolution human-bovine comparative mapping based on a closed YAC contig spanning the bovine mh locus. Mammalian Genome, ... Association of bovine meat quality traits with genes included in the PPARG and PPARGC1A networks. Meat Science, 94: 328-335. ... Detection of bovine kappa-casein variants A, B, C and E by means of PCR-Simple Strand Conformation polymorphism (PCR-SSCP). ... Bovine SLC11A1 3' UTR SSCP genotype evaluated by a macrophage in vitro killing assay employing a Brucella abortus strain. ...https://www.ucm.es/genetvet/nuestras-publicaciones
Illumina MiSeq 16S amplicon sequence analysis of bovine respiratory disease associated bacteria in lung and mediastinal lymph...
Contigs corresponding to the abundant Leptotrichiaceae OTU were sequenced and found not to be identical to any known bacterial ... However, it has not yet been used to examine the microbiome of the bovine lower respiratory tract. The objective of this study ... Two Leptotrichiaceae sequence contigs were subsequently assembled from bacterial DNA-enriched shotgun sequences. The ... Bovine respiratory disease (BRD) is caused by growth of single or multiple species of pathogenic bacteria in lung tissue ...https://bmcvetres.biomedcentral.com/articles/10.1186/s12917-017-1035-2
Bos taurus genome assembly | BMC Genomics | Full Text
Genotyping and genetic mapping of 17,482 SNPs revealed that more than 99.2% were correctly positioned within the Btau_4.0 ... The assembly contigs and scaffolds align linearly to the finished BACs, suggesting that misassemblies are rare. ... The biological analysis of this bovine genome assembly is being published, and the sequence data is available to support future ... Finally, the entire assembly was placed on chromosomes using the available map information. Over 90% of the assembly is now ...https://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-10-180
Metatranscriptomic Profiling Reveals Linkages between the Active Rumen Microbiome and Feed Efficiency in Beef Cattle | Applied...
It is noticeable that only a small fraction of assembled mRNA contigs (22.4% in the data sets) could be mapped to the KEGG ... Profiles of bovine rumen microbiome. (A) Microbial metabolic pathways based on their first- and second-level functions in the ... Assembled contigs from each sample were then pooled, and identical contigs were binned to construct a nonredundant contig set. ... An average of 70.7% ± 2.2% and 3.2% ± 0.4% of mRNAs could be mapped back to these KEGG and CAZy annotated reference contigs, ...https://aem.asm.org/content/83/9/e00061-17
Breakpoint mapping positions the callipyge gene within a 450-kilobase chromosome segment containing the DLK1 and GTL2 genes,...
"Breakpoint mapping positions the callipyge gene within a 450-kilobase chromosome segment containing the DLK1 and GTL2 genes, ... contigs spanning this interval were constructed by using bovine +) ewe http://www.deepdyve.com/assets/images/DeepDyve-Logo-lg. ... Breakpoint mapping positions the callipyge gene within a 450-kilobase chromosome segment containing the DLK1 and GTL2 genes. ... Breakpoint mapping positions the callipyge gene within a 450-kilobase chromosome segment containing the DLK1 and GTL2 genes. ...https://www.deepdyve.com/lp/springer_journal/breakpoint-mapping-positions-the-callipyge-gene-within-a-450-kilobase-FOSTVHphyf
A High Density SNP Array for the Domestic Horse and Extant Perissodactyla: Utility for Association Mapping, Genetic Diversity,...
Association mapping confirmed a large conserved segment containing the chestnut coat color locus in domestic horses. We also ... The Bovine HapMap Consortium (2009) Genome-Wide Survey of SNP Variation Uncovers the Genetic Structure of Cattle Breeds. ... This project has produced the EquCab2.0 assembly with a total contig length of 2.43 Gb, 96% of it assigned to chromosomes, and ... a), mapping of the chestnut locus across breeds, based on inferred coat color phenotype; b), mapping of the black (agouti) ...http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1002451
Physical mapping of the bovine immunoglobulin heavy chain cons...
Bovine antibodies have recently attracted increasing attention, as they h ... Physical mapping of the bovine immunoglobulin heavy chain constant region gene locus.: ... which allowed us to make a contig of the genes within the bovine IGHC locus. The genes are arranged in a 5'-JH-7 kb-mu-5 kb- ... Physical mapping of the bovine immunoglobulin heavy chain constant region gene locus.. Authors * Zhao, Yaofeng ...https://www.mysciencework.com/publication/show/physical-mapping-bovine-immunoglobulin-heavy-chain-constant-region-gene-locus-fa0d3c80
Protocols and Video Articles Authored by Yuji Mishina (Translated to Hindi)
Previously, we mapped the locus responsible for the disease on the distal end of bovine chromosome 6. Here, we narrowed the ... critical region to approximately 2 cM by using linkage analysis, constructed a BAC and YAC contig covering this region, and ... These findings indicate that LBN is responsible for bovine chondrodysplastic dwarfism and has a critical role in a skeletal ... We have also identified a causative gene LIMBIN for bovine chondrodysplastic dwarfism (bcd) that is later identified as the ...https://www.jove.com/author/Yuji_Mishina?language=Hindi
Identification of Telosma mosaic virus infection in Passiflora edulis and its impact on phytochemical contents | Virology...
siRNAs were assembled de novo into long contigs using Velvet software with a k-mer of 17 or 19. Assembled contigs were used to ... Single-base resolution maps along with viral genome were created using Bowtie tools and in-house Perl scripts. ... the protein content in the supernatant was detected with the method of the Folin-Phenol reagent using bovine serum albumin (BSA ... 2d, down panel). Furthermore, the 8 longer contigs assembled with Velvet software with a k-mer of 17 or 19 covered 73.2% of the ...https://virologyj.biomedcentral.com/articles/10.1186/s12985-018-1084-6
The major histocompatibility complex in Old World camelids and low polymorphism of its class II genes | BMC Genomics | Full Text
Physical mapping located the MHC region to the chromosome 20 in Camelus dromedarius. Cytogenetic and comparative analyses of ... The objectives of this study were to identify, map and characterize the MHC region of Old World camelids, with special ... II and III regions and likely to be located within the same contigs were identified in the assembled reference bovine genome ... Physical mapping of the MHC region. The two FISH probes targeting the two MHC regions mapped to dromedary chromosome 20q12 ...https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-016-2500-1
A BAC contig map over the proximal approximately 3.3 Mb region of horse chromosome 21. Brinkmeyer-Langford C, Raudsepp T, ... A high resolution RH map of the bovine major histocompatibility complex. Brinkmeyer-Langford CL, Childers CP, Fritz KL, ... Bovine Genome Sequencing and Analysis Consortium, Elsik CG, Tellam RL, Worley KC, Gibbs RA, Muzny DM, Weinstock GM, Adelson DL ... A 1.3-Mb interval map of equine homologs of HSA2. Wagner ML, Raudsepp T, Goh G, Agarwala R, Schaffer AA, Dranchak PK, ...http://vetmed.tamu.edu/pda/directorydetail?userid=227
Frontiers | Micropathogen Community Analysis in Hyalomma rufipes via High-Throughput Sequencing of Small RNAs | Frontiers in...
Reads that could not be mapped were once more assembled using the SOAP software. The assembly was repeated twice until contigs ... bovine anaplasmosis, tick typhus (caused by Rickettsia spp.) and bovine babesiosis using the specific primers listed in Table 4 ... Mapping of micropathogen sequencing reads to genomes. (A) Cleaned sequence reads were mapped to the SCRV virus genome (GenBank ... The maximum contig length was 901 bp, and homology analysis was performed for these contigs at the nucleotide and protein ...https://www.frontiersin.org/articles/10.3389/fcimb.2017.00374/full
Genome-wide Analysis of Epstein-Barr Virus (EBV) Integration and Strain in C666-1 and Raji Cells
Then realign the clipped part of the contigs to the hybrid reference genome. If the partially mapped part and the clipped part ... C666-1 and Raji were grown in RPMI 1640 (HyClone, Logan, UT, USA) plus 10% fetal bovine serum (GIBCO, Grand Island, NY, USA) ... Total raw data mapped to human (bp). 182,230,285,487. 183,866,611,697. Total raw data mapped to EBV (bp). 117,172,040. ... LPLUNC1 inhibits nasopharyngeal carcinoma cell growth via down-regulation of the MAP kinase and cyclin D1/E2F pathways. PLoS ...http://www.jcancer.org/v07p0214.htm
Genome project - Wikipedia
For a bacterium containing a single chromosome, a genome project will aim to map the sequence of that chromosome. For the human ... The resulting (draft) genome sequence is produced by combining the information sequenced contigs and then employing linking ... see Chimpanzee Genome Project Domestic Cow Bovine Genome Honey Bee Genome Sequencing Consortium Horse genome Human microbiome ... Scaffolds are positioned along the physical map of the chromosomes creating a "golden path". Originally, most large-scale DNA ...https://en.wikipedia.org/wiki/Genome_project
ACEDB Genome Database Software FAQ
GMAP genetic map PMAP physical map (Sulston contig style) SEQ DNA sequence - symbolic, features, sequence and translation GRID ... 1993 Database : ? Species : Bovine PI : Leland Ellis Last_update : Sept. 1993 Database : ? Species : Sorghum PI : Leland Ellis ... Each object is stored as a tree, following a hierarchical structure for the class (called the 'model'). Maps are derived from ... Computer staff for the UC Berkeley Drosophila physical mapping project the LBL Human Chromosome 21 project, and the LBL plant ...http://www.bio.net/bionet/mm/acedb/1993-November/002783.html
Proceedings of the 15th Annual UT-KBRIN Bioinformatics Summit 2016 | BMC Bioinformatics | Full Text
When the short reads from three horses were mapped to these EquCab3 bacterial contigs, 217 contigs had very low (,5%) mapping ... Here we present a summary of non-bovine alleles that can be measured across these species relative to the Bovine reference ... and we calculated mapping coverage for each Kraken-flagged contig. Reads with mapping quality ,10 were excluded from the ... The 217 contigs in EquCab3 containing significant BLAST hits to bacterial proteins, as well as very few mapped short reads from ...https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1154-y
Molecular Cytogenetics and Genomics Laboratory - Texas A&M Veterinary Medicine & Biomedical Sciences
A BAC contig map over the proximal approximately 3.3 Mb region of horse chromosome 21. Cytogenet. Genome Res. 120:164-172. ... Assignment of six genes to bovine chromosomes 5 and 16 by fluorescence in situ hybridization, radiation hybrid mapping and ... A High Resolution RH Map of the Bovine Major Histocompatibility Complex. BMC Genomics, 10:182-191. ... Evaluation of Compass as a comparative mapping tool for ESTs using horse radiation hybrid maps. Anim Genet 38:294-302 ...https://vetmed.tamu.edu/labs/cytogenics-genomics/publications
TIMPs of parasitic helminths - a large-scale analysis of high-throughput sequence datasets | Parasites & Vectors | Full Text
... were mapped to the longest contigs encoding individual putative TIMP proteins using the program SOAP2 . Briefly, raw ... bovine and deer liver fluke, respectively) (http://www.gasserlab.org). The algorithms BLASTp  and InterProScan  were ... To provide a relative assessment of transcript abundance, the number of raw reads that mapped to each sequence was normalized ... Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B: Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat ...https://parasitesandvectors.biomedcentral.com/articles/10.1186/1756-3305-6-156
Fallacy of the Unique Genome: Sequence Diversity within Single Helicobacter pylori Strains
SOLiD mate pairs were mapped to these contigs to determine the ordering and orientation of the larger contigs, with shorter ... fetal bovine serum (FBS), 25% glycerol, and 5% dimethyl sulfoxide; and frozen at −80°C. To resuscitate freezer stocks, a small ... of the pairs mapped uniquely to a single contig, 37% of the pairs mapped to multiple locations, and 18% of the pairs connected ... For reads mapping within a contig, the mean length of the mate pair was 2,053 bp, with a standard deviation of 399 bp. After ...http://pubmedcentralcanada.ca/pmcc/articles/PMC5358919/
Molecular Epidemiology and Genome Dynamics of New Delhi Metallo-β-Lactamase-Producing Extraintestinal Pathogenic Escherichia...
Contig-layout-authenticator (CLA): a combinatorial approach to ordering and scaffolding of bacterial contigs for comparative ... fetal bovine serum (FBS). Cells were seeded in 24-well plates and grown until a monolayer was obtained. Infection was done at a ... A similar heat map was generated for putative resistance-related genes after comparison with the Comprehensive Antibiotic ... The contigs were then ordered and scaffolded using an in-house workbench, Contig-Layout-Authenticator (39), and the resulting ...https://aac.asm.org/content/60/11/6795
Disruption of acvrl1 increases endothelial cell number in zebrafish cranial vessels | Development
We meiotically mapped the vbg locus to an interval of 0.035 cM on LG23 and established a physical contig across this region ... P19 cells maintained in DMEM with 10% fetal bovine serum and antibiotics were transiently transfected with Smad2/3-responsive ... Meiotic and physical map of the vbg interval on LG23. Markers that were meiotically mapped are shown in bold at the top of the ... 3). A physical contig anchored at the z14967-end of the interval was generated, and meiotic mapping of single nucleotide ...http://dev.biologists.org/content/129/12/3009