The Amino Acid Motif L/IIxxFE Defines a Novel Actin-Binding Sequence in PDZ-RhoGEF
Endophytic Life Strategies Decoded by Genome and Transcriptome Analyses of the Mutualistic Root Symbiont Piriformospora indica
Amino acid motifs in P. indica In order to screen the genome of P. indica for known and unknown motifs in the amino acid ... A search for motifs (Table S12 and S13) in the amino acid sequences of these heterogeneous proteins identified a group of 25 ... amino acid permeases, transmembrane amino acid transporter proteins, nucleobase cation symporters, ABC-2 type transporters, and ... 1) Secreted proteins were predicted using TargetP and SignalP as described in material and methods, amino acid motifs in P. ...http://pubmedcentralcanada.ca/pmcc/articles/PMC3192844/
A survey of machine learning methods for secondary and supersecondary protein structure prediction. - NextBio article
Amino Acid Motifs Artificial Intelligence Computational Biology Models, Molecular Protein Structure, Secondary Proteins ...http://www.nextbio.com/b/search/article.nb?id=22987348
A Screen for New Trithorax Group Genes Identified little imaginal discs, the Drosophila melanogaster Homologue of Human...
... a bipartite nuclear localization signal is found at amino acids 1599-1616. Each of these amino acid motifs is found in human ... This domain has a previously described amino acid motif called ARID (AT-rich interaction domain; Herrscheret al. 1995). Among ... Amino acid motifs were determined using the Profilescan program and PsortII programs. Protein alignments were performed on the ... The protein contains a number of amino acid motifs found in both trithorax and Polycomb group genes. It contains an N-terminal ...http://www.genetics.org/content/156/2/645
Stabilin-1 localizes to endosomes and the trans-Golgi network in human macrophages and interacts with GGA adaptors.
Amino Acid Motifs/immunology, Antigens; CD/immunology, Brefeldin A/pharmacology, Carrier Proteins/immunology/metabolism, Cell ...http://uu.diva-portal.org/smash/record.jsf?pid=diva2:96016
Glycogen synthase kinase 3beta interaction protein functions as an A-kinase anchoring protein - Publikationsserver der...
Amino Acid Motifs/physiology. MESH. Cell Line, Tumor. MESH. Cyclic AMP-Dependent Protein Kinases/metabolism. MESH. ... Our bioinformatics and peptide array screening approaches based on this signature motif identified GSKIP (glycogen synthase ... of the interactions between the dimerization and docking domain and various PKA-binding domains yielded a generalized motif ...https://epub.uni-regensburg.de/30633/
Amphioxus (Branchiostoma floridae) has orthologs of vertebrate odorant receptors | BMC Evolutionary Biology | Full Text
Key amino acid motifs. To identify amino acid motifs common in vertebrate and B. floridae ORs, we constructed an alignment of ... By exposing conserved amino acid motifs and testing the ability of those motifs to discriminate between ORs and non-OR GPCRs, ... from which a list of candidate amino acid motifs was generated. To determine whether these motifs were present in ORs, non-ORs ... Conserved amino acid motifs have previously been noted in alignments of human, mouse and zebrafish OR sequences [13, 27, 30, 31 ...https://0-bmcevolbiol-biomedcentral-com.brum.beds.ac.uk/articles/10.1186/1471-2148-9-242
The diverse evolutionary pattern of ESEs and ESSs in as | Open-i
Amino Acid Motifs. *Animals. *DNA Mutational Analysis. *Enhancer Elements, Genetic. *Gene Silencing ...https://openi.nlm.nih.gov/detailedresult.php?img=PMC3091315_gb-2009-10-11-r120-3&req=4
The distribution of mIMRs in the immature Gag protein [ | Open-i
The gag gene of HIV-1 [GenBank:K03455] was selected for the study because its protein motifs and structural components are well ... Nucleic Acid Conformation*. *Protein Conformation*. *Tandem Repeat Sequences/genetics*. *gag Gene Products, Human ... The gag gene of HIV-1 [GenBank:K03455] was selected for the study because its protein motifs and structural components are well ... The distribution of IMRs and their relationship to structural and functional motifs in the protein that they translate, suggest ...https://openi.nlm.nih.gov/detailedresult.php?img=PMC2211468_1743-422X-4-113-1&req=4
Conserved expression patterns associated with functiona | Open-i
Conserved expression patterns associated with functional binding site motif variants (BSMVs).The y-axis of each plot is the ... Amino Acid Motifs. *Binding Sites. *Computational Biology/methods. *Genome, Fungal. *Genomics. *Models, Statistical ... Bottom Line: To accomplish this, we statistically detect motif variants with effects that differ among environments.We find ... Bottom Line: To accomplish this, we statistically detect motif variants with effects that differ among environments.We find ...https://openi.nlm.nih.gov/detailedresult.php?img=PMC3285675_pone.0032274.g003&req=4
A 20 amino acid motif in the β subunit loop is sufficient for clustering. A , CD4-β loop chimeras were generated with either ... First, we tested CD4-chimeras containing the first (amino acids 333-406) or second halves (aa 407-469) of the β loop (Fig. 2). ... By making deletions in the β loop we defined a 20 amino-acid sequence that is sufficient for clustering. The sequence contains ... Using chimeric proteins consisting of CD4 fused to each of the AChR subunit intracellular loops, we identify a 20 amino acid ...http://www.jneurosci.org/content/28/45/11468
Heme regulates B-cell differentiation, antibody class switch, and heme oxygenase-1 expression in B cells as a ligand of Bach2 |...
Regulation by heme of mitochondrial protein transport through a conserved amino acid motif. Science 1993;259(5094):522-525. ... Bach1 possesses at least 4 Cys-Pro motifs (CP motifs)21,22 involved in heme-binding. Heme binds to Bach1 to inhibit its DNA ... 5 Although amino acid residues involved in the heme binding represented by the 432-nm peak remain to be identified, our ... Involvement of heme regulatory motif in heme-mediated ubiquitination and degradation of IRP2. Mol Cell 2005;19(2):171-181. ...http://www.bloodjournal.org/content/117/20/5438?ijkey=2a319d5cc8692e839765f28e4f62f5d43c7eeea1&keytype2=tf_ipsecsha&sso-checked=true
Malleability of protein folding pathways : a simple reason for complex behaviour.
Amino Acid Motifs, Models; Molecular, Protein Conformation, Protein Folding, Proteins/*chemistry/*metabolism, Signal ...http://su.diva-portal.org/smash/record.jsf?faces-redirect=true&language=sv&searchType=SIMPLE&query=&af=%5B%5D&aq=%5B%5B%5D%5D&aq2=%5B%5B%5D%5D&aqe=%5B%5D&pid=diva2%3A188993&noOfRows=50&sortOrder=author_sort_asc&sortOrder2=title_sort_asc&onlyFullText=false&sf=all
Inhibition of the binding activity of recombinant PB2 w | Open-i
Amino Acid Motifs/genetics. *Amino Acid Sequence. *Animals. *Binding Sites/genetics. *Cell Line, Tumor ... In contrast, anacardic acid and garcinol drastically inhibited the interaction, and concentrations of anacardic acid greater ... In contrast, anacardic acid and garcinol drastically inhibited the interaction, and concentrations of anacardic acid greater ... p , 0.01; DMSO versus anacardic acid. †, p , 0.05 and ††, p , 0.01; DMSO versus garcinol. Mentions: One HAT, p300/cAMP-response ...https://openi.nlm.nih.gov/detailedresult.php?img=PMC4155666_zbc0411495550004&req=4
Frontiers | Microbial effectors target multiple steps in the salicylic acid production and signaling pathway | Plant Science
Among these, salicylic acid signaling is an important pathway because of its ability to trigger plant cell death. As biotrophic ... Here we review the strategies prokaryotic pathogens have developed to target salicylic acid biosynthesis and signaling, and ... Here we review the strategies prokaryotic pathogens have developed to target salicylic acid biosynthesis and signaling, and ... they have evolved efficient strategies to downregulate salicylic acid signaling by virulence effectors, which can be proteins ...https://www.frontiersin.org/articles/10.3389/fpls.2015.00349/full
1A ). In almost all the peptides, the amino acid motif GGL was seen. ... A, amino acid sequences of peptide inserts identified with the anti-CEA antibody Col-1 in biopanning procedure were subjected ... Deduced amino acid sequences were subjected to the multiple algorithm of the Vector NTI Suite and a phylogenetic tree was ... nonessential amino acids, and 1 mmol/L sodium pyruvate (Invitrogen). Cells were loosened with Na-EDTA and 107 tumor cells were ...http://clincancerres.aacrjournals.org/content/13/21/6501
... we observed motif sharing among insert amino acid sequences of tumor-homing clones and identification of those motifs in human ... The highlighted motif-sharing regions having amino acids with exact matches are shown in white letters and those with ... Several amino acid motifs were identified among tumor-homing phage clones, indicating nonrandom tumor accumulation. Phage ... Table 2 shows amino acid sequences, their frequency, and possible motifs of phage clones obtained from surgically harvested ...http://cancerres.aacrjournals.org/content/66/15/7724
Vibrational spectroscopy of a non-aromatic amino acid-based model peptide: Identification of the gamma-turn motif of the...
Vibrational spectroscopy of a non-aromatic amino acid-based model peptide: Identification of the gamma-turn motif of the ...http://repository.ubn.ru.nl/handle/2066/98878
SMART: Secondary literature for WW domain
These conserved cytoplasmic regions contain a common amino acid motif, Asn-Pro-Thr-Tyr, which has previously been shown to ... A repeating amino acid motif shared by proteins with diverse cellular roles. ... Many protein-protein interactions involve amino acid sequences containing proline-rich motifs and even polyproline stretches. ... of FBPs that contains one or two copies of a 26 amino acid homology region that has been recently termed the WWP or WW motif. ...http://smart.embl-heidelberg.de/smart/show_secondary.cgi?domain=WW
Cytochrome c - Wikipedia
All cytochrome c proteins contain a characteristic CXXCH (cysteine-any-any-cysteine-histidine) amino acid motif that binds heme ... Its primary structure consists of a chain of about 100 amino acids. Many higher-order organisms possess a chain of 104 amino ... Its amino acid sequence is highly conserved in eukaryotes, differing by only a few residues. In more than thirty species, 34 of ... Amino acid sequences in cytochrome c proteins from different species, adapted from Strahler, Arthur; Science and Earth History ...https://en.wikipedia.org/wiki/Cytochrome_C
OriGene - RGS18 (NM 130782) cDNA Clone
This protein is contains a conserved, 120 amino acid motif called the RGS domain. The protein attenuates the signaling activity ...http://www.origene.com/human_cdna/NM_130782/SC321112.aspx
Peter Mayerhofer - University of Surrey - Guildford
The in-frame deletion of three amino acids (del78-80LLR) within the proposed targeting motif in two patients suffering from X- ... amino acids 67-110) is not sufficient for peroxisomal targeting by itself. Additionally, the NH2-terminal 66 amino acids ... Our data define the targeting region of human adrenoleukodystrophy protein containing a highly conserved 14-amino-acid motif. ... The required region contains a 14-amino-acid motif (71-84) conserved between the adrenoleukodystrophy protein and human ...https://www.surrey.ac.uk/biochemical/People/peter_mayerhofer/
Similar articles for PubMed (Select 19002558) - PubMed - NCBI
The influence of HLA-DRB1 alleles encoding the DERAA amino acid motif on radiological outcome in rheumatoid arthritis. ...https://www.ncbi.nlm.nih.gov/pubmed?linkname=pubmed_pubmed&from_uid=19002558
Frontiers | Melanoma Biomolecules: Independently Identified but Functionally Intertwined | Oncology
Gal-3 also contains an amino acid motif, NWGR, which is involved in its anti-apoptotic function. This motif is also found in ... The 76 amino acid cytoplasmic domain contains threonines that can be phosphorylated by PKCα and ERK 1,2 (residues 2256 and 2314 ... MCAM-long contains a 63 amino acid intracellular domain including two putative endocytic domains and five potential protein ... a central region of 15 CSPG4/NG2 repeats containing 7 Ser-Gly motifs, one of which is the consensus motif SGXG for ...https://www.frontiersin.org/articles/10.3389/fonc.2013.00252/full
Frontiers | HIV-1 Vif: a guardian of the virus that opens up a new era in the research field of restriction factors |...
... protein and amino acid motifs for binding to Vif-interacting proteins. Pink indicates binding motifs for A3G; light blue ... A patch of positively charged amino acids surrounding the human immunodeficiency virus type 1 Vif SLVx4Yx9Y motif influences ... By comparing amino acids residues and preparing chimeric APOBEC3G between human and agm APOBEC3G, they identified D128 as the ... Bogerd, H. P., Doehle, B. P., Wiegand, H. L., and Cullen, B. R. (2004). A single amino acid difference in the host APOBEC3G ...https://www.frontiersin.org/articles/10.3389/fmicb.2013.00034/full
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