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http://www.jneurosci.org/content/24/26/5982**clustered**the 441 datasets, each**representing**a single time course, by applying the k-means**algorithm**and using a refined ... Identification of differentially expressed genes and**cluster****analysis**. First, the dataset was reduced to 454 clones that showed ... Both of these**clusters****represent**the slightest gene expression changes of our study. Within**cluster**6, genes decrease the most ... 3B, Table 1). Most genes fall into**clusters**that display only slight expression changes (**clusters**2, 4, 5, 6, 7, 10).**Clusters**...###### HCS **clustering** **algorithm** - Wikipedia

... is an

https://en.wikipedia.org/wiki/HCS_clustering_algorithm**algorithm**based on graph connectivity for**Cluster****analysis**, by first**representing**the similarity data in a similarity ... "Survey of**clustering****algorithms**." Neural Networks, IEEE Transactions The CLICK**clustering****algorithm**is an adaptation of HCS ...**clustering****algorithm**(also known as the HCS**algorithm**, and other names such as Highly Connected**Clusters**/Components/Kernels) ... and recursively run HCS**clustering****algorithm**on H and H'. The following animation shows how the HCS**clustering****algorithm**...###### Systematic determination of patterns of gene expression during Drosophila embryogenesis | Genome Biology | Full Text

Systematic

https://genomebiology.biomedcentral.com/articles/10.1186/gb-2002-3-12-research0088**analysis**of rigorously annotated patterns of gene expression will complement and extend the types of**analyses**... that can be used to identify genes involved in developmental processes that have been missed by traditional genetic**analysis**. ... We present an approach for organizing the data by hierarchical**clustering**of annotation terms that allows us to group tissues ... Figure 8**represents**one possible outcome of the**clustering****analysis**of the annotation dataset. Filtering of the genes and ...###### Plus it

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###### Determining requirements for patient-centred care: a participatory concept mapping study | BMC Health Services Research | Full...

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###### Optimization of sequence alignment for simple sequence repeat regions | BMC Research Notes | Full Text

The

https://bmcresnotes.biomedcentral.com/articles/10.1186/1756-0500-4-239**cluster****analysis**resulted in completely different phylogenic trees before and after applying the new**algorithm**(Figure 6). ... These sequences were obtained from 26 plants**representing**26 alleles. The sequences were aligned using the clustalW**algorithm**...**Algorithm**. In this paper, we compare our new**algorithm**for SSR alignment with the common alignment**algorithms**used in other ... However, the phylogenic trees indicated that 50% of the samples showed a similar**cluster**before and after the new**algorithm**...###### GenCLiP: a software program for **clustering** gene lists by literature profiling and constructing gene co-occurrence networks...

... such as those identified by microarray

https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-9-308**analyses**. Literature mining is an important way to assist in this task. Many literature ... We present our software program, GenCLiP (Gene**Cluster**with Literature Profiles), which is based on the methods presented by ... Chaussabel and Sher (Genome Biol 2002, 3(10):RESEARCH0055) that search gene lists to identify functional**clusters**of genes ... An array file is then generated and used to do**clustering****analysis**with the average linkage hierarchical**clustering****algorithm**...###### Microarray **analysis** of Long non-coding RNA expression profiles in human gastric cells and tissues with Helicobacter pylori...

GO and KEGG

https://bmcmedgenomics.biomedcentral.com/articles/10.1186/s12920-015-0159-0**analyses**have indicated that the functions of aberrantly expressed mRNAs in H.pylori infection were related closely ... LncRNA-mRNA co-expression network was constructed based on Pearson correlation**analysis**. Gene Ontology (GO) and KEGG Pathway ...**analyses**of aberrantly expressed mRNAs were performed to identify the related biological functions and pathologic pathways. The ... expression profiles of lncRNAs and mRNAs in GES-1 cells with or without H.pylori infection were explored by microarray**analysis**...###### Performance evaluation of the boundary-layer height from lidar and the weather research and forecasting model at an urban...

... we use a

https://upcommons.upc.edu/handle/2117/78947**cluster****analysis****algorithm**of three-day back-trajectories to determine general synoptic flow patterns over Barcelona, ... Spain arriving at heights of 0.5, 1.5, and 3 km; to**represent**the lower PBL, upper PBL, and lower free troposphere, ... Seven**clusters**are determined at each arriving altitude. Regional recirculations account for 54 % of the annual total at 0.5 km ... Lidar and radiosonde estimated PBL heights are classified under objectively-determined synoptic**clusters**. With the final ...###### Frontiers | Super-resolution imaging of C-type lectin spatial rearrangement within the dendritic cell plasma membrane at fungal...

Contact site CTL

https://www.frontiersin.org/articles/10.3389/fphy.2014.00046/full**clusters**appear as disk-shaped domains of approximately 150-175 nm in diameter. The increase in length scale ... Quantitative**analysis**of confocal and super-resolution images demonstrated that CTL nanodomains become concentrated in the ... Contact site CTL**clusters**appear as disk-shaped domains of approximately 150-175 nm in diameter. The increase in length scale ... Quantitative**analysis**of confocal and super-resolution images demonstrated that CTL nanodomains become concentrated in the ...###### A study on real-time low-quality content detection on Twitter from the users' perspective

To perform the

http://pubmedcentralcanada.ca/pmcc/articles/PMC5549928/**cluster****analysis**, we**represent**the tweets with a set of features (described in details in the later section) and ... We perform EM**algorithm**on harvested low-quality content tweets to divide them into 4 categories. Based on which, we create a ...**Cluster****analysis**of low-quality content. We believe it is necessary to understand users' attitudes and definitions of low- ... We designed a survey according to the**cluster****analysis**and put it online where participants had to answer two questions related ...###### Pyrosequencing-based **analysis** reveals a novel capsular gene **cluster** in a KPC-producing Klebsiella pneumoniae clinical isolate...

Because genes involved in L-rhamnose biosynthesis are absent in humans, this pathway may

https://bmcmicrobiol.biomedcentral.com/articles/10.1186/1471-2180-12-173**represent**potential targets for the ... We report the first description of a cps**cluster**from a Brazilian clinical isolate of a KPC-producing K. pneumoniae. The ... we report the unique genetic organization of the cps**cluster**from K. pneumoniae Kp13, a clinical isolate recovered during a ... of similarity and alignment between RFLP patterns were adapted from Needleman and Wunsch's dynamic programming**algorithm**. By ...###### Visualization of Disciplinary Profiles: Enhanced Science Overlay Maps : Journal of Data and Information Science

... generating new

https://www.degruyter.com/view/j/jdis.2017.2.issue-3/jdis-2017-0015/jdis-2017-0015.xml**clusters**of scientific disciplines, enhancing visualizations, and providing more accessible means for analysts ... Both**cluster**solutions were generated in VOSviewer, using its algorithm⑫. Appendix map A-3 shows the 18-**cluster**basemap. ... By choosing the 18-**cluster**option (Figure A-3) or the five-**cluster**option (Figure 1), one can show the**analysis**at a narrow or ... Prices in €**represent**the retail prices valid in Germany (unless otherwise indicated). Prices are subject to change without ...###### Purdue e-Pubs - The Summer Undergraduate Research Fellowship (SURF) Symposium: Web-Based Interactive Social Media Visual...

Second, we extend the Social Media Analytics and Reporting Toolkit (SMART) to supporting the spatial

https://docs.lib.purdue.edu/surf/2017/presentations/87/**clustering****analysis**and ... findings prove that today's high-resolution geo-located social media platforms can enable new types of human behavior**analysis**... Identified movement patterns are extracted using**clustering****algorithms**and**represented**in a visual and interactive manner. We ... Identified movement patterns are extracted using**clustering****algorithms**and**represented**in a visual and interactive manner. We ...###### The Realities of Races

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http://raceandgenomics.ssrc.org/Marks/**cluster****analysis**, but that is sensitive to the population samples chosen, the individual people ...**representing**them, the demographic history of the populations, the assumptions of the particular**algorithm**, and the patterns of ... based on the assumption that a small sample of Nigerians**represent**"pure Africans," a small sample of Chinese**represent**"pure ... The extremes**represent**the most geographically divergent, not the purest.. In other words, this business has far more to do ...###### **Clustering** bioinformatics tools | Gene expression array **analysis** - OMICtools

Gene

https://omictools.com/clustering-category**clustering****analysis**is found useful for discovering groups of correlated genes potentially co-regulated or associated to ... When applied to published data sets**representing**different cancers or disease outcomes, this**algorithm**constructs XMOTIFS that ... This**algorithm**generates**clusters**of sufficiently large sample sizes as required by the user and can**clusters**applications with ... A**clustering****analysis**platform to promote streamlined evaluation, comparison and reproducibility of**clustering**results in the ...###### Detection of chronic kidney disease and disease progression - Technion Research and Development Foundation Ltd.

... linear discriminant

http://www.freepatentsonline.com/9689826.html**analysis**(LDA),**cluster****analysis**, and nearest neighbor. Each possibility**represents**a separate embodiment ... genetic**algorithms**, and fuzzy logic**algorithms**. Each possibility**represents**a separate embodiment of the present invention. In ... including linear discriminant**analysis**(LDA), and**cluster****analysis**including nearest neighbor. Each possibility**represents**a ... discriminant function**analysis**(DFA), linear discriminant**analysis**(LDA),**cluster****analysis**, and nearest neighbor. 8. The method ...###### clusterMaker: a multi-**algorithm** **clustering** plugin for Cytoscape | BMC Bioinformatics | Full Text

... provides a number of

https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-12-436**clustering****algorithms**and visualizations that can be used independently or in combination for**analysis**and ... clusterMaker is the first Cytoscape plugin to implement such a wide variety of**clustering****algorithms**and visualizations, ... Here we present clusterMaker, a Cytoscape plugin that implements several**clustering****algorithms**and provides network, dendrogram ... and the**cluster****analysis**of the vicinal oxygen chelate (VOC) enzyme superfamily. For scenario one, we explore functionally ...###### A core-attachment based method to detect protein complexes in PPI networks | BMC Bioinformatics | Full Text

Traditional graph

https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-10-169**clustering****algorithms**can also be applied to detect dense**clusters**as protein complexes [9-11]. Markov ... This graph structure modeling is helpful for global**analysis**of PPI data, such as graph**clustering**for protein complex ... in which a vertex in vertex set V**represents**a protein and an edge in edge set E**represents**an interaction between two distinct ... Core-removal**algorithm**. Given a vertex v, if the core graph of G v , CG, is dense enough, core-removal**algorithm**will return it ...###### **Clustering** Similar Points - Stellar Parameter **Analysis** Management - Colby College Wiki

To get better

https://wiki.colby.edu/display/SPAM/Clustering+Similar+Points**clusters**, we first ran principal components**analysis**to compress the data to axes that**represent**almost all of ... K-Means**Algorithm**. *instantiate k means to start with: our**algorithm**divides the data into k equal parts, and selects a random ...**Clusters**are categorical, so it is intuitive to visualize them with color. We made '**cluster**' an option for the color 'axis,' ... One goal of machine learning is to**cluster**data points by identifying similar points. A common method of**clustering**is k-means ...###### Formal concept **analysis** - Wikipedia

... one to use standard definitions and

https://en.wikipedia.org/wiki/Formal_concept_analysis**algorithms**from multidimensional concept**analysis**for computing multidimensional**clusters**. ... where n-dimensional**clusters**of similar values in n-dimensional data are**represented**by n+1-dimensional concepts. This ... Association rule learning**Cluster****analysis**Commonsense reasoning Conceptual**clustering**Concept learning Correspondence**analysis**... The formal concept**analysis**can be used as a qualitative method for data**analysis**. Since the early beginnings of FBA in the ...###### Method of increasing murine ES cell differentiation with PCL2 - Patent # 8252761 - PatentGenius

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###### Stability-based validation of dietary patterns obtained by **cluster** **analysis** | Nutrition Journal | Full Text

A

https://nutritionj.biomedcentral.com/articles/10.1186/s12937-017-0226-9**clustering****algorithm**A with a predefined number of**cluster**k constructs a solution Y of the data set X into k**clusters**(Y := ... Ak(X)). This solution Y is**represented**by an n-dimensional vector of labels Y = (Y1, …, Yn) where Yi = v if the i-th individual ... Formalization of**cluster****analysis**. Let X = (X1, …, Xn) be the dataset of n = 2298 individuals to be**clustered**where Xi is a 45- ... Hennig C.**Cluster**-wise assessment of**cluster**stability. Computational Statistics & Data**Analysis**. 52(1):258-71Google Scholar. ...###### Age-dependent changes in prefrontal intrinsic connectivity | PNAS

... spike waveforms were sorted into separate units using an automated

http://www.pnas.org/content/111/10/3853**cluster****analysis**method based on the KlustaKwik**algorithm**, ... but this**represents**a random source of error for our**analysis**and can only dilute the difference between groups that have ... 2003) Combined**analysis**of DTI and fMRI data reveals a joint maturation of white and grey matter in a fronto-parietal network. ... In fact,**analyses**of the distributions of young and adult cross-correlation strengths (Fig. 1C) revealed that the difference in ...###### Saint Mary's University | Engineering - Faculty and Staff - Directory

...

https://smu.ca/academics/departments/engineering-upcoming-events.html**clustering**, principle component**analysis**and adaptive filtering. The kernel function is employed to map the input space to a ... The term "kernel machine" refers to a family of machine learning**algorithms**that can be used for classification, regression, ... high dimensional feature space which gives the kernel machine the ability to**represent**non-linear relationships in the input ...