Percentaje of mismatches allowed within the tandem repeats: 0 , 0.1 , 0.2 Position. Sequence. ... Tandem Repeats database. Genome: Melissococcus plutonius ATCC 35311. This database allows retrieval of precomputed tandem ... It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be ...http://insilico.ehu.es/microsatellites/index2.php?g=015516
Evolution of Genes - Gene Duplication - Chromosome, Copies, and Called - JRank Articles
Tandem repeats are susceptible to amplification, which is the further increase in the number of copies. This can occur during ... One type of duplication occurs when the RNA transcript of a gene is "reverse transcribed" back into a DNA sequence and ... If the chromosomes each have a tandem repeat, the crossover machinery may line up incorrectly, leaving one homologue with three ... "tandem repeat." This may occur because of errors of the normal recombination machinery that is responsible for DNA repair and ...http://medicine.jrank.org/pages/2224/Evolution-Genes-Gene-Duplication.html
Transposable element - Wikipedia
De novo repeat identification. De novo repeat identification is an initial scan of sequence data that seeks to find the ... This method works best for tandem repeats, but can be used for dispersed repeats as well. However, it is a slow process, making ... A consensus sequence is a sequence that is created based on the repeats that comprise a TE family. A base pair in a consensus ... A.Structure of DNA transposons (Mariner type). Two inverted tandem repeats (TIR) flank the transposase gene. Two short tandem ...http://th.ai/Transposon
SDK2 Full-Length MS Protein Standard - Creative Proteomics
This protein, and a homologous mouse sequence, are very similar to the Drosophila sidekick gene product but the specific ... Fibronectin type III domains are present in both extracellular and intracellular proteins and tandem repeats are known to ... Fibronectin type III domains are present in both extracellular and intracellular proteins and tandem repeats are known to ... This protein, and a homologous mouse sequence, are very similar to the Drosophila sidekick gene product but the specific ...https://www.creative-proteomics.com/product/detail-cpfl327752_7658.htm
Networks of STR haplotypes based on penta- and hexanucl | Open-i
Background: Polymorphic Y chromosome short tandem repeats (STRs) have been widely used in population genetic and evolutionary ... Background: Polymorphic Y chromosome short tandem repeats (STRs) have been widely used in population genetic and evolutionary ... Bottom Line: According to our results, penta- and hexanucleotide repeats have approximately two times lower repeat variance and ... Bottom Line: According to our results, penta- and hexanucleotide repeats have approximately two times lower repeat variance and ...https://openi.nlm.nih.gov/detailedresult.php?img=PMC2748704_pone.0007276.g001&req=4
Tandem repeat sequences - Biology-Online Dictionary
tandem repeat sequences multiple copies of the same dNA base sequence on a chromosome; used as a marker in physical mapping of ... Retrieved from "https://www.biology-online.org/dictionary/index.php?title=Tandem_repeat_sequences&oldid=56355" ...https://www.biology-online.org/dictionary/Tandem_repeat_sequences
Remediated Sequence - 4FQG: Crystal structure of the TCERG1 FF4-6 tandem repeat domain Sequence Report Page
... and Ser7 within the Carboxyl-terminal Domain Repeat. ... Crystal structure of the TCERG1 FF4-6 tandem repeat domain. ... View Sequence & DSSP Image. Download Sequence Chain Image. Chain Info. Polymer: 1. Length: 190 residues. Chain Type: ... Sequence Display for the Entities in PDB 4FQG The graphical representation below shows this entry's sequences as reported in ... Sequence & Structure Relationships. Enable Jmol to view annotations in 3D.. Display Jmol. Redundancy Reduction and Sequence ...http://www.rcsb.org/pdb/explore/remediatedSequence.do?structureId=4FQG
Tandem repeat sequence analysis of staphylococcal protein A (spa) gene in methicillin-resistant Staphylococcus pseudintermedius...
Tandem repeat sequence analysis of staphylococcal protein A (spa) gene in methicillin-resistant Staphylococcus pseudintermedius ... Tandem repeat sequence analysis of staphylococcal protein A (spa) gene in methicillin-resistant Staphylococcus pseudintermedius ... Moodley, Arshnee, Stegger, Marc, Ben Zakour, Nouri L., Fitzgerald, J. Ross and Guardabassi, Luca (2009) Tandem repeat sequence ... Sequence analysis of mecA revealed the occurrence of four alleles (mecA1 to mecA4), which correlated with the geographical ...https://espace.library.uq.edu.au/view/UQ:327598
Analysis of the Short Tandem Repeat Polymorphism D18S51: Allele Frequencies and Sequence Studies | Springer for Research &...
The analysis of Short Tandem Repeat polymorphisms is widely used as a method for human identification. There is a demand to ... Berschick P., Reinhold J. (1996) Analysis of the Short Tandem Repeat Polymorphism D18S51: Allele Frequencies and Sequence ... Analysis of the Short Tandem Repeat Polymorphism D18S51: Allele Frequencies and Sequence Studies. ... The analysis of Short Tandem Repeat polymorphisms is widely used as a method for human identification. There is a demand to ...https://rd.springer.com/chapter/10.1007/978-3-642-80029-0_16
Genes | Free Full-Text | Beyond Junk-Variable Tandem Repeats as Facilitators of Rapid Evolution of Regulatory and Coding...
... namely changes in tandem repeat number. Historically, tandem repeats have been designated as non functional ... Beyond Junk-Variable Tandem Repeats as Facilitators of Rapid Evolution of Regulatory and Coding Sequences. Rita Gemayel 1,2. ... "Beyond Junk-Variable Tandem Repeats as Facilitators of Rapid Evolution of Regulatory and Coding Sequences." Genes 3, no. 3: 461 ... Beyond Junk-Variable Tandem Repeats as Facilitators of Rapid Evolution of Regulatory and Coding Sequences. Genes. 2012; 3(3): ...http://mdpi.com/2073-4425/3/3/461
Toxins | Free Full-Text | Short Toxin-like Proteins Abound in Cnidaria Genomes | HTML
Fundamental features that were emphasized in training ClanTox include cysteines and their spacing along the sequences. Among ... False Detection of TOLIPs Is Associated with Tandem Repeats Sequences. It has been noted that the Nematosella proteome is ... Discovery of Tandem Repeats (TRs). The presence of tandem repeats (TRs) in proteins and transcripts was determined using the ... Table 2. Tandem Repeats (TR) proteins among the top predictions from Nematostella. Each repeat was identified in two proteins ( ...http://mdpi.com/2072-6651/4/11/1367/htm
Transcription of the extended hyp-operon in Nostoc sp. strain PCC 7120.
Tandem Repeat Sequences. Transcription Initiation Site. Transcription, Genetic*. Chemical. Reg. No./Substance: 0/Bacterial ... Sequencing reactions were performed at Macrogen Inc. Computer-assisted sequence analyses were performed using BioEdit Sequence ... The secondary structures formed by the repeated conserved sequences (cs) R2, R3.1, R4 and R5 found within the intergenic ... This sequence has previously been identified in Nostoc sp. strain PCC 7120 as a LTRR (Long Tandemly Repeated Repetitive ...http://www.biomedsearch.com/nih/Transcription-extended-hyp-operon-in/18442387.html
FLT3 | Cancer Genetics Web
Tandem Repeat Sequences. *CCAAT-Enhancer-Binding Proteins. *Nuclear Proteins. *Remission Induction. *Bone Marrow ... ITD assembler: an algorithm for internal tandem duplication discovery from short-read sequencing data.. BMC Bioinformatics. ... RESULTS: The mean count of sequencing reads obtained per sample was 3.81 million and the mean sequencing depth was over 3000X. ... The combined coverage was 141 kb in sequence length. Amplicon libraries were prepared by TruSight myeloid sequencing panel ( ...http://www.cancerindex.org/geneweb/FLT3.htm
NPM1 | Cancer Genetics Web
Tandem Repeat Sequences. *Bone Marrow. Tag cloud generated 16 March, 2017 using data from PubMed, MeSH and CancerIndex ... To verify the results, we employed traditional Sanger sequencing and next-generation transcriptome sequencing. With the use of ... Using direct sequencing, we analyzed JAK2 (exons 12 and 14); CBL (exons 7, 8 and 9); NPM1 (exon 12) and the entire RUNX1 in 88 ... The performed sequencing analysis allowed the identification of two additional rare mutations (I and ZE). All of the mutations ...http://www.cancerindex.org/geneweb/NPM1.htm
Frontiers | De Novo Sequencing and Analysis of Lemongrass Transcriptome Provide First Insights into the Essential Oil...
Also, simple sequence repeats (SSRs) were found in the transcriptome with many linked to terpene pathway genes including the ... Also, simple sequence repeats (SSRs) were found in the transcriptome with many linked to terpene pathway genes... ... by employing Illumina sequencing. Mining of transcriptome data and subsequent phylogenetic analysis led to identification of ... by employing Illumina sequencing. Mining of transcriptome data and subsequent phylogenetic analysis led to identification of ...https://www.frontiersin.org/articles/10.3389/fpls.2016.01129/full
KAKEN - Research Projects | Development of a new cell therapy by adoptive transfer of regulatory T cells to induce...
Publications] Sato Y, et al.: 'Analysis of microchimerism in peripheral blood by short tandem repeated sequences immediately ... Publications] Sato Y, et al.: 'Analysis of microchimerism in peripheral blood by short tandem repeated sequences immediately ... Publications] Sato Y, et al.: 'Analysis of microchimerism in peripheral blood by short tandem repeated sequences immediately ... Publications] Yamamoto S, et al.: 'A successful treatment of positive cross-match by treatment with postoperative repeated ...https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-14570455/
acute promyelocytic leukemia childhood 2005:2010[pubdate] *count=100 - BioMedLib™ search engine
Tandem Repeat Sequences. fms-Like Tyrosine Kinase 3 / blood. fms-Like Tyrosine Kinase 3 / genetics ... MeSH-minor] Amino Acid Sequence. Base Sequence. Chromosomes, Human, Pair 15. Chromosomes, Human, Pair 9. Cytogenetics. Humans. ... Molecular Sequence Data. Reverse Transcriptase Polymerase Chain Reaction. Translocation, Genetic. *[Email] Email this result ... We demonstrate here a striking sequence of events, which include a covert, protracted preleukemic phase characterized by a ...http://www.bmlsearch.com/?kwr=acute+promyelocytic+leukemia+childhood+2005:2010%5Bpubdate%5D&cxts=100&stmp=b0
Characterization of the SeqAΔ(41-59)-A25R mutant. (a | Open-i
Structural insights into the cooperative binding of SeqA to a tandem GATC repeat. ... b) Electrophoretic mobility shift assay of SeqAΔ(41-59)-A25R with DNAs containing two hemimethylated GATC sequences separated ... Structural insights into the cooperative binding of SeqA to a tandem GATC repeat. ... We present here the crystal structure of a dimeric mutant of SeqA [SeqADelta(41-59)-A25R] bound to tandem hemimethylated GATC ...https://openi.nlm.nih.gov/detailedresult.php?img=PMC2691817_gkp151f1&req=4
The distribution of mIMRs in the immature Gag protein [ | Open-i
Background: A DNA mirror repeat is a sequence segment delimited on the basis of its containing a center of symmetry on a single ... Background: A DNA mirror repeat is a sequence segment delimited on the basis of its containing a center of symmetry on a single ... Tandem Repeat Sequences/genetics*. *gag Gene Products, Human Immunodeficiency Virus/chemistry*. Minor ... The sequence spans in MA and CA that do not contain mIMRs are illustrated in Figure 1. These regions are both highly reactive ...https://openi.nlm.nih.gov/detailedresult.php?img=PMC2211468_1743-422X-4-113-1&req=4
Patent US5175082 - Method of characterizing genomic dna - Google Patents
Repeat or Tandem Repeat (Sequence). A polynucleotide sequence which is perfectly or imperfectly repeated in series. In general ... The consensus repeat sequence of pλg3 is also shown in FIG. 2. Each repeat sequence is aligned with the core sequence, with ... comprise tandem repeats of a particular sequence such sequence will in general be repeated at least 3 times and such repeats ... the tandem repeats may be perfect repeats or imperfect repeats or a mixture of perfect and imperfect repeats. There are ...http://www.google.com.au/patents/US5175082?hl=en&output=html_text
RCSB PDB - Protein Feature View - Transcriptional regulator ATRX - P46100 (ATRX HUMAN)
Users can perform simple and advanced searches based on annotations relating to sequence, structure and function. These ... Binds to DNA tandem repeat sequences in both telomeres and euchromatin and in vitro binds DNA quadruplex structures. May help ... and many other details related to sequence mismatches. Icons represent a number of different sequence modifications that can be ... represents expression tags that have been added to the sequence. The 'E' icon E. represents an engineered mutation. However, ...http://www.rcsb.org/pdb/protein/P46100
Patent EP2287307A2 - Materials and methods for identifying and analyzing intermediate tandem ... - Google Patents
... sequence is a region of a DNA sequence containing at least one five to seven base repeat unit appearing in tandem at least two ... The present invention is directed to materials and methods for the identification and analysis of intermediate tandem repeat ... sequences in DNA, wherein an intermediate tandem repeat (ITR) ... repeat sequence is a pentanucleotide tandem repeat sequence.. * ... intermediate tandem repeat sequence is a region of the DNA marker which contains the repeat unit sequence repeated in tandem at ...http://www.google.com.au/patents/EP2287307A2?cl=en
MUC1 (EMA) is preferentially expressed by ALK positive anaplastic large cell lymphoma, in the normally glycosylated or only...
A short sequence, within the amino acid tandem repeat of a cancer-associated mucin, contains immunodominant epitopes. Int J ... "Epitope fingerprinting" using overlapping 20-mer peptides of the MUC1 tandem repeat sequence. Tumor Biol 1998;19(suppl 1):35-45 ... A highly immunogenic region of a human polymorphic epithelial mucin expressed by carcinomas is made up of tandem repeats. J ... The five anti-MUC1 monoclonal antibodies selected are all directed at the immunodominant tandem repeat region of the protein ...http://jcp.bmj.com/content/54/12/933
The cell biology of disease: FSHD: copy number variations on the theme of muscular dystrophy
A novel tandem repeat sequence located on human chromosome 4p: isolation and characterization. Genomics. 42:278-283 10.1006/ ... There are sequences homologous to D4Z4 on several human chromosomes (Lyle et al., 1995). On chromosome 10q26 there is a repeat ... Analysis of the tandem repeat locus D4Z4 associated with facioscapulohumeral muscular dystrophy. Hum. Mol. Genet. 3:1287-1295 ... Epigenetics of a tandem DNA repeat: chromatin DNaseI sensitivity and opposite methylation changes in cancers. Nucleic Acids Res ...http://pubmedcentralcanada.ca/pmcc/articles/PMC3002039/?lang=en-ca
New/Updated Arabidopsis DNA 20-May-2000
... tandem repeat sequence. AB033594 AB033594 772bp DNA PLN 29-APR-2000 Arabidopsis thaliana transposable element Tnat2 DNA, tandem ... AC007797 AC007797 119942bp DNA PLN 16-MAY-2000 Arabidopsis thaliana chromosome I BAC F6F9 genomic sequence, complete sequence. ... AC026237 AC026237 90498bp DNA PLN 16-MAY-2000 Arabidopsis thaliana chromosome I BAC F17F16 genomic sequence, complete sequence ... AC036104 AC036104 55707bp DNA PLN 12-MAY-2000 Arabidopsis thaliana chromosome 1 BAC F16F4 sequence, complete sequence. HTG. ...http://www.bio.net/bionet/mm/arab-gen/2000-May/007838.html
Download our free solidary book to support research on VHL disease