Welcome to CDC stacks | Identification of Melioidosis Outbreak by Multilocus Variable Number Tandem Repeat Analysis - 17415 |...
Minisatellite Repeats MLST MLVA Molecular Sequence Data Outbreak Phylogenetic Analysis Research Sequence Analysis, DNA VNTR ... Multilocus variable number tandem repeat analysis of a Burkholderia mallei strain isolated from a diseased dromedary in Bahrain ... We developed a simplified 4-locus multilocus variable number tandem repeat analysis (MLVA-4) for rapid typing and compared ... Base Sequence Burkholderia Pseudomallei Disease Outbreaks Electrophoresis, Gel, Pulsed-Field Humans Melioidosis ...https://stacks.cdc.gov/view/cdc/17415
Identification and topology of variant sequences within individual repeat domains of the human epithelial tumor mucin MUC1. -...
... that the variable number of tandem repeats domain has evolved as a recent expansion of sequence variable super-repeats. ... sequence variation 2), P--,A (sequence variation 3), and P--,T (sequence variation 4) were identified by sequencing of ... peripheral regions of the variable number of tandem repeats domain. Minisatellite variant repeat analyses were performed with ... Within the peripheral regions, sequence variations 1-4 occur at high incidence and show a nearly constant repeat topology in ...https://www.semanticscholar.org/paper/Identification-and-topology-of-variant-sequences-w-Engelmann-Baldus/2d5c4519062cd38b6db659a0c005754337761395
Phylogenetic Analysis of Enterohemorrhagic Escherichia coli O157, Germany, 1987-2008 - Volume 16, Number 4-April 2010 -...
Multilocus variable number tandem repeat analysis (MLVA) is a subtyping technique for characterizing human pathogenic bacteria ... Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 1999;27:573-80. DOIPubMed ... by using Tandem Repeats Finder software (33). Subsequently, the length of the in silico-determined repeats was subtracted from ... Multilocus variable-number tandem repeat analysis distinguishes outbreak and sporadic Escherichia coli O157:H7 isolates. J Clin ...https://wwwnc.cdc.gov/eid/article/16/4/09-1361_article
Tandem repeat sequences - Biology-Online Dictionary
tandem repeat sequences multiple copies of the same dNA base sequence on a chromosome; used as a marker in physical mapping of ... Retrieved from "https://www.biology-online.org/dictionary/index.php?title=Tandem_repeat_sequences&oldid=56355" ...https://www.biology-online.org/dictionary/Tandem_repeat_sequences
Remediated Sequence - 4FQG: Crystal structure of the TCERG1 FF4-6 tandem repeat domain Sequence Report Page
... and Ser7 within the Carboxyl-terminal Domain Repeat. ... Crystal structure of the TCERG1 FF4-6 tandem repeat domain. ... View Sequence & DSSP Image. Download Sequence Chain Image. Chain Info. Polymer: 1. Length: 190 residues. Chain Type: ... Sequence Display for the Entities in PDB 4FQG The graphical representation below shows this entry's sequences as reported in ... Sequence & Structure Relationships. Enable Jmol to view annotations in 3D.. Display Jmol. Redundancy Reduction and Sequence ...http://www.rcsb.org/pdb/explore/remediatedSequence.do?structureId=4FQG
Characterization of Erwinia amylovora strains from Middle Atlas Mountains in Morocco by PCR based on tandem repeat sequences
... ... Characterization of Erwinia amylovora strains from Middle Atlas Mountains in Morocco by PCR based on tandem repeat sequences. ... strains isolated from the Middle Atlas Mountains in Morocco have been characterized using sequences from tandem repeat of ... Three VNTR sequences were identified and used for studying the genetic diversity of the strains using a PCR fingerprinting ...http://redivia.gva.es/handle/20.500.11939/5352
Tandem repeat sequence analysis of staphylococcal protein A (spa) gene in methicillin-resistant Staphylococcus pseudintermedius...
Tandem repeat sequence analysis of staphylococcal protein A (spa) gene in methicillin-resistant Staphylococcus pseudintermedius ... Tandem repeat sequence analysis of staphylococcal protein A (spa) gene in methicillin-resistant Staphylococcus pseudintermedius ... Moodley, Arshnee, Stegger, Marc, Ben Zakour, Nouri L., Fitzgerald, J. Ross and Guardabassi, Luca (2009) Tandem repeat sequence ... Sequence analysis of mecA revealed the occurrence of four alleles (mecA1 to mecA4), which correlated with the geographical ...https://espace.library.uq.edu.au/view/UQ:327598
Organization of DNA sequences highly repeated in tandem in rice genomes. - Semantic Scholar
The DNA fragments containing the repeated sequences in Nipponbare were then cloned into lambda EMBL3, and sequences of nine ... Gene conversion within the repeated sequences might have further diversified their sequences. ... demonstrating that this sequence occurs in tandem in the genome. The copy number of the sequence estimated by dot blot ... Each repeating unit showed sequence divergency mostly by substitution of bases in a range from 3% to 7%, when compared with a ...https://www.semanticscholar.org/paper/Organization-of-DNA-sequences-highly-repeated-in-in-Ohtsubo-Umeda/a94979ce68cfc9cda6c95c775cfc5afbcf0af5bc
Analysis of the Short Tandem Repeat Polymorphism D18S51: Allele Frequencies and Sequence Studies | Springer for Research &...
The analysis of Short Tandem Repeat polymorphisms is widely used as a method for human identification. There is a demand to ... Berschick P., Reinhold J. (1996) Analysis of the Short Tandem Repeat Polymorphism D18S51: Allele Frequencies and Sequence ... Analysis of the Short Tandem Repeat Polymorphism D18S51: Allele Frequencies and Sequence Studies. ... The analysis of Short Tandem Repeat polymorphisms is widely used as a method for human identification. There is a demand to ...https://rd.springer.com/chapter/10.1007/978-3-642-80029-0_16
Genes | Free Full-Text | Beyond Junk-Variable Tandem Repeats as Facilitators of Rapid Evolution of Regulatory and Coding...
... namely changes in tandem repeat number. Historically, tandem repeats have been designated as non functional ... Beyond Junk-Variable Tandem Repeats as Facilitators of Rapid Evolution of Regulatory and Coding Sequences. Rita Gemayel 1,2. ... "Beyond Junk-Variable Tandem Repeats as Facilitators of Rapid Evolution of Regulatory and Coding Sequences." Genes 3, no. 3: 461 ... Beyond Junk-Variable Tandem Repeats as Facilitators of Rapid Evolution of Regulatory and Coding Sequences. Genes. 2012; 3(3): ...http://mdpi.com/2073-4425/3/3/461
Toxins | Free Full-Text | Short Toxin-like Proteins Abound in Cnidaria Genomes | HTML
Fundamental features that were emphasized in training ClanTox include cysteines and their spacing along the sequences. Among ... False Detection of TOLIPs Is Associated with Tandem Repeats Sequences. It has been noted that the Nematosella proteome is ... Discovery of Tandem Repeats (TRs). The presence of tandem repeats (TRs) in proteins and transcripts was determined using the ... Table 2. Tandem Repeats (TR) proteins among the top predictions from Nematostella. Each repeat was identified in two proteins ( ...http://mdpi.com/2072-6651/4/11/1367/htm
Transcription of the extended hyp-operon in Nostoc sp. strain PCC 7120.
Tandem Repeat Sequences. Transcription Initiation Site. Transcription, Genetic*. Chemical. Reg. No./Substance: 0/Bacterial ... Sequencing reactions were performed at Macrogen Inc. Computer-assisted sequence analyses were performed using BioEdit Sequence ... The secondary structures formed by the repeated conserved sequences (cs) R2, R3.1, R4 and R5 found within the intergenic ... This sequence has previously been identified in Nostoc sp. strain PCC 7120 as a LTRR (Long Tandemly Repeated Repetitive ...http://www.biomedsearch.com/nih/Transcription-extended-hyp-operon-in/18442387.html
FLT3 | Cancer Genetics Web
Tandem Repeat Sequences. *CCAAT-Enhancer-Binding Proteins. *Nuclear Proteins. *Remission Induction. *Bone Marrow ... ITD assembler: an algorithm for internal tandem duplication discovery from short-read sequencing data.. BMC Bioinformatics. ... RESULTS: The mean count of sequencing reads obtained per sample was 3.81 million and the mean sequencing depth was over 3000X. ... The combined coverage was 141 kb in sequence length. Amplicon libraries were prepared by TruSight myeloid sequencing panel ( ...http://www.cancerindex.org/geneweb/FLT3.htm
NPM1 | Cancer Genetics Web
Tandem Repeat Sequences. *Bone Marrow. Tag cloud generated 16 March, 2017 using data from PubMed, MeSH and CancerIndex ... To verify the results, we employed traditional Sanger sequencing and next-generation transcriptome sequencing. With the use of ... Using direct sequencing, we analyzed JAK2 (exons 12 and 14); CBL (exons 7, 8 and 9); NPM1 (exon 12) and the entire RUNX1 in 88 ... The performed sequencing analysis allowed the identification of two additional rare mutations (I and ZE). All of the mutations ...http://www.cancerindex.org/geneweb/NPM1.htm
Genome analysis of a major urban malaria vector mosquito, Anopheles stephensi | Genome Biology | Full Text
Interspersed repeats constitute 7.1% of the assembled genome while LTR retrotransposons alone comprise more than 49% of the Y ... and PacBio sequencing. Physical mapping assigned 62% of the genome onto chromosomes, enabling chromosome-based analysis. ... Here, we report the genome sequence and annotation of the Indian strain of the type form of An. stephensi. The 221 Mb genome ... 12. Repeat sequences. 13. Genome landscape. 14. Tandem repeat sequences. 15. Chromosome quotients of putative Y-linked ...https://genomebiology.biomedcentral.com/articles/10.1186/s13059-014-0459-2
Frontiers | De Novo Sequencing and Analysis of Lemongrass Transcriptome Provide First Insights into the Essential Oil...
Also, simple sequence repeats (SSRs) were found in the transcriptome with many linked to terpene pathway genes including the ... Also, simple sequence repeats (SSRs) were found in the transcriptome with many linked to terpene pathway genes... ... by employing Illumina sequencing. Mining of transcriptome data and subsequent phylogenetic analysis led to identification of ... by employing Illumina sequencing. Mining of transcriptome data and subsequent phylogenetic analysis led to identification of ...https://www.frontiersin.org/articles/10.3389/fpls.2016.01129/full
Anti-Human MUC1 MAb Stable Cell Line-CHO CSC-P0010 - Creative BioMart
Epithelial mucin tandem repeat sequence; H23 antigen; H23AG; KL 6; Krebs von den Lungen-6; Mucin 1 precursor; Mucin-1 subunit ... It should be stored at -20 °C. Reconstituted antibody aliquots should avoid repeated freeze-thaw cycles.. ... RNA polymerase II core promoter proximal region sequence-specific DNA binding; p53 binding; protein binding; transcription ...https://www.creativebiomart.net/description_145050_309.htm
KAKEN - Research Projects | Development of a new cell therapy by adoptive transfer of regulatory T cells to induce...
Publications] Sato Y, et al.: 'Analysis of microchimerism in peripheral blood by short tandem repeated sequences immediately ... Publications] Sato Y, et al.: 'Analysis of microchimerism in peripheral blood by short tandem repeated sequences immediately ... Publications] Sato Y, et al.: 'Analysis of microchimerism in peripheral blood by short tandem repeated sequences immediately ... Publications] Yamamoto S, et al.: 'A successful treatment of positive cross-match by treatment with postoperative repeated ...https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-14570455/
acute promyelocytic leukemia childhood 2005:2010[pubdate] *count=100 - BioMedLib™ search engine
Tandem Repeat Sequences. fms-Like Tyrosine Kinase 3 / blood. fms-Like Tyrosine Kinase 3 / genetics ... MeSH-minor] Amino Acid Sequence. Base Sequence. Chromosomes, Human, Pair 15. Chromosomes, Human, Pair 9. Cytogenetics. Humans. ... Molecular Sequence Data. Reverse Transcriptase Polymerase Chain Reaction. Translocation, Genetic. *[Email] Email this result ... We demonstrate here a striking sequence of events, which include a covert, protracted preleukemic phase characterized by a ...http://www.bmlsearch.com/?kwr=acute+promyelocytic+leukemia+childhood+2005:2010%5Bpubdate%5D&cxts=100&stmp=b0
Characterization of the SeqAΔ(41-59)-A25R mutant. (a | Open-i
Structural insights into the cooperative binding of SeqA to a tandem GATC repeat. ... b) Electrophoretic mobility shift assay of SeqAΔ(41-59)-A25R with DNAs containing two hemimethylated GATC sequences separated ... Structural insights into the cooperative binding of SeqA to a tandem GATC repeat. ... We present here the crystal structure of a dimeric mutant of SeqA [SeqADelta(41-59)-A25R] bound to tandem hemimethylated GATC ...https://openi.nlm.nih.gov/detailedresult.php?img=PMC2691817_gkp151f1&req=4
ZFIN Publication: He et al., 2014
Molecular Sequence Data. *Protein Structure, Tertiary/genetics. *Sequence Homology, Amino Acid. *Tandem Repeat Sequences ... In acute myeloid leukemia (AML), internal tandem duplication (ITD) of FLT3 at the juxtamembrane (JMD) and tyrosine kinase (TKD ...http://zfin.org/ZDB-PUB-140410-1
Thirty-thousand-year-old distant relative of giant icosahedral DNA viruses with a pandoravirus morphology | PNAS
Each cross is characteristic of a palindromic sequence whereas parallel lines indicate tandem repeated sequences. Notice that ... C) Sequence logo showing the sequence conservation of the palindromic repeats. (D) The transcription level assigned to each ... A) Alignment (dot-plot) of the Pithovirus genome nucleotide sequence against itself. Repeated sequences appear as a black ... 1). In contrast with the extremely high-repeat content of the genome, a single intervening sequence, a group I self-splicing ...http://www.pnas.org/content/111/11/4274
High-resolution mapping of repetitive DNA by in situ hybridization: molecular and chromosomal features of prominent dispersed...
Two families consisting of repeats of about 158 bp and 312 bp are organized as satellite DNAs ( Sau3A... ... Members of three prominent DNA families of Beta procumbens have been isolated as Sau3A repeats. ... Ohtsubo H, Ohtsubo E: Involvement of transposition in dispersion of tandem repeat sequences (TrsA) in rice genomes. Mol Gen ... Singer MF: Highly repeated sequences in mammalian genomes. Int Rev Cytol 76: 67-112 (1982).PubMedGoogle Scholar ...https://link.springer.com/article/10.1007%2FBF00019545
The distribution of mIMRs in the immature Gag protein [ | Open-i
Background: A DNA mirror repeat is a sequence segment delimited on the basis of its containing a center of symmetry on a single ... Background: A DNA mirror repeat is a sequence segment delimited on the basis of its containing a center of symmetry on a single ... Tandem Repeat Sequences/genetics*. *gag Gene Products, Human Immunodeficiency Virus/chemistry*. Minor ... The sequence spans in MA and CA that do not contain mIMRs are illustrated in Figure 1. These regions are both highly reactive ...https://openi.nlm.nih.gov/detailedresult.php?img=PMC2211468_1743-422X-4-113-1&req=4
Patent US5175082 - Method of characterizing genomic dna - Google Patents
Repeat or Tandem Repeat (Sequence). A polynucleotide sequence which is perfectly or imperfectly repeated in series. In general ... The consensus repeat sequence of pλg3 is also shown in FIG. 2. Each repeat sequence is aligned with the core sequence, with ... comprise tandem repeats of a particular sequence such sequence will in general be repeated at least 3 times and such repeats ... the tandem repeats may be perfect repeats or imperfect repeats or a mixture of perfect and imperfect repeats. There are ...http://www.google.com.au/patents/US5175082?hl=en&output=html_text