*  A scaling normalization method for differential expression analysis of RNA-seq data | Genome Biology | Full Text
Normalization will be crucial in many other applications of high throughput sequencing where the DNA or RNA populations being ... 13] illustrated that deepCAGE (deep sequencing cap analysis of gene expression) data follow an approximate power law ... Since a large amount of sequencing is dedicated to these liver-specific genes, there is less sequencing available for the ... Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five ...
  https://genomebiology.biomedcentral.com/articles/10.1186/gb-2010-11-3-r25
*  CRAM | Storage of high throughput DNA sequencing data using reference-based compression - OMICtools
... one opportunity to address the threat that increasing DNA sequence volumes will overcome our ability to store the sequences. ... This compression method is tunable: The storage of quality scores and unaligned sequences may be adjusted for different ... comprising file format and toolkit in which we combine highly efficient and tunable reference-based compression of sequence ... Cochrane et al., 2012) The future of DNA sequence archiving. GigaScience. PMID: 23587147 DOI: 10.1186/2047-217X-1-2 ...
  https://omictools.com/cram-tool
*  External stages « DataBase and Data Mining Group
Genome analysis. Tutor. Alessandro Fiori Description. Next Generation Sequencing (NGS) enables rapid sequencing of large ... stretches of DNA base pairs spanning entire genomes, with some instruments capable of producing hundreds of gigabases of data ... innovative approaches to analyze next generation sequencing data of human genomes. *analytical algorithms to identify genetic ...
  http://dbdmg.polito.it/wordpress/theses/external-stages/3/
*  Profile | Exeter Medical School | University of Exeter
Tom Laver is a bioinformatician specialising in analysis of DNA sequencing data. He received a BSc in Biology from the ... His work is currently focused on using analysis of DNA sequencing data to discover novel genes for hyperinsulinism. ... Sequence analysis of the CACNA1D gene in 60 further cases with HH did not identify a pathogenic mutation. Identification of an ... Sequence analysis of the CACNA1D gene in 60 further cases with HH did not identify a pathogenic mutation. Identification of an ...
  http://medicine.exeter.ac.uk/people/profile/index.php?web_id=Tom_Laver
*  Thoughts About K4D: 2007
There are a few individual genomes that have been sequenced completely, but the plans are to sequence the DNA for 10,000 people ... Development Africa analysis Appropriate Technology beliefs biodiversity biography Blogging book review brain Bush Bush ... There is a prize on offer for the first person (group) to develop technology that can sequence an individual's DNA for $1000. ... such as putting together sequences of DNA like a puzzle. It was composed of 7000 processors arranged to perform over 1000 times ...
  http://stconsultant.blogspot.com/2007/
*  Press Releases - Edico Genome
... genome data analysis solution that accelerates clinical labs' and hospitals' progression from DNA sequencing to diagnosis for ... This analysis included conversion from BCL, the file that is delivered by the sequencing instrument, to variant call format ( ... Rapid Analysis of Next-Generation Sequencing Data to be Demonstrated at the American Society of Human Genetics (ASHG) 2014 ... of the DRAGEN technology for the analysis of non-human genomes as part of the Institute's endeavours to sequence the DNA of ...
  http://edicogenome.com/news/press-releases/
*  Short read sequencing and shellfish - English
Short-read sequencing used forgenomic characterization inaquacultured shellfishSteven RobertsUniversity of WashingtonSchool of ... EpigeneticsMBD-Seq genomic DNA fragment MBD Y MBD Y enrich MBD Y sequence ... EpigeneticsMBD-Seq in silico analysis Roberts and Gavery 2012 * 38. Epigenetics - directions Are epigenetic marks independent ... Short read sequencing and shellfish * 1. Short-read sequencing used forgenomic characterization inaquacultured shellfishSteven ...
  https://www.slideshare.net/sr320/roberts-pagxx-satam
*  TCDB » Human MTPs
Computer analyses were carried out on 65 cDNA clone sequences and their corresponding end sequences to examine both nucleic ... A total of 100 kb of DNA derived from 69 individual human brain cDNA clones of 0.7-2.0 kb were sequenced by concatenated cDNA ... sequencing (CCS), whereby multiple individual DNA fragments are sequenced simultaneously in a single shotgun library. The ... In a protein similarity search, 27 clone sequences displayed significant matches, whereas only 20 of the end sequences had ...
  http://tcdb.org/hgnc_explore.php?symbol=ABCB6
*  Exon: A Web-Based Software Toolkit for DNA Sequence Analysis | SpringerLink
Recent advances in DNA sequencing methodologies have caused an exponential growth of publicly available genomic sequence data. ... web-based software toolkit DNA sequence analysis DNA compression This is a preview of subscription content, log in to check ... Pratas D., Pinho A.J., Garcia S.P. (2012) Exon: A Web-Based Software Toolkit for DNA Sequence Analysis. In: Rocha M., Luscombe ... Dix, T.I., Powell, D.R., Allison, L., Bernal, J., Jaeger, S., Stern, L.: Comparative analysis of long DNA sequences by per ...
  https://link.springer.com/chapter/10.1007/978-3-642-28839-5_25
*  DNA/PROTEIN SEQUENCE ANALYSIS PACKAGE FOR IBM VM/CMS
... Gigi Murphy MCBKANGI at nusvm.bitnet Fri May 4 16:29:30 EST 1990 * ... I am trying to set up a DNA/Protein sequence analysis software on our University IBM 3081 or IBM 3090 running VM/CMS since our ...
  http://www.bio.net/bionet/mm/bioforum/1990-May/002105.html
*  Frontiers | DNA Sequence Analysis in Clinical Medicine, Proceeding Cautiously | Molecular Biosciences
Also discussed are important recent diagnostic applications of DNA sequencing in cancer, including analysis of tumor derived ... Also discussed are important recent diagnostic applications of DNA sequencing in cancer, including analysis of tumor derived ... Pharmogenetic variants detected by DNA sequence analysis are gaining in importance and are particularly relevant to ... Applications involving analysis of cell free DNA in maternal DNA for prenatal diagnosis of specific autosomal trisomies are ...
  https://www.frontiersin.org/articles/10.3389/fmolb.2017.00024/full
*  Sequencher DNA Sequence Analysis Software from Gene Codes Corporation
DNA SEQUENCE ANALYSIS - SANGER OR NGS. Sequencher DNA Sequence Analysis Software is an indispensable tool for the benchtop ... With powerful analyses and rich visualizations, it has a unique paradigm where every analysis is an experiment that make your ... Next-Gen Sequencing (NGS), and RNA-Seq sequence data. Come see what Sequencher can do for you, Power with Simplicity. ... RNA-SEQ OR MICROARRAY DATA ANALYSIS CodeLinker is a user-friendly and powerful desktop software program for analyzing your RNA- ...
  https://www.genecodes.com/
*  Computer science graduate develops models for DNA sequence analysis : Office of Media Relations : Texas State University
His other research focus is using computers for DNA analysis to prevent disease.. More than 99 percent of the DNA in every ... Computer science graduate develops models for DNA sequence analysis ... Computer science graduate develops models for DNA sequence analysis ... Two broad areas that Huston's research focuses are developing computer models for cellular networks and performing DNA analysis ...
  http://www.txstate.edu/news/news_releases/news_archive/2007/04/EvanHuston042507.html
*  Phylogeography of the Siberian newt Salamandrella keyserlingii by mitochondrial DNA sequence analysis, Russian Journal of...
"Phylogeography of the Siberian newt Salamandrella keyserlingii by mitochondrial DNA sequence analysis, Russian Journal of ... Phylogeography of the Siberian newt Salamandrella keyserlingii by mitochondrial DNA sequence analysis. Poyarkov, N.; Kuzmin, S. ... Phylogeography of the Siberian newt Salamandrella keyserlingii by mitochondrial DNA sequence analysis. Phylogeography of the ... Mitochondrial DNA Rates and Biogeography in European Newts Genus Euproctus Caccone, A.; Milinkovitch, M.C.; Sbordoni, V.; ...
  https://www.deepdyve.com/lp/springer_journal/phylogeography-of-the-siberian-newt-salamandrella-keyserlingii-by-ENYzpggG0B
*  A highly conserved genomic region in baculoviruses: sequence analysis of an 11.3 kbp DNA fragment (46.5-55.1 m.u.) of the...
A highly conserved genomic region in baculoviruses: sequence analysis of an 11.3 kbp DNA fragment (46.5-55.1 m.u.) of the ...
  http://library.wur.nl/WebQuery/wurpubs/42335
*  "Sequence Analysis of Bacterial DNA in the Colon and Stomach of the Tyr" by Raul J. Cano, Friedrich Tiefenbrunner et al.
The sequence data were finally used for scanning data libraries containing the corresponding sequences of present-day bacteria ... tissue samples aseptically taken from the stomach and the colon of the mummy were utilized for DNA extraction, and the DNA was ... The results are discussed in light of what is known about the preservation of microbial DNA at the Iceman's site and of ... The PCR products were cloned in plasmid vectors, and the recombinant clones (amplicons) were sequenced. ...
  https://digitalcommons.calpoly.edu/bio_fac/362/
*  Faculty Collaboration Database - Mesh term Sequence Analysis, DNA
DNA Barcoding, Taxonomic. DNA Contamination. DNA Mutational Analysis. Multilocus Sequence Typing. Whole Genome Sequencing. ... Mesh term Sequence Analysis, DNA. Browse to parent terms:. Sequence Analysis. Description. A multistage process that includes ... determination of the DNA SEQUENCE, and information analysis.. Browse to child terms:. ...
  https://fcd.mcw.edu/?module=search&func=showTerm&id=68017422
*  Sequencing and Analysis of Neanderthal Genomic DNA | Science
Sequencing and Analysis of Neanderthal Genomic DNA. By James P. Noonan, Graham Coop, Sridhar Kudaravalli, Doug Smith, Johannes ... Sequencing and Analysis of Neanderthal Genomic DNA. By James P. Noonan, Graham Coop, Sridhar Kudaravalli, Doug Smith, Johannes ... Our analyses suggest that on average the Neanderthal genomic sequence we obtained and the reference human genome sequence share ... The sequences of DNA fragments from Neanderthal bones date the divergence of humans and Neanderthals to about 370,000 years ago ...
  http://science.sciencemag.org/content/314/5802/1113
*  DNA sequence analysis Archives - Biotech 365
... bioinformatics solutions for DNA sequence analysis, Cufflinks, de novo assembly, DNA sequence analysis, forensic sequencing, ... Tag Archives: DNA sequence analysis. Gene Codes - bioinformatics solutions for DNA sequence analysis. Posted on 2015-03-09. by ... Its primary product is Sequencher, a DNA Sequence Analysis Software.. Gene Codes - bioinformatics solutions for DNA sequence ... bioinformatics solutions for DNA sequence analysis, Gene Codes Corporation, GSNAP, mtDNA, next generation sequencing, next-gen ...
  http://biotech-365.com/tag/dna-sequence-analysis/
*  circlize | Circos plot generation : DNA sequence analysis - OMICtools
circlize , Circos plot generation : DNA sequence analysis Be the first to review circlize ... link DNA sequence analysis See more expand_more See less expand_less list Analytical step ...
  https://omictools.com/circlize-tool
*  Blast2GO | Gene Ontology annotation : DNA sequence analysis - OMICtools
... and data mining of novel sequence data. Blast2GO is based on the utilization of common controlled vocabulary schemas, the gene ... Metagenomic sequencing analysis link CAGE analysis link Transcription analysis link RNA-seq analysis link DNA methylation array ... link Genome annotation link De novo sequencing analysis link ... DNA sequence analysis Your feedback matters  1 discussion  ... link Gene Ontology annotation link Over-representation analysis link Transcriptome annotation See more expand_more See less ...
  https://omictools.com/blast2go-tool
*  DIGITAL SEQUENCE ANALYSIS OF DNA METHYLATION - Patent application
... by direct sequencing of individual DNA molecules, or by sequencing of clonally amplified DNA. [0094] While not limiting the ... Patent application title: DIGITAL SEQUENCE ANALYSIS OF DNA METHYLATION. Inventors: David A. Ahlquist (Rochester, MN, US) David ... Enrichment and sequence analysis of genomic regions. 2012-07-05. Virus discovery by sequencing and assembly of virus-derived ... 0068] As used herein, the term "gene" refers to a nucleic acid (e.g., DNA) sequence that comprises coding sequences necessary ...
  http://www.patentsencyclopedia.com/app/20120196756
*  bioinformatics solutions for DNA sequence analysis Archives - Biotech 365
... bioinformatics solutions for DNA sequence analysis, Cufflinks, de novo assembly, DNA sequence analysis, forensic sequencing, ... bioinformatics solutions for DNA sequence analysis. Gene Codes - bioinformatics solutions for DNA sequence analysis. Posted on ... Its primary product is Sequencher, a DNA Sequence Analysis Software.. Gene Codes - bioinformatics solutions for DNA sequence ... bioinformatics solutions for DNA sequence analysis, Gene Codes Corporation, GSNAP, mtDNA, next generation sequencing, next-gen ...
  http://biotech-365.com/tag/bioinformatics-solutions-for-dna-sequence-analysis/
*  qpgraph | Gene regulatory network inference : DNA sequence analysis - OMICtools
qpgraph , Gene regulatory network inference : DNA sequence analysis Be the first to review qpgraph ... link Genome annotation link ChIP-seq analysis link Transcription analysis link Protein interaction analysis link Gene ... A Windows-program for the analysis of experiments with hierarchical probe-sets.… ...
  https://omictools.com/qpgraph-tool
*  Sequence analysis of a 40.2 kb DNA fragment located near the l...
We have sequenced on both strands a 40,257 bp fragment locate ... Sequence analysis of a 40.2 kb DNA fragment located near the ... Sequence analysis of a 40.2 kb DNA fragment located near the left telomere of yeast chromosome X.. Authors * Vandenbol, M ... DNA sequence comparison has revealed the presence of different repeated elements characteristic of yeast chromosome ends. ... We have sequenced on both strands a 40,257 bp fragment located near the left telomere of chromosome X of Saccharomyces ...
  https://www.mysciencework.com/publication/show/sequence-analysis-40-2-kb-dna-fragment-located-near-left-telomere-yeast-chromosome-x-907b1b07