*  A Two-Layer Learning Architecture for Multi-Class Protein Folds Classification: Medicine & Healthcare Book Chapter | IGI Global
Classification of protein folds plays a very important role in the protein structure discovery process, especially when ... A Two-Layer Learning Architecture for Multi-Class Protein Folds Classification: 10.4018/978-1-4666-3604-0.ch041: ... the protein fold recognition problem can be viewed as a fold classification problem, where a query protein can be classified ... plays a critical role in protein folds recognition. This approach assumes that the number of protein folds is limited according ...
  https://www.igi-global.com/chapter/two-layer-learning-architecture-multi/76094
*  RCSB PDB - 1CIQ: COMPLEX OF TWO FRAGMENTS OF CI2, RESIDUES 1-40 AND 41-64 Macromolecule Annotations Page
... transition and native states for the association/folding of two complementary fragments of cleaved chymotrypsin inhibitor 2. ... Towards the complete structural characterization of a protein folding pathway: the structures of the denatured, ... Fold. Superfamily. Family. Domain. Species. A,B. d1ciq.1. Alpha and beta proteins (a+b) CI-2 family of serine protease ... Protein Family Annotation Pfam Database Homepage. Chains. Pfam Accession. Pfam Identifier. Pfam Description. Type. Source. ...
  http://www.rcsb.org/pdb/explore/derivedData.do?structureId=1CIQ
*  Biomolecules | Free Full-Text | The Role of Non-Native Interactions in the Folding of Knotted Proteins: Insights from...
... governing the concerted sequence of folding steps leading to the consistent formation of the same knot type in the same protein ... For this very same reason, the later discovery of several unrelated families of knotted proteins motivated researchers to look ... For various unrelated instances of knotted proteins, non-native interactions are shown to be very important for favoring the ... By considering studies employing protein models with different structural resolution (coarse-grained or atomistic) and various ...
  http://www.mdpi.com/2218-273X/4/1/1/htm
*  Demonstration of a low-energy on-pathway intermediate in a fast-folding protein by kinetics, protein engineering, and...
Kinetics, Protein Engineering, Protein Folding, Research Support; Non-U.S. Gov't, Research Support; U.S. Gov't; P.H.S. ... Demonstration of a low-energy on-pathway intermediate in a fast-folding protein by kinetics, protein engineering, and ...
  http://uu.diva-portal.org/smash/record.jsf?pid=diva2:95948
*  Protein-folding simulations sped up
... are huge molecules whose function depends on how they fold into intricate structures. To understand how these molecules work, ... Emanuel K. Peter; "Adaptive enhanced sampling with a path-variable for the simulation of protein folding and aggregation ... have been successful overall at modeling biological molecules like proteins. To determine how proteins fold, the simulation ... Many phenomena, such as certain protein folds or a drug binding to a potential target, happen over the course of a few seconds ...
  http://q-more.chemeurope.com/news/166007/protein-folding-simulations-sped-up.html
*  Protein Folding
is the mechanism by which proteins are assembled. * Somehow the string of amino acids produced by a ribosome folds into a final ... The sequence of amino acids in proteins is determined by the sequence of bases in DNA, in the genes that encode the proteins ... and a mutation that interferes with protein folding so much that the enzyme has no activity at all. ... The mutant protein will have less activity than the non-mutant protein. ...
  http://www.indiana.edu/~oso/lessons/prot/folding1.htm
*  Protein Folding Protocols | SpringerLink
Protein Folding Protocols presents protocols for studying and characterizing protein folding from the unfolded to the folded ... Protein Folding Protocols presents protocols for studying and characterizing protein folding from the unfolded to the folded ... and analyze the protein folding process. Protein Folding Protocols also provides sample approaches toward the prediction of ... A Hierarchical Protein Folding Scheme Based on the Building Block Folding Model ...
  https://link.springer.com/book/10.1385/1597451894
*  protein folding puzzlement
... jacjentait jacjentait at xtra.co.nz Thu Nov 13 07:27:14 EST 2003 *Previous message: Pleated sheet ... not be the main knowledge to protein folding ? william james tait . *Previous message: Pleated sheet bridges and loops ... More information about the Proteins mailing list. ... Next message: protein folding puzzlement * Messages sorted by: ...
  http://www.bio.net/bionet/mm/proteins/2003-November/011336.html
*  protein folding
You can fold some of the proteins all of the time. A technique for identifying folding patterns of proteins using mass ... They believe the time needed to determine the fold family of a protein can be reduced to one week and that less than 10mg of ... and to contribute to the design of protein mimetics.. C&EN, June 5, 2000 ... protein may be required to elucidate macromolecular interactions, and multiple conformational states, ...
  http://www.iucr.org/news/newsletter/volume-8/number-3/protein-folding
*  Chemical physics of protein folding | PNAS
The overall funneled nature of the folding landscape provides a first guess of how folding begins and continues: Proteins fold ... "Chemical Physics of Protein Folding," was quoted as saying, "What was called the protein folding problem 20 years ago is solved ... 1989) Mapping the transition state and pathway of protein folding by protein engineering. Nature 340(6229):122-126. ... 1992) Protein folding funnels: A kinetic approach to the sequence-structure relationship. Proc Natl Acad Sci USA 89(18):8721- ...
  http://www.pnas.org/content/109/44/17770.full
*  protein folds - Everything2.com
These can be protein classification,classified under various schemes, but it is sometimes di... ... Protein structures adopt1 many different folds - or shapes. ... protein folds. (thing). by The Alchemist Tue Aug 14 2001 at 16: ... and presumably alter the fold. Prions are the best known examples of proteins with more than one 'stable' fold (well, one ... That is, a protein structure is solved and the fold is compared to others of its basic type (the highest level of description ...
  https://everything2.com/title/protein+folds
*  Protein Folding - Team 40051 - HYN Folding - CPUs
Folding@Home is a LARGE GRID COMPUTING effort. Presently over 1,000,000 computers and over 400,000 people have contributed. ... "priyajeet" started a team to do protein folding for humanities benefit and to have this community recognized. We're team 40051 ... A bunch of folds with big points keep arriving and our average is slowly climbing. Getting to be around 4,000/day. Our total ... Folded a couple beauties overnight.. XP2800+, Abit NF7, 1GB Dual-Channel DDR333, ATI R9800PRO 128MB, TT PurePower 420W, LG DVD+ ...
  http://www.tomshardware.com/forum/62114-28-protein-folding-team-40051-folding
*  Computer gamers crack protein-folding puzzle | New Scientist
... game Foldit have beaten dedicated software and human experts in working out the shape that will be adopted by novel proteins ... Players of the online game Foldit have managed to devise ways of folding proteins that had eluded both experts and protein ... Computer gamers crack protein-folding puzzle. WHO says computer games are a waste of time? ... Foldit presents players with proteins whose amino acids they can manipulate to alter the protein's shape. The goal is to find ...
  https://www.newscientist.com/article/mg20727725-100-computer-gamers-crack-protein-folding-puzzle/
*  IJMS | Special Issue : Protein Folding 2009
Interests: protein folding; RNA folding; downhill folding; protein-protein interactions; biomolecular simulation; temperature ... protein misfolding; neuromuscular junction proteins; OB-fold proteins; protein dynamics; biophysics. ... Protein Folding in International Journal of Molecular Sciences (39 articles). *Protein Folding 2011 in International Journal of ... In recent years protein folding often seems to have become synonymous with protein structure prediction. The field of protein ...
  http://mdpi.com/journal/ijms/special_issues/protein_folding
*  Simulation of the Protein Folding Process | SpringerLink
This chapter introduces a novel protein folding simulation model which involves several stages. In particular, it distinguishes ... Specific intermediates in the folding reactions of small proteins and the mechanism of protein folding. Annu. Rev. Biochem. 51 ... Chan, H.S., Dill, K.A.: Protein folding in the landscape perspective: Chevron plots and non Arrhenius kinetics. Proteins 30, 2- ... Karplus, M., Weaver, D.L.: Protein folding dynamics: the diffusion-collision model and experimental data. Protein Sci. 3(4), ...
  https://link.springer.com/chapter/10.1007/978-3-642-28554-7_18
*  Protein Folding in the Endoplasmic Reticulum | SpringerLink
Hubbard TJP, Sander C. Heat-shock and chaperone proteins: evidence for a role in protein folding. Protein Eng (in press).Google ... Specific intermediates in the folding reactions of small proteins and the mechanism of protein folding. Annu Rev Biochem 1982; ... Polypeptide chain binding proteins: catalysts of protein folding and related processes in cells. Cell 1989; 59: 591-601.PubMed ... Experimental studies of protein folding and unfolding. Prog Biophys Mol Biol 1978; 33: 231-97.PubMedCrossRefGoogle Scholar ...
  https://link.springer.com/chapter/10.1007%2F978-1-4684-9418-1_10
*  An Alternative Approach to Protein Folding
Z. Peng and L. C. Wu, "Autonomous protein folding units," Advanced in Protein Chemistry, vol. 53, pp. 1-30, 2000. View at ... Also, many protein folding simulations such as molecular dynamics (MD) require large amounts of CPU time for protein structure ... Owing to the speed of the physical model, the protein folding dynamic can be traced. Here, the protein energy is seen to ... 5] and Moore and Pearson [6]). Here, these principles are applied to the protein folding dynamic and the protein structure ...
  https://www.hindawi.com/journals/bmri/2013/583045/
*  An Alternative Approach to Protein Folding
Yeona Kang and Charles M. Fortmann, "An Alternative Approach to Protein Folding," BioMed Research International, vol. 2013, ... An Alternative Approach to Protein Folding. Yeona Kang and Charles M. Fortmann ...
  https://www.hindawi.com/journals/bmri/2013/583045/cta/
*  Protein folding and Mr estimates
... Peeter Toomik peeter.toomik at ut.ee Fri Jan 23 05:07:00 EST 1998 *Previous message: Protein ... There is nothing new, and there is nothing to do with protein folding because everything must be completely unfolded after ... We are currently working with a cysteine-rich protein, and it does polymerise when treated with iodoacetamide. We have some ... and amino acid composition but with different folding conformations. , Niether are glycosylated. , BUT the two have apparent ...
  http://www.bio.net/bionet/mm/proteins/1998-January/006177.html
*  Supercomputer Sets Protein-Folding Record - Slashdot
A specially designed supercomputer named Anton has simulated changes in a protein's three-dimensional structure over a period ... of a millisecond - a time-scale more than a hundred-fold greater than the previous record. ... The simulations reveal... ... The simulations revealed how the proteins changed as they folded, unfolded and folded again. 'The agreement with experimental ... Supercomputer Sets Protein-Folding Record 63 Posted by Soulskill on Sunday October 17, 2010 @05:11AM. from the here's-your- ...
  https://science.slashdot.org/story/10/10/17/0550208/supercomputer-sets-protein-folding-record?sdsrc=nextbtmprev
*  IUCr) Membrane Protein Folding (GRC)
The International Union of Crystallography is a non-profit scientific union serving the world-wide interests of crystallographers and other scientists employing crystallographic methods ...
  http://www.iucr.org/calendar/events/types/conferences/membrane-protein-folding-grc
*  differential evolution and protein folding - PubMed - NCBI
... "protein folding"[MeSH Terms] OR ("protein"[All Fields] AND "folding"[All Fields]) OR "protein folding"[All Fields]). Search. ... Emergent protein folding modeled with evolved neural cellular automata using the 3D HP model. Santos J et al. J Comput Biol. ( ... Differential evolution for protein folding optimization based on a three-dimensional AB off-lattice model. Bošković B et al. J ... Evolution and design of protein structure by folding nucleus symmetric expansion. Longo LM et al. Structure. (2014) ...
  https://www.ncbi.nlm.nih.gov/pubmed/?term=differential+evolution+and+protein+folding
*  Oxidative Protein-Folding Systems in Plant Cells
... exhibit the abnormal accumulation of storage proteins and unfolded protein response-related induction of the protein-folding ... a novel and ubiquitous protein with an essential role in oxidative protein folding in the endoplasmic reticulum," Molecular ... 3 likely plays an important role in protein folding or in enzyme regulation of proteins associated with starch metabolism in ... "Protein disulfide isomerase-2 of Arabidopsis mediates protein folding and localizes to both the secretory pathway and nucleus, ...
  https://www.hindawi.com/journals/ijcb/2013/585431/
*  Protein folding hits a speed limit
To study protein folding at the speed limit, Gruebele and graduate student Wei Yuan Yang took a small protein and, by replacing ... "Longer molecules have to move around more to fold, and therefore have slower speed limits." By modifying their protein to fold ... "Some of our proteins were folding as fast as they possibly could -- in only one or two microseconds," said Martin Gruebele, an ... "Because a protein can follow more than one pathway to its native state, a variety of folding times will result," Gruebele said ...
  http://www.innovations-report.com/html/reports/life-sciences/report-18295.html
*  simulation of protein folding process (paper)
... raffaele at caio.irmkant.rm.cnr.it raffaele at caio.irmkant.rm.cnr.it Tue May 2 ... We discuss some general implications of an Artificial Life approach to protein folding which makes an attempt at simulating the ... We have been able to obtain appropriate matrices of folding potentials, i.e. 'forces' able to drive the folding process to ... tertiary structure of unknown proteins by modelling the folding process without using potentials extracted from known protein ...
  http://www.bio.net/bionet/mm/comp-bio/1995-May/000620.html