Optical restriction mapping. Medical search. Web

Ordered restriction maps of Saccharomyces cerevisiae chromosomes constructed by optical mapping. Science 262, 110-114 (1993). ... Nature 475, 348-352 (2011). This paper describes the first non-optical sequencing technology using a massively parallel semi- ... Rapid genome mapping in nanochannel arrays for highly complete and accurate de novo sequence assembly of the complex Aegilops ... Genome mapping on nanochannel arrays for structural variation analysis and sequence assembly. Nat. Biotechnol. 30, 771-776 ( ...

https://www.nature.com/articles/nrg.2016.49?error=cookies_not_supported&code=f96f3032-d208-42ef-85c0-6b06184a609c

... high-resolution restriction maps from single, stained molecules of DNA, called "optical maps". By mapping the location of ... This produces an optical map of single molecules. Individual optical maps are combined to produce a consensus, genomic optical ... Initially, the optical mapping system has been used to construct whole-genome restriction maps of bacteria, parasites, and ... "Ordered Restriction Maps of Saccharomyces Cerevisiae Chromosomes Constructed by Optical Mapping." Science 262.5130 (1993): 110- ...

https://en.wikipedia.org/wiki/Optical_mapping

High-resolution restriction maps of bacterial artificial chromosomes constructed by optical mapping. W Cai, J Jing, B Irvin, L ... A shotgun optical map of the entire Plasmodium falciparum genome. Z Lai, J Jing, C Aston, V Clarke, J Apodaca, ET Dimalanta, DJ ... Automated high resolution optical mapping using arrayed, fluid-fixed DNA molecules. J Jing, J Reed, J Huang, X Hu, V Clarke, J ... Whole-genome shotgun optical mapping of Deinococcus radiodurans. J Lin, R Qi, C Aston, J Jing, TS Anantharaman, B Mishra, O ...

https://scholar.google.es/citations?user=kXVBr20AAAAJ&hl=en&oe=ASCII

Genome-wide optical maps are ordered high-resolution restriction maps that give the position of occurrence of restriction cut ... Kermit: linkage map guided long read assembly With long reads getting even longer and cheaper, large scale sequencing projects ... sites corresponding to one or more restriction enzymes. These genome-wide optical m... ...

https://www.biomedcentral.com/collections/wabi2018

Here, we review several algorithms and methods for building consensus optical maps and aligning restriction patterns to a ... Optical mapping and newer genome mapping technologies based on nicking enzymes provide low resolution but long-range genomic ... The optical mapping technique has been successfully used for assessing the quality of genome assemblies and for detecting large ... reference map, as well as methods for using optical maps with sequence assemblies.. ...

https://cbcb.umd.edu/publications/computational-methods-optical-mapping

Optical mapping. Optical maps [38] for each genome using the restriction enzymes AflII and NheI (Y. aldovae and Y. kristensenii ... Alignment of contigs to the optical maps [39] suggested that the optical maps consistently overestimated sizes (2 to 10% on ... Nagarajan N, Read TD, Pop M: Scaffolding and validation of bacterial genome assemblies using optical restriction maps. ... We also derived an independent estimate for the genome size from the whole-genome optical restriction mapping of the species [ ...

https://genomebiology.biomedcentral.com/articles/10.1186/gb-2010-11-1-r1

... a whole-genome restriction map, White said. "We make a fingerprint of the DNA, of the whole genome, that we can then put into ... "so that the contigs can be mapped back to the complete ordered optical map scaffold of DNA, giving researchers the ability to ... The Optical Mapping Technology was licensed from New York University and the University of Wisconsin, and OpGen has been ... For strain typing, an optical map of the isolate of interest can be generated in about 24 hours, compared to the days or weeks ...

https://www.genomeweb.com/sequencing/opgen-prepping-optical-mapping-system-analysis-human-other-larger-genomes

S. Saha and S. Rajasekaran, Efficient and scalable scaffolding using optical restriction maps, BMC Genomics 2014, 15(Suppl 5): ... H. ElGindy and S. Rajasekaran, Sorting and Selection Algorithms on a Linear Array with Optical Bus System, Parallel Processing ... M. Song and S. Rajasekaran, A Transaction Mapping Algorithm for Frequent Itemsets Mining, IEEE Transactions on Knowledge and ... S. Rajasekaran and S. Sahni, Sorting, Selection, and Routing on the Array with Reconfigurable Optical Buses, IEEE Transactions ...

https://raj.cse.uconn.edu/journal_article/

We suggest that the areal border imposes a strong restriction on the pattern formation of orientation preference maps in the ... In this study we examined the arrangement of orientation pinwheel centers in the cat visual cortex by optical imaging of ... We suggest that the areal border imposes a strong restriction on the pattern formation of orientation preference maps in the ... We suggest that the areal border imposes a strong restriction on the pattern formation of orientation preference maps in the ...

https://kyushu-u.elsevierpure.com/en/publications/arrangement-of-orientation-pinwheel-centers-around-area-1718-tran

has restriction * bronze Date in CU Experts * February 25, 2021 5:10 AM ... Space Telescope and Optical Reverberation Mapping Project. IX. Velocity-Delay Maps for Broad Emission Lines in NGC 5548 Journal ...

https://vivo.colorado.edu/display/pubid_306822

Optical genome mapping (OGM), which allows analysis of ultra-high molecular weight (UHMW) DNA molecules, represents a response ... to the restriction created by short-read next-generation-sequencing, even in cases where the causative variant is a neutral ... Case Report: Decrypting an interchromosomal insertion associated with Marfans syndrome: how optical genome mapping emphasizes ...

https://www.researchgate.net/institution/University_of_Catania

Ordered restriction endonuclease maps of yeast artificial chromosomes created by optical mapping on surfaces. Proc Natl Acad ... High-resolution physical mapping by combined Alu-hybridization/PCR screening: construction of a yeast artificial chromosome map ... 1993) Isolation and FISH mapping of 80 cosmid clones on the short arm of human chromosome 3. Genomics 16: 90-6 ...

https://www.genome.rcast.u-tokyo.ac.jp/publications/publications_-1999/

In one case, water restrictions were lifted from a group of users based on Landsat data used with the states METRIC model (a ... The Nations largest wholesaler of water, the U.S. Bureau of Reclamation, uses Landsat data for mapping and monitoring on the ... At the state level, Landsats unique combination of thermal and optical data makes for an efficient tool for fair enforcement ... In Australia, Landsat imagery, in conjunction with images from NASAs MODIS and commercial satellites, has been used to map ...

https://landsat.gsfc.nasa.gov/article/landsat-and-water-using-space-to-advance-resource-solutions/

Automated Optical Tweezers Manipulation to Transfer Mitochondria from Fetal to Adult MSCs to Improve Antiaging Gene Expressions ... Neural Degeneration in Normal-Aging Human Cochleas: Machine-Learning Counts and 3D Mapping in Archival Sections November 14, ... Calorie restriction reduces biomarkers of cellular senescence in humans November 14, 2023 ...

https://www.sens.org/article-tag/mtdna/

Inventory of potentially misassembled sequences identified by the optical map data. (XLSX) ... Map of the tropical Asia Pacific region showing the sampling locations for Asian seabass across its native range. India-Western ... Evaluation of the Asian seabass scaffolded genome assembly (v2) by mapping Illumina PE Genome reads to assembly for linear ... Condition-Specific Mapping of Operons (COSMO) using dynamic and static genome data ...

https://www.researchgate.net/profile/Peter-Van-Heusden

Optical Restriction Mapping. Mapeo de Restricción Optica. Matrizes de Pontuação de Posição Específica. Position-Specific ...

https://decs2011.bvsalud.org/P/new_2010.htm