Gene expression profiling in patients with chronic obstructive pulmonary disease and lung cancer
Oligonucleotide Array Sequence Analysis * Predictive Value of Tests * Probability * Pulmonary Disease, Chronic Obstructive / ... mRNA from the specimens was profiled using Agilents Functional ID v2.0 array (Agilent, Santa Clara, CA) containing 23,720 ... sequences. Measurements and main results: The gene expression pattern was influenced by the percentage of the sample made up of ...
Meta-analysis of multiple microarray datasets reveals a common gene signature of metastasis in solid tumors
We have modified a previously published meta-analysis method and identified a common metastatic signature by comparing primary ... Oligonucleotide Array Sequence Analysis * Vascular Endothelial Growth Factor A / genetics Substances * Vascular Endothelial ... Meta-analysis of multiple microarray datasets reveals a common gene signature of metastasis in solid tumors BMC Med Genomics. ... Pathway analysis of the significant genes showed that the genes were involved in known metastasis-associated pathways, such as ...
The EPA National Library Catalog | EPA National Library Network | US EPA
AKR1B10 | Cancer Genetics Web
Oligonucleotide Array Sequence Analysis. *Wound Healing. *Lung Cancer. *Sulfates. *Gene Expression. *Tumor Microenvironment ... Clinical array comparative genome hybridization analysis revealed a 16p13.3 deletion that could not be linked to the patient ... Clinical testing included metaphase karyotyping, array comparative genomic hybridization, direct sequencing and multiplex ... including mutation screening by direct sequence analysis and multiplex ligation-dependent probe amplification. Whole ...
S100A10 | Cancer Genetics Web
Oligonucleotide Array Sequence Analysis. *Young Adult. *Skin Cancer. *Immunohistochemistry. *Oncogene Fusion Proteins ... was developed by Cox regression analysis and validated by bootstrapping. The regression analysis identified tumor stage and ... Literature Analysis. Mouse over the terms for more detail; many indicate links which you can click for dedicated pages about ... RNA-sequencing was performed on three tenosynovial giant cell tumors (TSGCT) in an attempt to elicit more information on the ...
Hao Li, Ph.D. | Harvard Catalyst Profiles | Harvard Catalyst
DNA microarray - Wikipedia
"Light-generated oligonucleotide arrays for rapid DNA sequence analysis". PNAS. 91 (11): 5022-5026. Bibcode:1994PNAS...91.5022P ... Oligonucleotide arrays are produced by printing short oligonucleotide sequences designed to represent a single gene or family ... In oligonucleotide microarrays, the probes are short sequences designed to match parts of the sequence of known or predicted ... Although oligonucleotide probes are often used in "spotted" microarrays, the term "oligonucleotide array" most often refers to ...
Integrated genetic and epigenetic analysis of childhood acute lymphoblastic leukemia | Lund University Publications
Oligonucleotide Array Sequence Analysis, Precursor Cell Lymphoblastic Leukemia-Lymphoma, Signal Transduction, Transcriptome. in ... Oligonucleotide Array Sequence Analysis; Precursor Cell Lymphoblastic Leukemia-Lymphoma; Signal Transduction; Transcriptome}}, ... Integrated genetic and epigenetic analysis of childhood acute lymphoblastic leukemia. *Mark. Figueroa, Maria E ; Chen, Shann- ... We analyzed 137 B-lineage and 30 T-lineage childhood ALL cases using microarray analysis of DNA copy number alterations and ...
Biblio | College of Agricultural Sciences
Filters: Keyword is Oligonucleotide Array Sequence Analysis and Author is Tanguay, Robert L [Clear All Filters] ... K. S. Saili, Tilton, S. C., Waters, K. M., and Tanguay, R. L., "Global gene expression analysis reveals pathway differences ... R. L. Tanguay and Reimers, M. J., "Analysis of ethanol developmental toxicity in zebrafish.", Methods Mol Biol, vol. 447, pp. ... an integrated software environment for systems biology with microRNA and cross-species analysis tools.", BMC Bioinformatics, ...
Biblio | College of Agricultural Sciences
The cancer stem cell subtype determines immune infiltration of glioblastoma - University of Regensburg Publication Server
New paradigms in cardiovascular medicine: emerging technologies and practices: perioperative genomics.
Elevated hepatocyte levels of the Forkhead box A2 (HNF-3beta) transcription factor cause postnatal steatosis and mitochondrial...
Oligonucleotide Array Sequence Analysis. *Nuclear Proteins. *Mitochondria, Liver. *Mice, Transgenic. *Mice. *Lipid Metabolism ... Furthermore, transmission electron microscopy analysis of postnatal TG liver revealed extensive mitochondrial membrane damage, ...
Gene Selection via a New Hybrid Ant Colony Optimization Algorithm for Cancer Classification in High-Dimensional Data
... which is a common task in most microarray data analysis studies. This reduction has an essential role in enhancing the accuracy ... The recent advance in the microarray data analysis makes it easy to simultaneously measure the expression levels of several ... "Light-generated oligonucleotide arrays for rapid DNA sequence analysis," Proceedings of the National Academy of Sciences, vol. ... Complexity Analysis of MWIS-ACO-LS. Suppose that N is the number of the original genes and M is the number of samples. Our ...
Vitamins D3 and D2 have marked but different global effects on gene expression in a rat oligodendrocyte precursor cell line -...
Oligonucleotide Array Sequence Analysis 8% * Uncertainty 7% * Cluster Analysis 7% * Software 5% ...
Medical Science Monitor | Personalized- and One- Medicine: Bioinformatics Foundation in Health and its Economic Feasibility -...
However, given the mass of data emerging from this analysis, and commonalities they reveal between various phenomena/disorders ... Needless to say this same analysis can be performed on various types of cancers, including samples stored for many years under ... Oligonucleotide Array Sequence Analysis - methods, Polymorphism, Genetic, Risk Factors, Sequence Analysis, DNA, Sequence ... 20 Sep 2023 : Database Analysis Comparative Finite Element Analysis of Endocrowns and Traditional Restorations for ...
Biblio | College of Agricultural Sciences
Deakin University / All Locations
See Oligonucleotide Array Sequence Analysis Hybridization of a nucleic acid sample to a very large set of OLIGONUCLEOTIDE ... See Oligonucleotide Array Sequence Analysis Hybridization of a nucleic acid sample to a very large set of OLIGONUCLEOTIDE ... Gene Analyses, Candidate -- See Genetic Association Studies The analysis of a sequence such as a region of a chromosome, a ... Gene Analysis, Candidate -- See Genetic Association Studies The analysis of a sequence such as a region of a chromosome, a ...
Kent Vrana - Research output - Penn State
Experimental design for hybridization array analysis of gene expression. Freeman, W. M. & Vrana, K., Jan 1 2001, DNA Arrays: ... cDNA Arrays in Alcohol-Related Pathology: Methods and Approaches. Gooch, R. S., Worst, T. J., Freeman, W. M. & Vrana, K. E., ... Bioinformatic and computational approaches for analysis of genomics data in neurotoxicology research. Gohlke, J. M., Freeman, W ...
Profiling gene expression dynamics underpinning conventional testing approaches to better inform pre-clinical evaluation of an...
A tiling resolution DNA microarray with complete coverage of the human genome - Fingerprint - NYU Scholars
Use of microarray technologies in toxicology research<...
Oligonucleotide Array Sequence Analysis Medicine & Life Sciences 48% View full fingerprint Cite this. * APA ... This review addresses: (1) the potential uses of array data; (2) the various array platforms, highlighting both their ... This review addresses: (1) the potential uses of array data; (2) the various array platforms, highlighting both their ... This review addresses: (1) the potential uses of array data; (2) the various array platforms, highlighting both their ...
Genome-wide expression analysis reveals dysregulation of myelination-related genes in chronic schizophrenia<...
Oligonucleotide Array Sequence Analysis Medicine & Life Sciences 31% * Microarray Analysis Medicine & Life Sciences 31% ... Genome-wide expression analysis reveals dysregulation of myelination-related genes in chronic schizophrenia. In: Proceedings of ... Genome-wide expression analysis reveals dysregulation of myelination-related genes in chronic schizophrenia. Proceedings of the ... Genome-wide expression analysis reveals dysregulation of myelination-related genes in chronic schizophrenia. / Hakak, Yaron; ...
Combined analysis of microbial metagenomic and metatranscriptomic sequencing data to assess in situ physiological conditions in...
Transcriptome analysis of Escherichia coli using high-density oligonucleotide probe arrays journal, September 2002 * Tjaden, B. ... The expression and sequence analyses indicate that the two poplar genes diverged, at least partially, in function. PtPHOR1_1 is ... Title: Combined analysis of microbial metagenomic and metatranscriptomic sequencing data to assess in situ physiological ... Cutadapt removes adapter sequences from high-throughput sequencing reads journal, May 2011 * Martin, Marcel ...
Malignant Rhabdoid Tumor: Practice Essentials, Background, Pathophysiology
... coding sequence analysis, high-density single nucleotide polymorphism-based oligonucleotide arrays, and multiplex ligation- ... Genomic analysis using high-density single nucleotide polymorphism-based oligonucleotide arrays and multiplex ligation- ... with high-density single nucleotide polymorphism-based oligonucleotide arrays and multiplex ligation-dependent probe ... 11] This analysis showed evidence for epigenetic reprogramming of HOX genes with loss of H3K27me3 marks, as well as ...
Cellular gene expression altered by human cytomegalovirus: Global monitoring with oligonucleotide arrays<...
Oligonucleotide Array Sequence Analysis Medicine & Life Sciences 100% * Cytomegalovirus Medicine & Life Sciences 96% ... Cellular gene expression altered by human cytomegalovirus : Global monitoring with oligonucleotide arrays. In: Proceedings of ... Cellular gene expression altered by human cytomegalovirus: Global monitoring with oligonucleotide arrays. / Zhu, Hua; Cong, ... title = "Cellular gene expression altered by human cytomegalovirus: Global monitoring with oligonucleotide arrays", ...
Effects of NF-κB oligonucleotide "decoys" on gene expression in P7 rat hippocampus after hypoxia/ischemia<...
Oligonucleotide Array Sequence Analysis Medicine & Life Sciences 59% * Gene Expression Medicine & Life Sciences 57% ... We applied two different decoy oligonucleotides that contained the NF-κB binding consensus sequences present in the ... We applied two different decoy oligonucleotides that contained the NF-κB binding consensus sequences present in the ... We applied two different decoy oligonucleotides that contained the NF-κB binding consensus sequences present in the ...
Molecular detection of drug-resistant mycobacterium tuberculosis with a scanning-frame oligonucleotide microarray<...
Oligonucleotide Array Sequence Analysis Medicine & Life Sciences 85% * Mycobacterium tuberculosis Medicine & Life Sciences 80% ... In this chapter, we describe the utility of a microarray-based approach exploiting short overlapping oligonucleotides (sliding- ... In this chapter, we describe the utility of a microarray-based approach exploiting short overlapping oligonucleotides (sliding- ... In this chapter, we describe the utility of a microarray-based approach exploiting short overlapping oligonucleotides (sliding- ...
Mariana Esmeraldo Kirst - Citation Index - NCSU Libraries
Molecular Sequence Data; Oligonucleotide Array Sequence Analysis; Quantitative Trait Loci ... Oligonucleotide Array Sequence Analysis; Phylogeny; Quantitative Trait Loci; RNA, Messenger / metabolism ... MeSH headings : Amino Acid Sequence; Consensus Sequence; Endoplasmic Reticulum / genetics; Endoplasmic Reticulum / physiology; ... Sequence Alignment; Sequence Homology, Amino Acid; Zea mays / genetics ...
Chondrosarcoma | Cancer Genetics Web
Oligonucleotide Array Sequence Analysis. *MMP2. *Spinal Neoplasms. *Childhood Cancer. *DNA Mutational Analysis ... We present analysis, both array and quantitative PCR, that shows consistently and substantially increased expression of two ... Genomic analysis of single nucleotide polymorphisms showed aberrant genomic contents. The DNA sequencing revealed the absence ... were collected for IDH1/2 mutation analysis either using the Qiagen IDH1/2 RGQ PCR Kit or using whole-exome sequencing. IDH1/2 ...