Welcome to CDC stacks | Identification of Melioidosis Outbreak by Multilocus Variable Number Tandem Repeat Analysis - 17415 |...
Minisatellite Repeats MLST MLVA Molecular Sequence Data Outbreak Phylogenetic Analysis Research Sequence Analysis, DNA VNTR ... We developed a simplified 4-locus multilocus variable number tandem repeat analysis (MLVA-4) for rapid typing and compared ... Multilocus variable number tandem repeat analysis of a Burkholderia mallei strain isolated from a diseased dromedary in Bahrain ...https://stacks.cdc.gov/view/cdc/17415
Identification and topology of variant sequences within individual repeat domains of the human epithelial tumor mucin MUC1. -...
... peripheral regions of the variable number of tandem repeats domain. Minisatellite variant repeat analyses were performed with ... were identified by sequencing of polymerase chain reaction products and studied by minisatellite variant repeat analysis for ... The largely constant topology of variant repeats is interpreted by the assumption that the variable number of tandem repeats ... The repeat variant 1 replacing the established tumor target motif DTR with ESR was found in all individuals and appears ...https://www.semanticscholar.org/paper/Identification-and-topology-of-variant-sequences-w-Engelmann-Baldus/2d5c4519062cd38b6db659a0c005754337761395
Phylogenetic Analysis of Enterohemorrhagic Escherichia coli O157, Germany, 1987-2008 - Volume 16, Number 4-April 2010 -...
Multilocus variable number tandem repeat analysis (MLVA) is a subtyping technique for characterizing human pathogenic bacteria ... Repeat regions are amplified by using PCRs, and resulting fragments are sized to determine the number of repeats. The ... Supply P, Warren RM, Banuls A, Lesjean S, Van Der Spuy GD, Lewis L, Linkage disequilibrium between minisatellite loci supports ... Partial repeats were rounded to the closest repeat number in accordance with the current Centers for Disease Control and ...https://wwwnc.cdc.gov/eid/article/16/4/09-1361_article
Minisatellite repeats - Biology-Online Dictionary
Loci number in the thousands but each locus shows a distinctive repeat unit. Minisatellite repeats are often called variable ... minisatellite repeats tandem arrays of moderately repetitive DNA sequences found dispersed throughout the genome but clustered ... Retrieved from "https://www.biology-online.org/dictionary/index.php?title=Minisatellite_repeats&oldid=15880" ...https://www.biology-online.org/dictionary/Minisatellite_repeats
Minisatellite or Variable Number Tandem Repeat(VNTR) are used in
... -----. Options :. *gene therapy ...http://www.studyalways.com/forum/9030-minisatellite-variable-number-tandem-repeatvntr.aspx
MS205 minisatellite diversity in Basques: evidence for a pre-Neolithic component.
In an attempt to add new insights into this hypothesis, MS205 minisatellite dive ... MS205 minisatellite diversity has been investigated by Minisatellite Variant Repeat (MVR) analysis in a sample of ,100 ...http://www.biomedsearch.com/nih/MS205-minisatellite-diversity-in-Basques/9872983.html
A mitochondrial DNA minisatellite reveals the postglacial history of jack pine (Pinus banksiana), a broad-range North American...
Minisatellite Repeats / genetics*. Models, Genetic. Molecular Sequence Data. North America. Phylogeny*. Pinus / genetics*. ... which corresponded to different repeat numbers of the 32-nucleotide minisatellite-like motif. Several haplotypes were rare with ... A mitochondrial DNA minisatellite reveals the postglacial history of jack pine (Pinus banksiana), a broad-range North American ... range-wide genetic variation was assessed using a new and highly variable minisatellite-like marker of the mitochondrial genome ...http://www.biomedsearch.com/nih/mitochondrial-DNA-minisatellite-reveals-postglacial/16156818.html
PPT - More Molecular Genetic Technologies (Chapters 8, 9, 10) Polymerase Chain Reaction (PCR) Standard PCR method Real-time qu...
Minisatellites (VNTRs = variable number tandem repeats). Repeated units of 5 to several 10 bp ... Repeat the cycle of denaturing, annealing, and extension 20-45 times to produce 1 million (220) to 35 trillion copies (245) of ...https://www.slideserve.com/Ava/polymerase-chain-reaction-pcrstandard-pcr-methodreal-time-quantitative-pcrdna-sequencing-manual-dideoxy-automated-fluore
Comparison of multilocus sequence typing (MLST) and 4-l | Open-i
... and 4-locus multilocus variable number tandem repeat analysis (MLVA-4) dendrograms for 65 Burkholderia pseudomal ... Identification of melioidosis outbreak by multilocus variable number tandem repeat analysis. Currie BJ, Haslem A, Pearson T, ... Identification of melioidosis outbreak by multilocus variable number tandem repeat analysis. Currie BJ, Haslem A, Pearson T, ... Figure 1: Comparison of multilocus sequence typing (MLST) and 4-locus multilocus variable number tandem repeat analysis (MLVA-4 ...https://openi.nlm.nih.gov/detailedresult.php?img=PMC2657638_08-1036-F1&req=4
Neurobehavioral performance at baseline and during chro | Open-i
Background: The variable number tandem repeat (VNTR) polymorphism 5-repeat allele of the circadian gene PERIOD3 (PER3(5/5)) has ... Background: The variable number tandem repeat (VNTR) polymorphism 5-repeat allele of the circadian gene PERIOD3 (PER3(5/5)) has ... relative to the 4-repeat allele (PER3(4/4)). PER3(5/5) has also been related to higher sleep homeostasis, which is thought to ... relative to the 4-repeat allele (PER3(4/4)). PER3(5/5) has also been related to higher sleep homeostasis, which is thought to ...https://openi.nlm.nih.gov/detailedresult.php?img=PMC2689932_pone.0005874.g001&req=4
ENSTA ParisTech - Isolation of human minisatellite loci detected by synthetic tandem repeat probes: direct comparison with...
... for example 10 out of 14 bases in a limited region of each repeat, is sufficient for the positive detection of tandem repeats ... Four new polymorphic loci were detected by one or more of the STR probes but not by any of the naturally occurring repeats. ... The STR probes vary in the efficiency of detection of polymorphic minisatellite loci; among the more efficient probes, there is ... present the results of screening an ordered array Charomid library for hypervariable human loci using synthetic tandem repeat ( ...https://hal-ensta.archives-ouvertes.fr/hal-01160688
Criminals Can neither Fool DNA Fingerprinting nor Escape from It | HubPages
Allele short tandem repeats (STRs) are used.. DNA profile starts with short tandem repeats (STRs) consisting of minisatellites ... Nucleotides make up a gene; they make up the minisatellite repeats that are used in DNA fingerprinting analysis (Cummings, M. ... Each minisatellite is composed of DNA sequences of 2 to 9 pairs of bases like GGTTG, GGTTG, GGTTG, GGTTG, GGTTG which is a case ... In a minisatellite, the amino acid and the sequence of amino acids is important; the sequence is arranged by nature or by ...https://hubpages.com/education/No-Escape-From-DNA-Fingerprinting
Frequency of minisatellite repeat number changes at the MS205 locus in human sperm before and after cancer chemotherapy. ... A tetranucleotide repeat mouse minisatellite displaying substantial somatic instability during early preimplantation ... Induction of minisatellite mutations in the mouse germline by low-dose chronic exposure to γ-radiation and fission neutrons. ... Expanded simple tandem repeat loci. Introduction. In recent decades, improvements in cancer treatment have produced dramatic ...http://cancerres.aacrjournals.org/content/68/10/3630
Chromosomal fragile site - Wikipedia
... while the nonfolate-sensitive group contains many AT-rich minisatellite repeats. The CGG and AT-rich repeats characteristic of ... "Human chromosomal fragile site FRA16B is an amplified AT-rich minisatellite repeat". Cell. 88 (3): 367-74. doi:10.1016/S0092- ... Rare fragile sites are found in less than 5% of the population, and are often composed of two- or three-nucleotide repeats. ... DNA polymerase has been shown to pause at CTG and CGG triplet repeat sequences, which can result in continual expansion via ...https://en.wikipedia.org/wiki/Chromosomal_fragile_site
Biochemistry DNA Flashcards - Cram.com
Minisatellite - a tandem repeat of 20-120 bp of DNA. Not transcribed into RNA. Can have variation in the minisatellite repeats ... Alpha-satellite: tandem repeats of 171 bp for several million bp, found near centromere.. Minisatellite: 20-120 bp, in tandem ... Microsatellite: smaller repeat units of 2-5 bp in tandem. In the population, there is variation in the microsatellite repeats ... 6. Repeated with each ddATP, ddCTP, etc.. 7. Varying length fragments are created, seperated by electrophoresis, and each is ...http://www.cram.com/flashcards/biochemistry-dna-725525
Species-wide distribution of highly polymorphic minisatellite markers suggests past and present genetic exchanges among house...
... by minisatellite variant repeat mapping PCR to produce maps of intermingled patterns of variant repeats along the repeat array ... Given the high mutation rate of mouse minisatellite loci, this picture cannot be interpreted only with simple splitting events ... Given the high haplotypic diversity detected (mean He= 0.962), these minisatellite trees proved to be highly informative for ... Four hypervariable minisatellite loci were scored on a panel of 116 individuals of various geographical origins representing a ...https://genomebiology.biomedcentral.com/articles/10.1186/gb-2007-8-5-r80
Differential control of Zap1-regulated genes in response to zinc deficiency in Saccharomyces cerevisiae | BMC Genomics | Full...
RAD27 encodes a nuclease that is required for the stability of minisatellite repeats in genomic DNA [35, 36]. The recent ... Maleki S, Cederberg H, Rannug U: The human minisatellites MS1, MS32, MS205 and CEB1 integrated into the yeast genome exhibit ... Lopes J, Debrauwere H, Buard J, Nicolas A: Instability of the human minisatellite CEB1 in rad27Delta and dna2-1 replication- ... Kelly MK, Jauert PA, Jensen LE, Chan CL, Truong CS, Kirkpatrick DT: Zinc regulates the stability of repetitive minisatellite ...https://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-9-370
Genetic Recombination and Cryptosporidium hominis Virulent Subtype IbA10G2 - Volume 19, Number 10-October 2013 - Emerging...
We searched for additional microsatellite and minisatellite markers in the chromosome 6 genome by using Tandem Repeats Finder ... including variations in copy numbers of microsatellite or minisatellite repeat and single nucleotide substitutions (SNPs) and ... Primer sequences of 24 additional microsatellite and minisatellite loci used in the multilocus typing analysis of ... Conversion of microsatellite and minisatellite sequences to allelic data was performed by using the Excel Microsatellite Tool ...https://wwwnc.cdc.gov/eid/article/19/10/12-1361_article
Minisatellite - Wikipedia
... and microsatellites are often referred to as short tandem repeats (STRs) or simple sequence repeats (SSRs). Minisatellites ... Minisatellite variant repeat mapping by PCR (MVR-PCR) has been extensively used to chart the interspersion patterns of variant ... These variant repeats are tandemly intermingled. Some minisatellites contain a central sequence (or "core unit") of nucleobases ... Microsatellite Tandem repeat Telomere Minisatellite at the US National Library of Medicine Medical Subject Headings (MeSH) ...https://en.wikipedia.org/wiki/Minisatellite
ABO exon and intron analysis in individuals with the AweakB phenotype reveals a novel O1v-A2 hybrid allele that causes four...
Irshaid NM, Chester MA, Olsson ML: Allele-related variation in minisatellite repeats involved in the transcription of the blood ... enhancer mini-satellite PCR analysis indicated that four of these samples were homozygous for four 43 bp-repeats in the CBF-NF/ ... Transcription of human ABO histo-blood group genes is dependent upon binding of transcription factor CBF/NF-Y to minisatellite ... the individual originating from the Dominican Republic was heterozygous for one and four repeats, thus deviating from the rule ...https://bmcgenet.biomedcentral.com/articles/10.1186/1471-2156-4-17
trypanosoma brucei rhodesiense
Evidence for multiple origins of human infectivity in Trypanosoma brucei revealed by minisatellite variant repeat mapping. A ... Minisatellite marker analysis of Trypanosoma brucei: reconciliation of clonal, panmictic, and epidemic population genetic ... of Trypanosoma brucei rhodesiense infection were genetically distinct as characterized by 6 microsatellite and 1 minisatellite ...http://www.labome.org/topics/organisms/animals/invertebrates/protozoa/sarcomastigophora/mastigophora/zoomastigophora/kinetoplastida/trypanosomatina/trypanosoma/trypanosoma-brucei-rhodesiense-2179.html
Class 21 - Molecular Variation How to Assess it How do we identify variation at the molecular level ✓ Single base changes...
Genetics, DNA, Short tandem repeat, Variable number tandem repeat, Autosomal recessive c., Minisatellite ... DNA Sequencing Gene chips Multiple base changes Microsatellite repeat variation Minisatellite repeat variation (VNTR) ... Microsatellites are simple repeated elements of 2,3 or 4 bases (CA n , CTG n , CTAG n ) Position in genome is the same from ... Chromosomal changes Karyotype analysis Cytotology 2 3 Microsatellites - Simple Tandem Repeat Polymorphisms (STRP) ...https://www.coursehero.com/file/5801600/Class-21/
Patent EP2287307A2 - Materials and methods for identifying and analyzing intermediate tandem ... - Google Patents
... sequence is a region of a DNA sequence containing at least one five to seven base repeat unit appearing in tandem at least two ... The present invention is directed to materials and methods for the identification and analysis of intermediate tandem repeat ... sequences in DNA, wherein an intermediate tandem repeat (ITR) ... "minisatellite" repeats and longer repeats referred to as VNTRs ... a region of DNA containing at least two tandem repeats of a perfect repeat unit and at least one repeat of an imperfect repeat ...http://www.google.com.au/patents/EP2287307A2?cl=en
Frontiers | De Novo Sequencing and Analysis of Lemongrass Transcriptome Provide First Insights into the Essential Oil...
Also, simple sequence repeats (SSRs) were found in the transcriptome with many linked to terpene pathway genes including the ... Also, simple sequence repeats (SSRs) were found in the transcriptome with many linked to terpene pathway genes... ... The parameters used were at least 12 repeats for mono-, 6 repeats for di-, 5 for each tri- and tetra-, 4 for each penta- and ... minisatellites and microsatellites. Biochimie 79, 577-586. doi: 10.1016/S0300-9084(97)82006-8 ...https://www.frontiersin.org/articles/10.3389/fpls.2016.01129/full
List of MeSH codes (G06) - Wikipedia
... minisatellite repeats MeSH G06.184.603.080.708.850 --- terminal repeat sequences MeSH G06.184.603.080.708.850.400 --- hiv long ... tandem repeat sequences MeSH G06.184.603.080.708.800.140 --- dna repeat expansion MeSH G06.184.603.080.708.800.140.865 --- ... trinucleotide repeats MeSH G06.184.603.080.708.800.500.850.200 --- trinucleotide repeat expansion MeSH G06.184.603.080.708.800. ... microsatellite repeats MeSH G06.184.603.080.708.800.500.150 --- dinucleotide repeats MeSH G06.184.603.080.708.800.500.850 --- ...https://en.wikipedia.org/wiki/List_of_MeSH_codes_(G06)