*  Archaeal integrases and mechanisms of gene capture | Biochemical Society Transactions
... horizontal gene transfer; int, integrase gene; intN and intC, N-terminal and C-terminal part of integrase gene; ORF, open ... Archaeal integrases and mechanisms of gene capture. Q. She, B. Shen, L. Chen ... Archaeal integrases and mechanisms of gene capture Message Subject (Your Name) has forwarded a page to you from Biochemical ... Archaeal integrases facilitate the formation of two distinctive types of integrated element within archaeal chromosomes: the ...
  http://www.biochemsoctrans.org/content/32/2/222
*  MED: a new non-supervised gene prediction algorithm for bacterial and archaeal genomes | BMC Bioinformatics | Full Text
It continues to be interesting to develop new ab initio algorithms which not only accurately predict genes, but also facilitate ... a lack of comprehensive understanding of prokaryotic gene structures prevents from further elucidation of differences among ... Despite a remarkable success in the computational prediction of genes in Bacteria and Archaea, ... It is still problematic to evaluate gene prediction for archaeal genomes due to the insufficient number of genes confirmed by ...
  https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-8-97
*  Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea | Biology Direct |...
Horizontal Gene TransferGene GainArchaeal GenomeDescendant NodeReverse Gyrase. Background. A robust classification of genes ... The arCOGs were used to reconstruct gene loss and gene gain events during archaeal evolution and gene sets of ancestral forms. ... The Last Archaeal Common Ancestor (LACA) is conservatively estimated to possess 996 genes compared to 1245 and 1335 genes for ... The archaeal gene core (protein-coding genes found in all 41 genome) consists of 166 arCOGs. ...
  https://0-biologydirect-biomedcentral-com.brum.beds.ac.uk/articles/10.1186/1745-6150-2-33
*  Stabilization of an archaeal DNA-sliding clamp protein, PCNA, by proteasome-activating nucleotidase gene knockout in Haloferax...
Stabilization of an archaeal DNA-sliding clamp protein, PCNA, by proteasome-activating nucleotidase gene knockout in Haloferax ... Watson JD, Baker TA, Bell SP, Gann A, Levine M & Losick R (2008) Molecular Biology of the Gene. Cold Spring Harbor Laboratory ... Baumann A, Lange C & Soppa J (2007) Transcriptome changes and cAMP oscillations in an archaeal cell cycle. BMC Cell Biol 8: 21 ... Kirkland, P. A. and Maupin-Furlow, J. A. (2009), Stabilization of an archaeal DNA-sliding clamp protein, PCNA, by proteasome- ...
  http://onlinelibrary.wiley.com/doi/10.1111/j.1574-6968.2009.01547.x/references
*  When evaluating bacterial and archaeal genomes for genes, why must researchers evaluate six open reading frames? - AnswerMenu
When evaluating bacterial and archaeal genomes for genes, why must researchers evaluate six open reading frames? ... To map genes of a bacterial strain, conjugation must be interrupted at given times. Suppose you have Hfr cells of genotype a+b+ ... For codominant genes, a superscript is used. For example, the human blood type A allele is indicated as 'IA' and the Type B ... For codominant genes, the standard procedure of using capital and lowercase letters for the different alleles is inadequate. ...
  http://www.answermenu.com/3189/evaluating-bacterial-archaeal-researchers-evaluate-reading
*  Gene expression - Conservapedia
What happens to all this excess RNA? Eukaryotic genes (and some Archaeal gene) contain internal 'junk' (discovered in 1977). ... Genes are segments of DNA that contain the information required to make a protein. Gene expression refers to all the processes ... The size of introns is species-specific: yeasts have very few, some human genes can have 50 in a single gene! Typically there ... Gene expression is the process by which a DNA sequence yields a functional product such as, for example, protein.[1] If the DNA ...
  https://www.conservapedia.com/index.php?title=Gene_expression
*  tbp - TATA-box-binding protein - Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330...
General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the ... General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the ... p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source ... Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.,p>,a href='/help/gene_name' target='_top ...
  http://www.uniprot.org/uniprot/O27664
*  tbp - TATA-box-binding protein - Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) - tbp...
General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the ... General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the ... p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source ... Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.,p>,a href='/help/gene_name' target='_top ...
  http://www.uniprot.org/uniprot/O58737
*  Antievolution.org - Antievolution.org Discussion Board -Topic::The Origins of Photosynthesis
2000 How Much Did Horizontal Gene Transfer Contribute to Early Evolution?:. Quantifying Archaeal Genes in Two Bacterial ... Gene duplication has generated a heterodimeric reaction center that subsequently evolved to the PSI present in cyanobacteria, ... Further insight into the evolution of photosynthesis will have to rely on additional broader sampling of photosynthesis genes ... Further insight into the evolution of photosynthesis will have to rely on additional broader sampling of photosynthesis genes ...
  http://www.antievolution.org/cgi-bin/ikonboard/ikonboard.cgi?s=50ad884395f2b64d
*  Characterization of the First "Candidatus Nitrotoga" Isolate Reveals Metabolic Versatility and Separate Evolution of Widespread...
6 in the main text). The putative nxr genes are shown in orange, and the flanking archaeal genes are shown in blue. Wiggly ... Clustered genes, such as several tRNA genes, may appear as one line owing to space limitations. The tick interval is 0.2 Mbp. ... Genes at loci coding for NXR and hydrogenase, and the predicted functions of the respective gene products, are also shown. NirK ... In addition to the emrE gene on the plasmid (see above), "Ca. Nitrotoga fabula" has another QAC resistance gene (sugE) on the ...
  https://mbio.asm.org/content/9/4/e01186-18
*  TIGR03653
GenProp0815: archaeal-only core gene set (HMM). GenProp0831: archaeal core gene set, exactly 1 per genome (HMM). ... Gene Ontology Term. GO:0003735: structural constituent of ribosome molecular_function. GO:0006412: translation biological_ ... Members of this protein family are the archaeal form ofribosomal protein uL6 (previously L9 in yeast and human). The top- ...
  http://www.jcvi.org/cgi-bin/tigrfams/HmmReportPage.cgi?acc=TIGR03653
*  TIGR01012
Gene Ontology Term. GO:0003735: structural constituent of ribosome molecular_function. GO:0006412: translation biological_ ...
  http://www.jcvi.org/cgi-bin/tigrfams/HmmReportPage.cgi?acc=TIGR01012
*  The archaebacterial origin of eukaryotes | PNAS
2001) Phylogenetic analyses of two "archaeal" genes in Thermotoga maritima reveal multiple transfers between archaea and ... genes (,33). Although many eukaryotic operational genes are thought to have been gained by lateral gene transfer from either ... Gene sequence alignments of small-ribosomal RNA (SSU) genes and large-ribosomal RNA (LSU) genes were manually constructed. The ... Integrative modeling of gene and genome evolution roots the archaeal tree of life ...
  http://www.pnas.org/content/105/51/20356
*  Frontiers | Assembly and Succession of Iron Oxide Microbial Mat Communities in Acidic Geothermal Springs | Microbiology
Archaeal and Bacterial 16S rRNA Gene Illumina Sequencing and Analysis. Archaeal and bacterial 16S rRNA gene sequences were ... Barcoded 16S rRNA gene amplification using universal archaeal and bacterial primers (515F/806R; Caporaso et al., 2010; Earth ... For example, populations of a novel archaeal Group 3 (NAG3), which are phylogenetically related to the archaeal order ... 16S rRNA gene sequences (average length = 250 bp) with a database of relevant 16S rRNA gene sequences from YNP hot springs. ...
  https://www.frontiersin.org/articles/10.3389/fmicb.2016.00025/full
*  Elie Desmond-Le Quéméner - Mendeley
Phylogenomics of the archaeal flagellum: rare horizontal gene transfer in a unique motility structure. *Desmond E ...
  https://www.mendeley.com/profiles/elie-desmond-le-qumner/
*  Sandwalk: April 2017
... many scientific studies indicate that a majority of our genes are more similar to eubacterial genes than to archaeal genes. How ... Since 'change of gene frequencies in populations' is the 'official' definition of evolution, randomness has transgressed ... in eukaryotes, duplicates of individual genes cannot be effectively eliminated by selection and thus often persist and diverge ... The typical result is subfunctionalization, whereby the gene duplicates undergo differential mutational deterioration, losing ...
  http://sandwalk.blogspot.com/2017/04/
*  Sandwalk: The last molecular evolution exam: Question #3
... many scientific studies indicate that a majority of our genes are more similar to eubacterial genes than to archaeal genes. How ... But how are these genes expressed? By archaeal rules. Our nuclear genes aren't transcribed by means of eubacterial sigma ... many scientific studies indicate that a majority of our genes are more similar to eubacterial genes than to archaeal genes. How ... But how are these genes expressed? By archaeal rules. Our nuclear genes aren't transcribed by means of eubacterial sigma ...
  http://sandwalk.blogspot.com/2017/04/the-last-molecular-evolution-exam_9.html?showComment=1492775218162
*  Comparison of microbial communities associated with three Atlantic ultramafic hydrothermal systems - Roussel - 2011 - FEMS...
2008) Global occurrence of archaeal amoA genes in terrestrial hot springs. Appl Environ Microb 74: 6417-6426. *CrossRef, ... Reeve JN, Nolling J, Morgan RM & Smith DR (1997) Methanogenesis: genes, genomes, and who's on first? J Bacteriol 179: 5975-5986 ... Roussel EG, Sauvadet A-L, Allard J, Chaduteau C, Richard P, Cambon Bonavita M-A & Chaumillon E (2009a) Archaeal methane cycling ... Roussel EG, Sauvadet AL, Chaduteau C, Fouquet Y, Charlou JL, Prieur D & Cambon Bonavita MA (2009b) Archaeal communities ...
  http://onlinelibrary.wiley.com/doi/10.1111/j.1574-6941.2011.01161.x/references
*  Arkea - Wikipedia bahasa Indonesia, ensiklopedia bebas
"Evolutionary relationships of bacterial and archaeal glutamine synthetase genes". J Mol Evol 38 (6): 566-576. PMID 7916055. doi ... a b Gaasterland T (1999). "Archaeal genomics". Current Opinion in Microbiology 2 (5): 542-7. PMID 10508726. doi:10.1016/S1369- ... a b Allers T, Mevarech M; Mevarech (2005). "Archaeal genetics - the third way". Nature Reviews Genetics 6 (1): 58-73. PMID ... Lipps G (2008). "Archaeal Plasmids". Plasmids: Current Research and Future Trends. Caister Academic Press. ISBN 978-1-904455-35 ...
  https://id.wikipedia.org/wiki/Archaea
*  باستانیان - ویکی‌پدیا، دانشنامهٔ آزاد
... since most archaeal genes lack introns, although there are many introns in their transfer RNA and ribosomal RNA genes,[144] and ... Ng SY; Chaban B; Jarrell KF (2006). "Archaeal flagella, bacterial flagella and type IV pili: a comparison of genes and ... Asexual reproduction, horizontal gene transfer. Asexual reproduction, horizontal gene transfer. Sexual and asexual reproduction ... while most genes involved in genome expression are common between Archaea and Eukarya.[63] Within prokaryotes, archaeal cell ...
  https://fa.wikipedia.org/wiki/%D8%A8%D8%A7%D8%B3%D8%AA%D8%A7%D9%86%DB%8C%D8%A7%D9%86?match=en
*  Archaea - Wikipedia
... since most archaeal genes lack introns, although there are many introns in their transfer RNA and ribosomal RNA genes,[146] and ... Ng SY; Chaban B; Jarrell KF (2006). "Archaeal flagella, bacterial flagella and type IV pili: a comparison of genes and ... Asexual reproduction, horizontal gene transfer. Asexual reproduction, horizontal gene transfer. Sexual and asexual reproduction ... while most genes involved in genome expression are common between Archaea and Eukarya.[66] Within prokaryotes, archaeal cell ...
  https://en.m.wikipedia.org/wiki/Archaea
*  Similar articles for PubMed (Select 23184964) - PubMed - NCBI
Origins of major archaeal clades correspond to gene acquisitions from bacteria.. Nelson-Sathi S, Sousa FL, Roettger M, Lozada- ... Gene Acquisitions from Bacteria at the Origins of Major Archaeal Clades Are Vastly Overestimated. ... Widespread distribution of archaeal reverse gyrase in thermophilic bacteria suggests a complex history of vertical inheritance ... Archaeal phylogeny based on proteins of the transcription and translation machineries: tackling the Methanopyrus kandleri ...
  https://www.ncbi.nlm.nih.gov/pubmed?linkname=pubmed_pubmed&from_uid=23184964
*  Horizontal Gene Transfer Building Prokaryote Genomes: Genes Related to Exchange Between Cell and Environment are Frequently...
... as it allows genes evolved in different contexts to be combined in a single genome, greatly enhancing the... ... Horizontal gene transfer (HGT) has a major impact on the evolution of prokaryotic genomes, ... Podell S, Gaasterland T, Allen EE (2008) A database of phylogenetically atypical genes in archaeal and bacterial genomes, ... Horizontal gene transfer (HGT) has a major impact on the evolution of prokaryotic genomes, as it allows genes evolved in ...
  https://link.springer.com/article/10.1007%2Fs00239-018-9836-x
*  The Alternative Route to Heme in the Methanogenic Archaeon Methanosarcina barkeri
Previously, several archaeal genes were identified which were proposed to be involved in this alternative pathway, however, the ... b) Heme biosynthesis gene clusters in M. barkeri. Genes encoding enzymes which catalyze the early steps during heme formation ... biosynthesis enzyme NirJ [3, 6]. The heme biosynthesis gene clusters of M. barkeri (Figure 1(b)) contain two genes encoding two ... In contrast, in all other heme-synthesizing archaea these two genes are fused to one single gene encoding the predicted SH ...
  https://www.hindawi.com/journals/archaea/2014/327637/