*  NWMN 0480 - AureoWiki
Expression & Regulation[edit source , edit]. ⊟Operon[edit source , edit]. *NWMN_0480 no polycistronic organisation predicted ... HTH (CL0123) HTH_5; Bacterial regulatory protein, arsR family (PF01022; HMM-score: 9.8) ... Gene[edit source , edit]. ⊟General[edit source , edit]. *type: CDS. *locus tag: NWMN_0480 [new locus tag: NWMN_RS02810 ] ... Expression vector[edit source , edit]. ⊟lacZ fusion[edit source , edit]. ⊟GFP fusion[edit source , edit]. ⊟two-hybrid system[ ...
  http://aureowiki.med.uni-greifswald.de/NWMN_0480
*  Primary - U of U School of Medicine - | University of Utah
Gene Expression Regulation, Bacterial, Drug Resistance, Microbial, Genetics, Microbial. view full profile ... Gene Regulation, Development and Regulation of Immune Responses, Stem Cells, Transcriptional Control of Malignant State ... Immunology, Immunologic Memory, T Cell Biology, Viral infections, Bacterial Infections, Vaccination, Immunotherapy, Cancer ... Immunology, Microbial Pathogenesis, Genetic Regulation of Lyme Disease Severity, Pathogenesis of Borrelia Burgdorferi ...
  http://medicine.utah.edu/pathology/faculty/
*  PDE activities of the L. monocytogenes proteins PdeB-D. | Open-i
Bacterial Proteins/genetics/metabolism*. *Cyclic GMP/analogs & derivatives*/metabolism. *Gene Expression Regulation, Bacterial/ ... Deletion of all phosphodiesterase genes (ΔpdeB/C/D) or expression of a heterologous diguanylate cyclase stimulated production ... Deletion of all phosphodiesterase genes (ΔpdeB/C/D) or expression of a heterologous diguanylate cyclase stimulated production ... The synthesis of this exopolysaccharide was attributed to the pssA-E (lmo0527-0531) gene cluster. The last gene of the cluster ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC4125290_ppat.1004301.g002&req=4
*  Frontiers | Scoring Targets of Transcription in Bacteria Rather than Focusing on Individual Binding Sites | Microbiology
This approach is implemented for pleiotropic bacterial regulators, including σ70 (bacterial housekeeping σ factor) target ... This approach is implemented for pleiotropic bacterial regulators, including σ70 (bacterial housekeeping σ factor) target ... provides a fast and accurate approach for predicting bacterial transcription targets. ... provides a fast and accurate approach for predicting bacterial transcription targets. ...
  https://www.frontiersin.org/articles/10.3389/fmicb.2017.02314/full
*  Mass spectrometric analysis of rFap1 glycanThe glycans | Open-i
Gene Expression Regulation, Bacterial. Related in: MedlinePlus. © Copyright Policy Related In: Results - Collection ... we first characterized the glycosylation of recombinant Fap1 which we obtained by co-expression of recombinant Fap1 (rFap1)35 ... we first characterized the glycosylation of recombinant Fap1 which we obtained by co-expression of recombinant Fap1 (rFap1)35 ... catalyses the transfer of glucose to the branch point of the hexasaccharide O-linked to the serine-rich repeat of the bacterial ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC4352575_nihms603344f1&req=4
*  Secondary structure probing of the SR1/ahrC complex. (A | Open-i
Gene Expression Regulation, Bacterial. *Genes, Reporter. *Host Factor 1 Protein/physiology. *Molecular Sequence Data ... Here, we present a detailed in vitro analysis of SR1, a sRNA of Bacillus subtilis that is involved in regulation of arginine ... Here, we present a detailed in vitro analysis of SR1, a sRNA of Bacillus subtilis that is involved in regulation of arginine ... Small regulatory RNAs (sRNAs) from bacterial chromosomes became the focus of research over the past five years. However, ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC1935000_gkm439f3c&req=4
*  Alignment of the beta-subdomain of Geobacter CheR homol | Open-i
Finally, the regulation of gene expression in Geobacter differs from E. coli. The sequences of predicted promoter elements ... Finally, the regulation of gene expression in Geobacter differs from E. coli. The sequences of predicted promoter elements ... Gene Expression Regulation, Bacterial. *Genomics. *Molecular Sequence Data. *Multigene Family. *Promoter Regions, Genetic ... including gene regulation and biofilm formation, through functionally and spatially distinct signaling pathways. ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC2577667_1471-2164-9-471-3&req=4
*  The pneumococcal pilus is expressed in the absence of R | Open-i
Gene Expression Regulation, Bacterial. *Humans. *Mice. *Mice, Inbred C57BL. *Microscopy, Immunoelectron. *Protein Binding ... we sought to determine the form of RrgA on the bacterial surface in the presence and absence of RrgB and RrgC expression. Cell ... we sought to determine the form of RrgA on the bacterial surface in the presence and absence of RrgB and RrgC expression. Cell ... RrgC-positive pili are formed in the absence of rrgA expression, but not in the absence of expression of rrgB and rrgC. In the ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC2170534_mmi0066-0329-f3&req=4
*  Classification of differentially regulated 372 genes in | Open-i
Classification of differentially regulated 372 genes into six groups based on their transcription directions after 20 and 60 ... Gene Expression Profiling. *Gene Expression Regulation, Bacterial. *Genes, Bacterial. *Genomics. *Humans. *Oligonucleotide ... This gene expression profile can now be utilized for a better understanding of the target cellular pathways of OPP in P. ... This gene expression profile can now be utilized for a better understanding of the target cellular pathways of OPP in P. ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC2577666_1471-2164-9-473-3&req=4
*  Effect of CRP-cAMP deficiency on the expression of the | Open-i
... fimA expression was monitored by measuring ß-galactosidase activity from a chromosomal ... Effect of CRP-cAMP deficiency on the expression of the fimA gene.(A-B) ... Gene Expression Regulation, Bacterial. *Integrases/genetics/metabolism. *Leucine-Responsive Regulatory Protein/metabolism ... ppat-1000303-g001: Effect of CRP-cAMP deficiency on the expression of the fimA gene.(A-B) fimA expression was monitored by ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC2636892_ppat.1000303.g001&req=4
*  Linear regression for prediction of the antisense activ | Open-i
Gene Expression Regulation, Bacterial*. *Oligonucleotides, Antisense/chemistry*/pharmacology. Minor. *Algorithms. *Cell-Free ... The combination of the structure-based antisense design and extension of the lacZ assay to include gene fusions will be ... The combination of the structure-based antisense design and extension of the lacZ assay to include gene fusions will be ... This assay is used for measuring the expression of Escherichia coli lacZ, the antisense target for experimental testing and ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC1636493_gkl715f5&req=4
*  Expression profiles of the 10 genes selected for the st | Open-i
... profiles of the 10 genes selected for the stability of their expression level and the synthetic RNA pAW.Gene expression ... Gene Expression Regulation, Bacterial*. *Genes, Bacterial/genetics*. *Reverse Transcriptase Polymerase Chain Reaction/methods*/ ... an initial set of 49 expressed genes with very low variation in gene expression. Out of these, we retained 10 genes ... an initial set of 49 expressed genes with very low variation in gene expression. Out of these, we retained 10 genes ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC3102694_pone.0020269.g002&req=4
*  Dimerization of ANTAR-containing proteins.A) Comparison | Open-i
Bacterial Proteins/genetics/metabolism. *Gene Expression Regulation, Bacterial. *Phosphorylation. *Phylogeny. *Protein ... associated genes are thematically related to nitrogen management.These data suggest that the central tenets for gene regulation ... associated genes are thematically related to nitrogen management.These data suggest that the central tenets for gene regulation ... The mechanism for RNA recognition by ANTAR regulators of gene expression. Ramesh A, DebRoy S, Goodson JR, Fox KA, Faz H, Garsin ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC3369931_pgen.1002666.g005&req=4
*  "Structure and transcriptional regulation of the Escherichia coli adapt" by Paolo Landini, Laurel I. Hajec et al.
In this report, we present data on aidB gene structure, function, and regulation. The aidB gene encodes a protein of ca. 60 kDa ... Ada protein plays a direct role in aidB regulation: methylated Ada is able to bind to the aidB promoter region and to activate ... Expression of the Escherichia coli aidB gene is induced in vivo by alkylation damage in an ada-dependent pathway and by ... Gene Expression Regulation, Bacterial; Isovaleryl-CoA Dehydrogenase; Methylnitronitrosoguanidine; Molecular Sequence Data; ...
  https://escholarship.umassmed.edu/oapubs/662/
*  "Understanding signal transduction during bacterial infection" by Brian J. Akerley and Jeff F. Miller
In Bordetella species, the BvgAS system represses and activates sets of genes, and mediates a biphasic phenotypic transition. ... Many known or suspected bacterial virulence factors require environmentally responsive control factors for expression. ... Animals; Bacterial Proteins; Bordetella Infections; Gene Expression Regulation, Bacterial; Humans; *Signal Transduction; ... Many known or suspected bacterial virulence factors require environmentally responsive control factors for expression. In ...
  https://escholarship.umassmed.edu/mgm_pp/24/
*  Western blot analysis of protein A production. Analysis | Open-i
Gene Expression Profiling. *Gene Expression Regulation, Bacterial. *Humans. *Methicillin Resistance. *Mutation/genetics ... Different bacterial gene expression patterns and attenuated host immune responses are associated with the evolution of low- ... Different bacterial gene expression patterns and attenuated host immune responses are associated with the evolution of low- ... Up-regulation of genes associated with the "cell wall stimulon" and mutations in the vraSR operon have both been implicated in ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC2289824_1471-2180-8-39-3&req=4
*  NMR investigations of the PmrA-DNA complex.The overla | Open-i
Gene Expression Regulation, Bacterial. *Models, Molecular. *Protein Structure, Tertiary. *Trans-Activators/chemistry/metabolism ... Reporter gene analyses of PmrA variants with altered interface residues suggest that the interface is not crucial for ... supporting gene expression. We propose that REC-DBD interdomain dynamics and the DBD-DBD interface help PmrA interact with RNA ... Reporter gene analyses of PmrA variants with altered interface residues suggest that the interface is not crucial for ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC4660055_ncomms9838-f4&req=4
*  Regulation the PahdIMS activity in vitro and in vivo. ( | Open-i
Regulation the PahdIMS activity in vitro and in vivo. (A) A single-round transcription in vitro by E.coli RNAP σ70 holoenzyme ( ... B) Effect of methylation on the expression of ahdIM gene. Plasmid pPM containing transcriptional fusion PahdIM'::'lacZ were co- ... only methylase gene is active), bacterial cultures were grown until OD600 0.5 and β-galactosidase activity was measured in ... B) Effect of methylation on the expression of ahdIM gene. Plasmid pPM containing transcriptional fusion PahdIM'::'lacZ were co- ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC2275141_gkm1116f8&req=4
*  ZmpI-mediated release of the cell wall-associated CD283 | Open-i
Gene Expression Regulation, Bacterial*. *Metalloproteases/metabolism*. *Peptide Hydrolases/metabolism*. Minor. *Adhesins, ... whose expression is controlled by a type I c-diGMP riboswitch.These data reveal a novel regulatory mechanism for expression of ... whose expression is controlled by a type I c-diGMP riboswitch.These data reveal a novel regulatory mechanism for expression of ... Bottom Line: Low c-diGMP levels induce the release of CD2831 and presumably CD3246 from the surface of cells.This regulation is ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC4591827_zbc0441527550002&req=4
*  Detection of (p)ppGpp in B. burgdorferi B31 grown at 34 | Open-i
DNA, Bacterial/genetics. *DNA, Ribosomal/genetics. *Escherichia coli/genetics. *Gene Expression Regulation, Bacterial ... RNA genes whose patterns of transcription and regulation are unknown but are likely to be critical for survival and persistence ... RNA genes whose patterns of transcription and regulation are unknown but are likely to be critical for survival and persistence ... Patterns and regulation of ribosomal RNA transcription in Borrelia burgdorferi. Bugrysheva JV, Godfrey HP, Schwartz I, Cabello ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC3037291_1471-2180-11-17-4&req=4
*  Absorption spectra of BChl a-associated proteins from v | Open-i
Gene transfer and expression systems in green sulfur bacteria were established by bacterial conjugation with Escherichia coli. ... Gene transfer and expression systems in green sulfur bacteria were established by bacterial conjugation with Escherichia coli. ... The expression plasmid based on pDSK5191 was constructed by incorporating the upstream and downstream regions of the pscAB gene ... The expression plasmid based on pDSK5191 was constructed by incorporating the upstream and downstream regions of the pscAB gene ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC3842273_pone.0082345.g004&req=4
*  Measured RPU values for the five investigated promoters | Open-i
Gene Expression Regulation, Bacterial*. *Transcription, Genetic*. Minor. *Escherichia coli/genetics. *Genes, Reporter ... Second, promoter activity variation was measured when two independent gene expression cassettes were assembled in the same ... Second, promoter activity variation was measured when two independent gene expression cassettes were assembled in the same ... when they are used within a two-expression-cassette system (up to 35%) and when they drive another device in a functionally ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC3401228_pone.0039407.g002&req=4
*  Pathway schematic depicting changes that occurred in me | Open-i
... gene expression, and enzymatic activities for central metabolism during the transitio ... Gene Expression Regulation, Bacterial. *Metabolic Networks and Pathways. *Methanol/metabolism/pharmacology. *Models, Biological ... yet expression of that gene is high, or if a gene has a significant change in expression but expression is extremely low. ... yet expression of that gene is high, or if a gene has a significant change in expression but expression is extremely low. ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC2991311_pone.0014091.g004&req=4
*  Immune co-precipitation. A. Affinity purified proteins, | Open-i
Gene Expression Regulation, Bacterial. *Protein Binding. Related in: MedlinePlus. © Copyright Policy Related In: Results - ... In Chlamydiaceae the hit gene is flanked upstream by a gene predicted to encode a metal dependent hydrolase and downstream by a ... In Chlamydiaceae the hit gene is flanked upstream by a gene predicted to encode a metal dependent hydrolase and downstream by a ... Results: An cluster of hitABL genes, similar to that of M. hominis was found in M. pulmonis, M. mycoides subspecies mycoides SC ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC1173108_1471-2180-5-27-7&req=4
*  sRNA oxyS and its targets in the gene-regulation and pr | Open-i
The dark green lines represent experimentally verified regulation and ... sRNA oxyS and its targets in the gene-regulation and protein-protein interaction networks. ... Gene Expression Regulation, Bacterial*. *Gene Regulatory Networks*. *RNA, Small Untranslated/genetics*/metabolism* ... Yellow lines are also indirect regulation, but indicate genes of a predicted target. Dashed lines indicate regulated genes ...
  https://openi.nlm.nih.gov/detailedresult.php?img=PMC2957679_1471-2105-11-S7-S11-1&req=4