Comprehensive Gene Expression Analysis of Prostate Cancer Reveals Distinct Transcriptional Programs Associated with Metastatic...
3 The abbreviations used are: MSKCC, Memorial Sloan-Kettering Cancer Center; EST, expressed sequence tag. ... The entire list of 3,436 differentially expressed sequences is available in the supplementary material. ... 2) ⇓ and PSA, AR (data not shown)]. Several of the genes that we identified as highly differentially expressed have been ... Identification of Differentially Expressed Genes.. An unsupervised analysis of gene expression in all 32 prostate cancers based ...http://cancerres.aacrjournals.org/content/62/15/4499.full
Analysis of expressed sequence tags from Ginkgo mature foliage in China | SpringerLink
We performed an analysis of expressed sequence tags (ESTs) and obtained partial sequences from 2,039 clones, which represented ... Generation of expressed sequence tags of random root cDNA clones of Brassica napus by single-run partial sequencing. Plant ... Comparative analysis of expressed sequence tags of conifers and angiosperms reveals sequences specifically conserved in ... analysis of 5,692 expressed sequence tags. Proc Natl Acad Sci USA 95:13330-13335CrossRefPubMedGoogle Scholar ...https://link.springer.com/article/10.1007%2Fs11295-009-0254-5
Gene Studies Expressed Sequence Tags (EST)
Select one publish paper in Expressed Sequence Tags and Describe the briefly methodology involved in preparing an EST database ... Analysis of 5,692 expressed sequence tags", by Sterky et al., 1998, expressed sequence tags (EST) database was prepared with ... www.ukessays.com/essays/biology/expressed-sequence-tags-est-gene-7057.php?vref=1 ,title=Gene Studies Expressed Sequence Tags ( ... Gene Studies Expressed Sequence Tags (EST). Retrieved from https://www.ukessays.com/essays/biology/expressed-sequence-tags-est- ...https://www.ukessays.com/essays/biology/expressed-sequence-tags-est-gene-7057.php
Analysis of expressed sequence tags in developing secondary xylem and shoot of Acacia mangium | SpringerLink
... a large-scale analysis of expressed sequence tags (ESTs) has not been performed in A. mangium. In this study, we sequenced 10 ... Wang Y, Chu Y, Liu G, Wang M, Jiang J, Hou Y, Qu G, Yang C (2006) Identification of expressed sequence tags in an alkali grass ... Tsugane T, Watanabe M, Yano K, Sakurai N, Suzuki H, Shibata D (2005) Expressed sequence tags of full-length cDNA clones from ... Analysis of expressed sequence tags in developing secondary xylem and shoot of Acacia mangium ...https://link.springer.com/article/10.1007%2Fs10086-010-1141-2
Differentially displayed expressed sequence tags in Melipona scutellaris (Hymenoptera, Apidae, Meliponini) development
SANTANA, Flávia A. et al. Differentially displayed expressed sequence tags in Melipona scutellaris (Hymenoptera, Apidae, ... Six, out of the nine ESTs described here, presented differentially expressed in the phases L1 or L2, or even in both of them, ...http://www.scielo.br/scielo.php?script=sci_abstract&pid=S0001-37652006000100008&lng=en&nrm=iso&tlng=en
Expressed sequence tag - Wikipedia
In genetics, an expressed sequence tag (EST) is a short sub-sequence of a cDNA sequence. ESTs may be used to identify gene ... Because of the way ESTs are sequenced, many distinct expressed sequence tags are often partial sequences that correspond to the ... Jun 1991). "Complementary DNA sequencing: expressed sequence tags and human genome project". Science. 252 (5013): 1651-6. doi: ... In an effort to reduce the number of expressed sequence tags for downstream gene discovery analyses, several groups assembled ...https://en.wikipedia.org/wiki/Expressed_sequence_tag
Molecular Vision: Expression profiles during dedifferentiation in newt lens regeneration revealed by expressed sequence tags
An Ambystoma mexicanum EST sequencing project: analysis of 17,352 expressed sequence tags from embryonic and regenerating ... Expression profiles during dedifferentiation in newt lens regeneration revealed by expressed sequence tags. Nobuyasu Maki,1,2 ... The expression sequence tag (EST) resource is useful for the future study of newt dedifferentiation, and the sequence ... Sequencing, assembly, and functional annotation of newt expression sequence tags. As mentioned previously dedifferentiation ...http://www.molvis.org/molvis/v16/a9/
PHOREST: a web-based tool for comparative analyses of expressed sequence tag data
... Ahrén, Dag LU ; Troein, Carl LU ; Johansson ... Additionally, expressed sequence tag database information can be used for the construction of DNA microarrays and for the ... Additionally, expressed sequence tag database information can be used for the construction of DNA microarrays and for the ... Comparative analysis of expressed sequence tags is becoming an important tool in molecular ecology for comparing gene ...https://lup.lub.lu.se/search/publication/135646
Analysis of expressed sequence tags derived from a compatible Mycosphaerella fijiensis-banana interaction
"Analysis of Expressed Sequence Tags Derived from a Compatible Mycosphaerella Fijiensis-banana Interaction." Plant Cell Reports ... "Analysis of Expressed Sequence Tags Derived from a Compatible Mycosphaerella Fijiensis-banana Interaction." PLANT CELL REPORTS ... Analysis of expressed sequence tags derived from a compatible Mycosphaerella fijiensis-banana interaction. Orelvis Portal ... 2011). Analysis of expressed sequence tags derived from a compatible Mycosphaerella fijiensis-banana interaction. PLANT CELL ...https://biblio.ugent.be/publication/1251461
IJMS | Free Full-Text | Generation and Analysis of Expressed Sequence Tags (ESTs) from Halophyte Atriplex canescens to Explore...
Additionally, among the 343 unigenes sequences, 22 simple sequence repeats (SSRs) were also identified contributing to the ... In an evaluation of 343 valid EST sequences in the cDNA library, 197 unigenes were assembled, among which 190 unigenes (83.1% ... All the 343 EST sequences have been deposited in the dbEST GenBank under accession numbers JZ535802 to JZ536144. According to ... expressed sequence tags; salt stress tolerance; SSRs Atriplex canescens; cDNA library; expressed sequence tags; salt stress ...http://mdpi.com/1422-0067/15/6/11172/xml
Analysis of Expressed Sequence Tags From Two Starvation, Time-of-Day-Specific Libraries of Neurospora crassa Reveals Novel...
Therefore, it was decided to use an expressed sequence tag (EST) sequencing approach to address the question of clock ... 2000 Identification of differentially expressed genes in cardiac hypertrophy by analysis of expressed sequence tags. Genomics ... 20,000 sequences. Contig analysis allowed the identification of 445 unique expressed sequence tags (ESTs) and 986 ESTs present ... Analysis of Expressed Sequence Tags From Two Starvation, Time-of-Day-Specific Libraries of Neurospora crassa Reveals Novel ...http://www.genetics.org/content/157/3/1057
Chasing Migration Genes: A Brain Expressed Sequence Tag Resource for Summer and Migratory Monarch Butterflies (Danaus plexippus)
Here, we describe a brain expressed sequence tag (EST) resource to identify genes involved in migratory behaviors. A brain EST ... Of 9,484 unique sequences, 6068 had positive hits with the non-redundant protein database; the EST database likely represents ∼ ...http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0001345
Analysis of Codon Usage Patterns in Toxic Dinoflagellate Alexandrium tamarense through Expressed Sequence Tag Data
... tamarense CCMP 1598 for protein-coding sequences from 10865 expressed sequence tags (ESTs). We reconstructed a total of 4284 ... Dinoflagellate expressed sequence tag data indicate massive transfer of chloroplast genes to the nuclear genome. Protist. 2004; ... Insights into a dinoflagellate genome through expressed sequence tag analysis. BMC Genomics. 2005;6(1, article 80) [PMC free ... Tanikawa N, Akimoto H, Ogoh K, Chun W, Ohmiya Y. Expressed sequence tag analysis of the dinoflagellate Lingulodinium polyedrum ...http://pubmedcentralcanada.ca/pmcc/articles/PMC2967832/
A Comprehensive Expressed Sequence Tag Linkage Map for Tiger Salamander and Mexican Axolotl: Enabling Gene Mapping and...
Recently completed expressed sequence tag (EST) sequencing projects for two tiger salamander species, A. mexicanum (Haberman et ... Expressed sequence tag (EST) markers were developed for Ambystoma tigrinum tigrinum (Eastern tiger salamander) and for A. ... A Comprehensive Expressed Sequence Tag Linkage Map for Tiger Salamander and Mexican Axolotl: Enabling Gene Mapping and ... A Comprehensive Expressed Sequence Tag Linkage Map for Tiger Salamander and Mexican Axolotl: Enabling Gene Mapping and ...http://www.genetics.org/content/171/3/1161
"Expressed sequence tags from <i>Diabrotica virgifera virgifera</i> mid" by Blair D. Siegfried, N....
Of the remaining sequences, most predict proteins with either catalytic (62%) or binding (19%) functions, as expected for ... Here we describe a collection of 691 sequences from the Western corn rootworm midgut, 27% of which predict proteins with no ... proteins expressed in the insect midgut. The utility of this approach for the identification of targets for novel toxins is ... Expressed sequence tags from Diabrotica virgifera virgifera midgut identify a coleopteran cadherin and a diversity of ...https://digitalcommons.unl.edu/entomologyfacpub/74/
"Functional Analysis and Comparative Genomics of Expressed Sequence Tag" by Jing-Ke Weng, Milos Tanurdzic et al.
Results We sequenced 2181 Expressed Sequence Tags (ESTs) from a S. moellendorffii cDNA library. One thousand three hundred and ... thaliana tentative consensus sequences. We compared S. moellendorffii ESTs to the A. thaliana and Physcomitrella patens EST ... one non-redundant sequences were assembled, containing 291 contigs and 1010 singletons. Approximately 75% of the ESTs matched ... We sequenced 2181 Expressed Sequence Tags (ESTs) from a S. moellendorffii cDNA library. One thousand three hundred and one non- ...https://docs.lib.purdue.edu/biochempubs/3/
Analyses of expressed sequence tags of anther and anther-specific cDNA Clones in Nicotiana tabacum | Springer for Research &...
Expressed sequence tag (EST) analysis of tobacco ( Nicotiana tabacum) anthers was performed for 200 cDNA clones randomly chosen ... Expressed sequence tags of fruits, peels, and carpels and analysis of mRNA expression levels of the tagged cDNAs of fruits from ... Analysis of 176 expressed sequence tags generated from cDNA clones of hot pepper by single-path sequencing. J Plant Biol 41: ... Lim CO, Kim HY, Kim MG, Lee SI, Chung WS, Park SH, Hwang I, Cho MJ (1996) Expressed sequence tags of Chinese cabbage flower bud ...https://rd.springer.com/article/10.1007/BF03030503
A tree-structured index algorithm for expressed sequence tags clustering
Abstract Expressed sequence tags (ESTs) are complementary deoxyribonucleic acid (cDNA) fragments, which are reverse transcribed ... ESTs are a readily rich information source of complete expressed gene sequences. They reveal the type and number of genes being ... This enables efficient consensus sequences generation, which reveals underlying gene sequences and their possible alternative ... expressed in an organism. Joining ESTs into complete gene sequences is computationally expensive because they are numerous, ...http://wiredspace.wits.ac.za/handle/10539/6001?show=full
Survey of glycine-rich proteins (GRPs) in the Eucalyptus expressed sequence tag database
... .. ... Survey of glycine-rich proteins (GRPs) in the Eucalyptus expressed sequence tag database. ... Survey of glycine-rich proteins (GRPs) in the Eucalyptus expressed sequence tag database. ... GRPs specifically expressed in xylem, phloem, epidermis, anther tapetum and roots have been described. In this paper, the ...http://www.lume.ufrgs.br/handle/10183/23384
Analysis of expressed sequence tags from the ectoparasitic nematode Xiphinema index » Brill Online
Genes encoding a variety of proteases, which were shown using in situ hybridisation to be expressed in the gut, were also ... Approximately 1400 genes were sequenced, 70% from a cDNA library generated from dissected basal bulbs (containing the ... proteins were abundant in the bulb library and in situ hybridisation confirmed that one of these is expressed in the basal bulb ... We report the results of a small-scale expressed sequence tag project performed on the ectoparasitic nematode Xiphinema index. ...http://booksandjournals.brillonline.com/content/journals/10.1163/1568541054192180
Large-scale development of expressed sequence tag-derived simple sequence repeat markers and diversity analysis inArachisspp. |...
Large-scale development of expressed sequence tag simple sequence repeat (EST-SSR) markers was performed in peanut (Arachis ... Kantety RV, La Rota M, Matthews DE, Sorrells ME (2002) Data mining for simple sequence repeats in expressed sequence tags from ... Large-scale development of expressed sequence tag-derived simple sequence repeat markers and diversity analysis in Arachis spp. ... Large-scale development of expressed sequence tag simple sequence repeat (EST-SSR) markers was performed in peanut (Arachis ...https://link.springer.com/article/10.1007%2Fs11032-011-9604-8
IJMS | Free Full-Text | Flavonoid Biosynthesis Genes Putatively Identified in the Aromatic Plant Polygonum minus via Expressed...
Thus, large‑scale sequencing of P. minus cDNA libraries identified 4196 expressed sequences tags (ESTs) which were deposited in ... Sequence Analysis and Potentials of the Native RbcS Promoter in the Development of an Alternative Eukaryotic Expression System ...http://www.mdpi.com/1422-0067/13/3/2692/notes
"An Evolutionary Expressed Sequence Tag Analysis of <i>Drosophila</i> S" by Adrianne Prokupek, Federico G....
This study investigates genes enriched for expression in the spermatheca, the long-term sperm storage organ (SSO) of female Drosophila. SSO genes are likely to play an important role in processes of sexual selection such as sperm competition and cryptic female choice. Although there is keen interest in the mechanisms of sexual selection at the molecular level, very little is known about the female genes that are involved. In the present study, a high proportion of genes enriched for expression in the spermatheca are evolving rapidly. Most of the rapidly evolving genes are proteases and genes of unknown function that could play a specialized role in the spermatheca. A high percentage of the rapidly evolving genes have secretion signals and thus could encode proteins that directly interact with ejaculate proteins and coevolve with them. In addition to identifying rapidly evolving genes, the present study documents categories of genes that could play a role in spermatheca function such as storing,http://digitalcommons.unl.edu/bioscigenetics/7/
Generation and analysis of expressed sequence tags (ESTs) for marker development in yam (Dioscorea alata L.) | BMC Genomics |...
Generation and analysis of expressed sequence tags (ESTs) for marker development in yam (Dioscorea alata L.). ... Sequence assembly, analysis and annotation. *a.. Preliminary sequencing data analysis: The Sanger sequences were analyzed using ... 454 sequence data analysis: The sequencing agency provided high quality raw reads as well as aligned EST sequences for three ... The vector sequences from each sequence were trimmed manually, Sequences less than 150 base pairs were removed and then ESTs ...https://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-12-100
Large-scale development of expressed sequence tag-derived simple sequence repeat markers by deep transcriptome sequencing in...
The lack of simple sequence repeat (SSR) markers is a major obstacle in genetic... ... Large-scale development of expressed sequence tag-derived simple sequence repeat markers by deep transcriptome sequencing in ... Diversity analysis in Cannabis sativa based on large-scale development of expressed sequence tag-derived simple sequence repeat ... Construction and evaluation of cDNA libraries for large-scale expressed sequence tag sequencing in wheat (Triticum aestivum L ...https://rd.springer.com/article/10.1007/s11032-015-0399-x