*  Browsing: Structural exon database
Found in WebWatch in Biotechniques, the Structural Exon Database, SEDB. Introductory page says:. "Comparative analysis of exon/ ... We present SEDB, the Structural Exon Database, with a web interface, an application which allows users to retrieve the exon/ ... intron organization of genes and map the location of the exon boundaries and intron phase onto a multiple structural alignment ... which allows simultaneous visualization of exon boundaries on structure and sequence alignments. With SEDB researchers can ...
  http://browsing.blogspot.com/2008/07/structural-exon-database.html
*  Structural Biochemistry/Nucleic Acid/RNA/RNA modification - Wikibooks, open books for an open world
This leads to the concept of exon shuffling. Exons shuffling is the rearrangement of the exons in the mRNA. These mRNA will ... Spicing all exons together is called mature mRNA.. What's the advantage of spitting genes? Exons are segments that coding ... leaving only exons (expressed sequences/coding proteins). Cutting out the intron segments allows for the possibility of exon to ... Even though the use of exons and introns are quite common in eukaryotes, such practice is rarely performed by prokaryotes. In ...
  https://en.wikibooks.org/wiki/Structural_Biochemistry/Nucleic_Acid/RNA/RNA_modification
*  Biology-Online • View topic - no repeat sequences in exons of genes?
BUT ... in case not: the ribosome would try to read it - it would NOT just skip over it! if it was at the first exon, it might ... My theory would be that if inserted into the exon the repeat sequence would cause a frameshift mutation and cause problems with ... My theory would be that if inserted into the exon the repeat sequence would cause a frameshift mutation and cause problems with ... but nowhere in my book did it mention what would happen if a repeat sequence would be put into an exon. ...
  http://www.biology-online.org/biology-forum/about22518.html?hilit=Diseases
*  PLOS Genetics: Widespread Shortening of 3' Untranslated Regions and Increased Exon Inclusion Are Evolutionarily Conserved...
... with systematic shifts towards increased cassette exon inclusion and shortening of Tandem 3' UTRs post-infection. These ... Widespread Shortening of 3' Untranslated Regions and Increased Exon Inclusion Are Evolutionarily Conserved Features of Innate ...
  http://journals.plos.org/plosgenetics/article/figure?id=10.1371/journal.pgen.1006338.g003
*  Genes | Free Full-Text | Aberrant Single Exon Skipping is not Altered by Age in Exons of NF1, RABAC1, AATF or PCGF2 in Human...
Splicing noise frequency was measured for four erroneously skipped NF1 exons and one exon of RABAC1, AATF and PCGF2 by RT-qPCR ... One characteristic subgroup consists of products lacking one cassette exon. The noise in the splicing process, represented by ... splicing error frequencies are not altered by age in peripheral blood cells or in vitro aged fibroblasts in the tested exons of ... Aberrant Single Exon Skipping is not Altered by Age in Exons of NF1, RABAC1, AATF or PCGF2 in Human Blood Cells and Fibroblasts ...
  http://www.mdpi.com/2073-4425/2/3/562
*  Identification of evolutionarily conserved exons as regulated targets for the splicing activator tra2β in development. - Durham...
Regulated exons included a cassette exon which produces a meiotic isoform of the Nasp histone chaperone that helps monitor DNA ... Using CLIP coupled to deep sequencing, we found that Tra2β binds a high frequency of exons and identified specific G/A rich ... Versions of Tra2β lacking this N-terminal RS1 domain potently repressed the same target exons activated by full-length Tra2β ... Tra2β protein isoforms lacking the RRM were able to activate specific target exons indicating an additional functional role as ...
  http://dro.dur.ac.uk/10537/
*  PLOS Genetics: Widespread Shortening of 3' Untranslated Regions and Increased Exon Inclusion Are Evolutionarily Conserved...
... with systematic shifts towards increased cassette exon inclusion and shortening of Tandem 3' UTRs post-infection. These ... B) Distributions of ΔΨ values for skipped exons (purple) and TandemUTRs (blue) following infection of whole blood cells with ... Widespread Shortening of 3' Untranslated Regions and Increased Exon Inclusion Are Evolutionarily Conserved Features of Innate ...
  http://journals.plos.org/plosgenetics/article/figure?id=10.1371/journal.pgen.1006338.g004
*  Plus it
... is alternatively spliced removing the transcriptional repression domain within exon 2 (FIRΔexon2) in colorectal cancers. SAP155 ...
  http://mcr.aacrjournals.org/content/early/2012/05/22/1541-7786.MCR-11-0462
*  A Newly Created Splice Donor Site in Exon 25 of the MyBP-C Gene Is Responsible for Inherited Hypertrophic Cardiomyopathy With...
Unscheduled splicing of exon 25 of MyBP-C mRNA would result in a reading frame shift with a stop in exon 26, which in turn ... end of this exon was identified as missing, a result suggesting modified splicing (Figure 2A⇓). In cloned genomic exon 25 DNA, ... end of exon 25. Premature stop in exon 26 is indicated by ★. B, Postulated truncation would result in 95-kDa protein (wild-type ... screening of all 35 coding exons of the gene revealed altered mobility of exon 25 (Figure 3⇓) in the DNA of those diagnosed as ...
  http://circ.ahajournals.org/content/101/12/1396
*  Performances de la puce exon et son application dans l'analyse de l'épissage alternatif associé à la métastase du cancer de sein
La puce exon est requise dans l'analyse de l'épissage alternatif associé aux pathologies telles que les cancers et les troubles ... We propose that the Exon Array is a highly effective tool for transcript isoform profiling, and that it should be used in a ... Performances de la puce exon et son application dans l'analyse de l'épissage alternatif associé à la métastase du cancer de ... Nous montrons l'utilisation de la puce exon d'Affymetrix pour l'analyse simultanée de l'expression des gènes et de la variation ...
  https://papyrus.bib.umontreal.ca/xmlui/handle/1866/3628
*  How To Get Bed File Containing Exons Of Canonical Transcripts And Their Corresponding Gene Symbols
Multiple Exon Start and End sites in UCSC Exons table So i'm attempting to get some information for hg19 exons: I need chr, ... Chromosome Name Exon Chr Start (bp) Exon Chr End (bp) Associated Gene Name Exon Rank in Transcript 1 955551 955753 AGRN 1 1 ... exon_1_0_chr1_12613_f 0 + chr1 13220 14409 uc001aaa.3_exon_2_0_chr1_13221_f 0 + chr1 11873 12227 uc010nxr.1_exon_0_0_chr1_11874 ... exon_2_0_chr1_13221_f 0 + chr1 11873 12227 uc010nxq.1_exon_0_0_chr1_11874_f 0 + chr1 12594 12721 uc010nxq.1_exon_1_0_chr1_12595 ...
  https://www.biostars.org/p/93011/
*  Classification of Short Human Exons and Introns based on Statistical Features
The classification of human gene sequences into exons and introns is a difficult problem in DNA sequence analysis. In this ... which is derived from the Z-curve features for the recognition of human exons and introns. The classification results show that ...
  https://research-repository.griffith.edu.au/handle/10072/21795
*  Plus it
... with only one additional exon located upstream of the coding exon. This exon contains multiple transcription start sites (with ... Like CB1R, the CB2R coding region is contained in a single exon and is flanked by upstream noncoding exons in human, mouse, and ... 2009) of CB2A and -B isoforms transcribed from promoters flanking exon 1 and 2, like human and mouse CB2R. Rat CB2A and -B also ... Human CB2R consists of three exons alternatively transcribed and spliced to yield isoforms CB2A and -B (Liu et al., 2009). CB2B ...
  http://pharmrev.aspetjournals.org/content/63/3/461
*  Discovery of tissue-specific exons using comprehensive human exon microarrays | Genome Biology | Full Text
While microarray designs that include exon-exon junctions do provide an additional bit of information about how exons are ... Probes that span exon-exon junctions can discriminate between isoforms and provide useful information about how exons are ... Small exons that are less than 17 bp, for example, are not included in our design. It is also possible for an exon to be missed ... Discovery of novel exons. (a) RT-PCR validation of predicted brain-enriched exons. (b) Sequences of RT-PCR products from ...
  https://genomebiology.biomedcentral.com/articles/10.1186/gb-2007-8-4-r64
*  Predicting mutually exclusive spliced exons based on exon length, splice site and reading frame conservation, and exon sequence...
... all twelve exons of the exon 4 cluster were identified, both exons of the exon 17 cluster, and 46 and 32 exons for the exon 6 ... The alternative exons corresponding to the same original exon constitute a cluster. Exons of a cluster get the same colour. The ... c One of the exons is a pseudo-exon because it misses the last forth of the exon because of an in-frame stop codon. ... Type B and type C exons are false positives, when looking for mutually exclusive exons. In addition, false positive exons are ...
  https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-12-270
*  PLOS Genetics: Widespread Shortening of 3' Untranslated Regions and Increased Exon Inclusion Are Evolutionarily Conserved...
... with systematic shifts towards increased cassette exon inclusion and shortening of Tandem 3' UTRs post-infection. These ... Negative values represent less inclusion, while positive values represent more inclusion, as defined by the schematic exon ... Widespread Shortening of 3' Untranslated Regions and Increased Exon Inclusion Are Evolutionarily Conserved Features of Innate ...
  http://journals.plos.org/plosgenetics/article/figure?id=10.1371/journal.pgen.1006338.g002
*  Molekularbiologische und funktionelle Charakterisierung neuer "Chicken Ig-like" Rezeptoren
... the last exon containing the ITIMs. The exon/intron boundaries conformed to the gt-ag rule and the exon phases were highly ... durch zwei Exons kodiert wurden, wobei beide ITIMs auf dem letzten Exon lagen. Außerdem folgten die Exon/Intronübergänge der gt ... jede Ig-Domäne durch ein separates Exons kodiert wurde, der transmembrane Bereich auf einem Exon lag und der lange ... Analysis of the genomic organisation showed, that the signalpeptide was split into two exons, each Ig-domain and the ...
  https://edoc.ub.uni-muenchen.de/1807/index.html
*  Introns and Exons again...
Is there any way of finding out where the intron/exon (exon-exon) boundaries are in a cDNA sequence? I am trying to design PCR ... Introns and Exons again.... Dr. N.A. Affara naffara at crc.ac.uk Wed Oct 7 10:19:36 EST 1992 *Previous message: Automated ... but not much about average length of introns and exons. Thanks very much if you have replied already! Phil (E-mail naffara at ...
  http://www.bio.net/bionet/mm/methods/1992-October/003147.html
*  exon within intron
... Shengxian Wang shen at CUBSPS.BIO.COLUMBIA.EDU Wed Feb 5 22:36:35 EST 1997 *Previous message: Fly feeding ... exon) resides in another gene's intron region. I heard of examples, but would like to have a few papers to look at. Could ...
  http://www.bio.net/bionet/mm/dros/1997-February/002731.html
*  galaxy-user] Constitutive exon workflow?
But how do I sort within genes? That is, how do I get the top 2 exons per gene (highest expressing exons per gene) and, if ... An additional nicety would be to somehow work in a preference for 5' exons. For example, let's say a gene has 3 exons and, with ... I'd like to selectively get the first 2 exons. I've started learning Galaxy and was able to import BED files for UCSC exons (as ... galaxy-user] Constitutive exon workflow? 7plusorminus 3 Mon, 10 Feb 2014 02:01:25 -0800 ...
  https://www.mail-archive.com/galaxy-user@lists.bx.psu.edu/msg05294.html
*  Exons Encode Enhancers | Science
Absence of an exon-encoded enhancer, however, did have functional consequences. Thus, exonic sequences may function in the ... In fact, in mice, roughly 7% of enhancer peaks overlapped coding exons. Mutation of these elements in zebrafish and mouse ... whether they are also found in exons, the coding regions of DNA, is unclear. Birnbaum et al. analyzed 25 mouse and human ... of the deleted gene but also alterations in the expression of genes that are regulated by enhancers in the deleted exons. ...
  http://science.sciencemag.org/content/336/6079/277.1
*  Affymetrix exon array - The Weizmann Wave
Affymetrix exon array. Tag archives for Affymetrix exon array. Don't Throw Out Those Introns. Posted by weizmann science writer ...
  http://scienceblogs.com/weizmann/tag/affymetrix-exon-array/
*  Nebraska Sen. Exon in Hospital - latimes
Exon's press secretary, said doctors at Bethesda Naval Hospital have ... J. James Exon (D-Neb.), 63, has been hospitalized after complaining of stomach pains, his office said today.Mark Bowen, ... Mark Bowen, Exon's press secretary, said doctors at Bethesda Naval Hospital have diagnosed the pains as "relating to the ... J. James Exon (D-Neb.), 63, has been hospitalized after complaining of stomach pains, his office said today. ...
  http://articles.latimes.com/1985-05-09/news/mn-6702_1_j-james-exon
*  Exon shuffling - Wikipedia
... or the same exon can be duplicated, to create a new exon-intron structure.[1] There are different mechanisms through which exon ... Exon shuffling is a molecular mechanism for the formation of new genes. It is a process through which two or more exons from ... In order for exon shuffling to start to play a major role in protein evolution the appearance of spliceosomal introns had to ... Exon shuffling follows certain splice frame rules. Introns can interrupt the reading frame of a gene by inserting a sequence ...
  https://en.m.wikipedia.org/wiki/Exon_shuffling
*  Affymetrix Exon Array Announcements
Human Exon 1.0 ST Array Sample Data Update *changed the chiptype setting in the CEL files from HuEx-1_0-st-v1 to HuEx-1_0-st-v2 ... January 15, 2006 Human Exon 1.0 ST Array Update Notes. Updated the design time annotations based on some improvements and bug ... This field is set with the transcript_cluster_id, not exon level probe set id. This change makes it easier to merge these ... These changes affect some of the transcript cluster and exon cluster IDs. They also affect transcript cluster groupings. New ...
  http://www.affymetrix.com/analysis/netaffx/exon/announcements.affx