Contig Mapping | Profiles RNS
"Contig Mapping" by people in this website by year, and whether "Contig Mapping" was a major or minor topic of these ... "Contig Mapping" is a descriptor in the National Library of Medicines controlled vocabulary thesaurus, MeSH (Medical Subject ... A 12-Mb complete coverage BAC contig map in human chromosome 16p13.1-p11.2. Genome Res. 1999 Aug; 9(8):763-74. ... Below are the most recent publications written about "Contig Mapping" by people in Profiles. ...
Rapid fine mapping of causative mutations from sets of unordered, contig-sized fragments of genome sequence - Projects -...
Rapid fine mapping of causative mutations from sets of unordered, contig-sized fragments of genome sequence. Ghanasyam ...
Several contigs hit the same species with viralComplete : which contigs should I use to map the reads with bowtie2?
You can have different contigs mapping to the same species hence, each of these contigs will contribute to the final coverage ... Could you please explain me how I should handle this contigs in order construct an index with bowtie2, to map the reads and ... Could you please explain me how I should handle this contigs in order construct an index with bowtie2, to map the reads and ... But after the analysis of the contigs yielded with viralverify and viralcomplete, I noticed that some contigs hit the same ...
Improved Assemblies Using a Source-Agnostic Pipeline for MetaGenomic Assembly by Merging (MeGAMerge) of Contigs | Scientific...
MeGAMerge contigs are supported by read mapping and contig alignment data, when using synthetically-derived and real ... MeGAMerge consistently outperforms individual assembly methods, producing larger contigs with an increased number of predicted ... These contigs are supported both by the contig mapping results as well as read mapping-based validation, which is discussed ... contigs above 10 kb in size), number of bases in the largest contigs (e.g. top 10, or 100 contigs), or number of contigs ...
Improved Assemblies Using a Source-Agnostic Pipeline for MetaGenomic Assembly by Merging (MeGAMerge) of Contigs | Scientific...
MeGAMerge contigs are supported by read mapping and contig alignment data, when using synthetically-derived and real ... MeGAMerge consistently outperforms individual assembly methods, producing larger contigs with an increased number of predicted ... These contigs are supported both by the contig mapping results as well as read mapping-based validation, which is discussed ... contigs above 10 kb in size), number of bases in the largest contigs (e.g. top 10, or 100 contigs), or number of contigs ...
HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps | Genome Biology | Full...
We develop HiCBin, a novel open-source pipeline, to resolve high-quality MAGs utilizing Hi-C contact maps. HiCBin employs the ... We then denote the contig signal as the number of Hi-C reads mapped to the contig. In the Hi-C experiment, shorter contigs with ... Contigs are assembled from the shotgun sequencing reads, and paired-end Hi-C reads are mapped to the assembled contigs to ... Generating Hi-C contact maps. Raw contig-contig interactions were aggregated as contacts by counting the number of alignments ...
A BAC contig map over the proximal ∼3.3 Mb region of horse chromosome 21<...
A BAC contig map over the proximal ∼3.3 Mb region of horse chromosome 21. Cytogenetic and Genome Research. 2008 May;120(1-2): ... A BAC contig map over the proximal ∼3.3 Mb region of horse chromosome 21. In: Cytogenetic and Genome Research. 2008 ; Vol. 120 ... A BAC contig map over the proximal ∼3.3 Mb region of horse chromosome 21. / Brinkmeyer-Langford, C.; Raudsepp, T.; Gustafson- ... Brinkmeyer-Langford, C., Raudsepp, T., Gustafson-Seabury, A., & Chowdhary, B. P. (2008). A BAC contig map over the proximal ∼ ...
A machine-learning approach to combined evidence validation of genome assemblies
Contig Mapping / methods* * Drosophila / genetics* * Molecular Sequence Data * Pattern Recognition, Automated / methods* ... Sophisticated computer algorithms (assemblers and scaffolders) merge these DNA fragments into contigs, and place these contigs ...
Generation and analysis of ESTs from the eastern oyster, Crassostrea virginica Gmelin and identification of microsatellite and...
Contig Mapping * DNA, Complementary / metabolism * Expressed Sequence Tags* * Gene Expression Profiling* * Gene Library ... Cluster analysis indicated the presence of 635 contigs and 4,053 singletons, generating a total of 4,688 unique sequences. ...
Contig - Wikipedia
Contigs therefore provide the framework for hierarchical sequencing. The assembly of a contig map involves several steps. First ... and a scaffold-consisting of contigs and gaps-that covers the map region is often the first result. The gaps between contigs ... Contig can also refer to the overlapping clones that form a physical map of a chromosome when the top-down or hierarchical ... If gaps between contigs remain after STS landmark mapping and restriction fingerprinting have been performed, the sequencing of ...
OMACC: an Optical-Map-Assisted Contig Connector for improving de novo genome assembly. - 指紋 - 國立成功大學
Human hg19 chr2:241,688,521-241,688,521 UCSC Genome Browser v457
Comparative Genomics of Vibrio cholerae from Haiti, Asia, and Africa - Volume 17, Number 11-November 2011 - Emerging Infectious...
Optical mapping also supported the contig ordering derived for 2010EL-1786. For all remaining isolates, Illumina-supplemented, ... were mapped to the Newbler contigs by using CLC Genomics Workbench version 4.5 (www.clcbio.com/index.php?id=1042) and yielded ... Newbler-assembled contigs were prepared as pseudogenomes by first linking contigs with a linker sequence containing stop codons ... Next-generation sequence average coverage and number of mapped reads for Vibrio cholerae isolates from Haiti, Asia, and Africa ...
Human hg19 chr9:109,691,619-109,691,619 UCSC Genome Browser v453
Publications at this Location : USDA ARS
ANCHORING 9371 MAIZE EST UNIGENES TO THE BAC CONTIG MAP BY TWO-DIMENSIONAL OVERGO HYBRIDIZATION (Peer Reviewed Journal) (16-Nov ... IBM NEIGHBORS: CONSENSUS GENETIC MAP FOR PHYSICAL MAP SCAFFOLDING (Abstract Only) (15-Nov-03) ... PHYSICAL BIN MAP OF EST ON WHEAT HOMOEOLOGOUS GROUP 4 CHROMOSOMES (Abstract Only) (15-Dec-03) ... AN INTEGRATED COMPREHENSIVE MAP OF THE MAIZE GENOME (Abstract Only) (10-Nov-03) ...
Williams Syndrome: Background, Pathophysiology, Etiology
A complete physical contig and partial transcript map of the Williams syndrome critical region. Genomics. 1999 Jun 1. 58(2):138 ... Delineation of 7q11.2 deletions associated with Williams-Beuren syndrome and mapping of a repetitive sequence to within and to ...
Bazzicalupo Marco | Scheda personale | Università degli Studi di Firenze | UniFI
Human hg19 chr2:25,383,722-25,391,559 UCSC Genome Browser v457
Human hg19 chr2:25,383,722-25,391,559 UCSC Genome Browser v454
Human hg19 chr2:25,383,722-25,391,559 UCSC Genome Browser v457
Frontiers | Development of a Sequence-Based Reference Physical Map of Pea (Pisum sativum L.)
The average contig size is 0.33 Mbp and the N50 contig size is 0.62 Mbp. WGPTM technology has proved to provide a robust ... The average contig size is 0.33 Mbp and the N50 contig size is 0.62 Mbp. WGPTM technology has proved to provide a robust ... Assembly of the BAC clones using the modified Fingerprinted Contigs (FPC) program has resulted in 13,040 contigs, consisting of ... Assembly of the BAC clones using the modified Fingerprinted Contigs (FPC) program has resulted in 13,040 contigs, consisting of ...
Human hg19 chr2:25,383,722-25,391,559 UCSC Genome Browser v454
Unique small RNA signatures uncovered in the tammar wallaby genome | BMC Genomics | Full Text
Mapping all miRNAs to the tammar genome and comparing target genes among tammar, mouse and human, we identified 163 conserved ... Using a combination of miRNA hairpin predictions and co-mapping with miRBase entries, we identified a highly conserved cluster ... ChIP-seq sequences were mapped against these contigs and each read was allowed to map to at most one location. While this ... LH performed the centromere contig mapping. NJ and SM performed the small RNA Northerns. MR and AP performed tammar pouch young ...
Analysis of BAC-end sequences in rainbow trout: Content characterization and assessment of synteny between trout and other fish...
Furthermore, comparative genomics through BES can be used for identifying positional candidate genes from QTL mapping studies, ... The numerous microsatellites will facilitate integration of the linkage and physical maps and serve as valuable resource for ... fine mapping QTL and positional cloning of genes affecting aquaculture production traits. ... The map contained 4,173 contigs and 9,379 singletons. The physical length of the map contigs was estimated to be approximately ...
The Corona Conspiracy, Part 19: Thomas Cowan and 'The Myth of Contagion', Frank Visser
MN985325.1). All the remaining contigs mapped to either host cell rRNA or mitochondria. We mapped the trimmed reads to the ... Furthermore, the scientists could separate human from viral RNA, because all the remaining contigs mapped to either host cell ... In bottom-up sequencing projects, a contig refers to overlapping sequence data (reads); in top-down sequencing projects, contig ... A contig (from contiguous) is a set of overlapping DNA segments that together represent a consensus region of DNA. ...
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GEO Accession viewer
Gennaro Fazio : USDA ARS
EST contig-based SSR linkage maps for Malus × domestica cv Royal Gala and an apple scab resistant accession of M. sieversii, ... EST contig-based SSR linkage maps for Malus × domestica cv Royal Gala and an apple scab resistant accession of M. sieversii, ... Confirmation By QTL mapping Of The Malus Robusta (Cv. Robusta 5) derived powdery mildew resistance gene Pl1-(Proceedings) ... Genome to phenome mapping in apple using historical data-(Peer Reviewed Journal) Migicovsky, Z., Gardner, K., Money, D., Sawler ...
PATCH v2 0/6] netfs, afs, ceph: Support folios, at least partially
... contig(mapping, start / PAGE_SIZE, - PAGEVEC_SIZE, pv.pages); - if (pv.nr == 0) - break; + _debug(kill %lx (to %lx), index, ... mapping, ==, mapping); + BUG_ON(xa_is_value(folio)); + ASSERTCMP(folio_file_mapping(folio), ==, mapping); - put_page(page); + ... mapping != mapping); + BUG_ON(folio_file_mapping(folio) != mapping); - if (!afs_dir_check_page(dvnode, page, req-,file_size ... mapping = vnode-,vfs_inode.i_mapping; - struct page *page; + struct folio *folio; pgoff_t end; XA_STATE(xas, &mapping-,i_pages ...
OpGen Prepping Optical Mapping System for Analysis of Human, Other Larger Genomes | GenomeWeb
Using OpGens MapSolver software, contigs generated by sequencers are mapped in silico "so that the contigs can be mapped back ... "The bottom line is that … we can help orient and align the contigs to our Optical Map scaffold thats been created," White said ... The Optical Mapping Technology was licensed from New York University and the University of Wisconsin, and OpGen has been ... For strain typing, an optical map of the isolate of interest can be generated in about 24 hours, compared to the days or weeks ...