"Contig Mapping" by people in this website by year, and whether "Contig Mapping" was a major or minor topic of these ... "Contig Mapping" is a descriptor in the National Library of Medicines controlled vocabulary thesaurus, MeSH (Medical Subject ... A 12-Mb complete coverage BAC contig map in human chromosome 16p13.1-p11.2. Genome Res. 1999 Aug; 9(8):763-74. ... Below are the most recent publications written about "Contig Mapping" by people in Profiles. ...
Rapid fine mapping of causative mutations from sets of unordered, contig-sized fragments of genome sequence. Ghanasyam ...
You can have different contigs mapping to the same species hence, each of these contigs will contribute to the final coverage ... Could you please explain me how I should handle this contigs in order construct an index with bowtie2, to map the reads and ... Could you please explain me how I should handle this contigs in order construct an index with bowtie2, to map the reads and ... But after the analysis of the contigs yielded with viralverify and viralcomplete, I noticed that some contigs hit the same ...
MeGAMerge contigs are supported by read mapping and contig alignment data, when using synthetically-derived and real ... MeGAMerge consistently outperforms individual assembly methods, producing larger contigs with an increased number of predicted ... These contigs are supported both by the contig mapping results as well as read mapping-based validation, which is discussed ... contigs above 10 kb in size), number of bases in the largest contigs (e.g. top 10, or 100 contigs), or number of contigs ...
MeGAMerge contigs are supported by read mapping and contig alignment data, when using synthetically-derived and real ... MeGAMerge consistently outperforms individual assembly methods, producing larger contigs with an increased number of predicted ... These contigs are supported both by the contig mapping results as well as read mapping-based validation, which is discussed ... contigs above 10 kb in size), number of bases in the largest contigs (e.g. top 10, or 100 contigs), or number of contigs ...
We develop HiCBin, a novel open-source pipeline, to resolve high-quality MAGs utilizing Hi-C contact maps. HiCBin employs the ... We then denote the contig signal as the number of Hi-C reads mapped to the contig. In the Hi-C experiment, shorter contigs with ... Contigs are assembled from the shotgun sequencing reads, and paired-end Hi-C reads are mapped to the assembled contigs to ... Generating Hi-C contact maps. Raw contig-contig interactions were aggregated as contacts by counting the number of alignments ...
A BAC contig map over the proximal ∼3.3 Mb region of horse chromosome 21. Cytogenetic and Genome Research. 2008 May;120(1-2): ... A BAC contig map over the proximal ∼3.3 Mb region of horse chromosome 21. In: Cytogenetic and Genome Research. 2008 ; Vol. 120 ... A BAC contig map over the proximal ∼3.3 Mb region of horse chromosome 21. / Brinkmeyer-Langford, C.; Raudsepp, T.; Gustafson- ... Brinkmeyer-Langford, C., Raudsepp, T., Gustafson-Seabury, A., & Chowdhary, B. P. (2008). A BAC contig map over the proximal ∼ ...
Contig Mapping / methods* * Drosophila / genetics* * Molecular Sequence Data * Pattern Recognition, Automated / methods* ... Sophisticated computer algorithms (assemblers and scaffolders) merge these DNA fragments into contigs, and place these contigs ...
Contig Mapping * DNA, Complementary / metabolism * Expressed Sequence Tags* * Gene Expression Profiling* * Gene Library ... Cluster analysis indicated the presence of 635 contigs and 4,053 singletons, generating a total of 4,688 unique sequences. ...
Contigs therefore provide the framework for hierarchical sequencing. The assembly of a contig map involves several steps. First ... and a scaffold-consisting of contigs and gaps-that covers the map region is often the first result. The gaps between contigs ... Contig can also refer to the overlapping clones that form a physical map of a chromosome when the top-down or hierarchical ... If gaps between contigs remain after STS landmark mapping and restriction fingerprinting have been performed, the sequencing of ...
深入研究「OMACC: an Optical-Map-Assisted Contig Connector for improving de novo genome assembly.」主題。共同形成了獨特的指紋。 ... OMACC: an Optical-Map-Assisted Contig Connector for improving de novo genome assembly.. ...
GRC Map Contigs. hide. dense. full. Hg18 Diff. hide. dense. squish. pack. full. Hg38 Diff. hide. dense. squish. pack. full. Hi ... IKMC Genes Mapped. hide. dense. squish. pack. full. lincRNAs. hide. show. LRG Transcripts. hide. dense. squish. pack. full. MGC ...
Optical mapping also supported the contig ordering derived for 2010EL-1786. For all remaining isolates, Illumina-supplemented, ... were mapped to the Newbler contigs by using CLC Genomics Workbench version 4.5 (www.clcbio.com/index.php?id=1042) and yielded ... Newbler-assembled contigs were prepared as pseudogenomes by first linking contigs with a linker sequence containing stop codons ... Next-generation sequence average coverage and number of mapped reads for Vibrio cholerae isolates from Haiti, Asia, and Africa ...
GRC Map Contigs. hide. dense. full. Hg18 Diff. hide. dense. squish. pack. full. Hg38 Diff. hide. dense. squish. pack. full. Hi ... IKMC Genes Mapped. hide. dense. squish. pack. full. lincRNAs. hide. show. LRG Transcripts. hide. dense. squish. pack. full. MGC ...
ANCHORING 9371 MAIZE EST UNIGENES TO THE BAC CONTIG MAP BY TWO-DIMENSIONAL OVERGO HYBRIDIZATION (Peer Reviewed Journal) (16-Nov ... IBM NEIGHBORS: CONSENSUS GENETIC MAP FOR PHYSICAL MAP SCAFFOLDING (Abstract Only) (15-Nov-03) ... PHYSICAL BIN MAP OF EST ON WHEAT HOMOEOLOGOUS GROUP 4 CHROMOSOMES (Abstract Only) (15-Dec-03) ... AN INTEGRATED COMPREHENSIVE MAP OF THE MAIZE GENOME (Abstract Only) (10-Nov-03) ...
A complete physical contig and partial transcript map of the Williams syndrome critical region. Genomics. 1999 Jun 1. 58(2):138 ... Delineation of 7q11.2 deletions associated with Williams-Beuren syndrome and mapping of a repetitive sequence to within and to ...
M.Galardini; A.Mengoni; M.Bazzicalupo (2015). Mapping Contigs Using CONTIGuator. In: A.Mengoni, M.Galardini,M.Fondi. Bacterial ...
GRC Map Contigs. hide. dense. full. Hg18 Diff. hide. dense. squish. pack. full. Hg38 Diff. hide. dense. squish. pack. full. Hi ... IKMC Genes Mapped. hide. dense. squish. pack. full. lincRNAs. hide. show. LRG Transcripts. hide. dense. squish. pack. full. MGC ...
GRC Map Contigs. hide. dense. full. Hg18 Diff. hide. dense. squish. pack. full. Hg38 Diff. hide. dense. squish. pack. full. Hi ... IKMC Genes Mapped. hide. dense. squish. pack. full. lincRNAs. hide. show. LRG Transcripts. hide. dense. squish. pack. full. MGC ...
GRC Map Contigs. hide. dense. full. Hg18 Diff. hide. dense. squish. pack. full. Hg38 Diff. hide. dense. squish. pack. full. Hi ... IKMC Genes Mapped. hide. dense. squish. pack. full. lincRNAs. hide. show. LRG Transcripts. hide. dense. squish. pack. full. MGC ...
The average contig size is 0.33 Mbp and the N50 contig size is 0.62 Mbp. WGPTM technology has proved to provide a robust ... The average contig size is 0.33 Mbp and the N50 contig size is 0.62 Mbp. WGPTM technology has proved to provide a robust ... Assembly of the BAC clones using the modified Fingerprinted Contigs (FPC) program has resulted in 13,040 contigs, consisting of ... Assembly of the BAC clones using the modified Fingerprinted Contigs (FPC) program has resulted in 13,040 contigs, consisting of ...
GRC Map Contigs. hide. dense. full. Hg18 Diff. hide. dense. squish. pack. full. Hg38 Diff. hide. dense. squish. pack. full. Hi ... IKMC Genes Mapped. hide. dense. squish. pack. full. lincRNAs. hide. show. LRG Transcripts. hide. dense. squish. pack. full. MGC ...
Mapping all miRNAs to the tammar genome and comparing target genes among tammar, mouse and human, we identified 163 conserved ... Using a combination of miRNA hairpin predictions and co-mapping with miRBase entries, we identified a highly conserved cluster ... ChIP-seq sequences were mapped against these contigs and each read was allowed to map to at most one location. While this ... LH performed the centromere contig mapping. NJ and SM performed the small RNA Northerns. MR and AP performed tammar pouch young ...
Furthermore, comparative genomics through BES can be used for identifying positional candidate genes from QTL mapping studies, ... The numerous microsatellites will facilitate integration of the linkage and physical maps and serve as valuable resource for ... fine mapping QTL and positional cloning of genes affecting aquaculture production traits. ... The map contained 4,173 contigs and 9,379 singletons. The physical length of the map contigs was estimated to be approximately ...
MN985325.1). All the remaining contigs mapped to either host cell rRNA or mitochondria. We mapped the trimmed reads to the ... Furthermore, the scientists could separate human from viral RNA, because all the remaining contigs mapped to either host cell ... In bottom-up sequencing projects, a contig refers to overlapping sequence data (reads); in top-down sequencing projects, contig ... A contig (from contiguous) is a set of overlapping DNA segments that together represent a consensus region of DNA. ...
... contig mapping) from a clonal library. The theory behind the ODS program for contig mapping can be found in: Cuticchia, A.J ... 1992b). ODS: Ordering DNA Sequences, a physical mapping algorithm based on simulated annealing. CABIOS, in press Any published ...
Reads mapping to the mitochondria, unmapped contigs and chromosome Y were removed and not considered.. We used MACS2 to call ... Adapter sequences were trimmed from FASTQs using custom python scripts to enable mapping fragments with sequences containing ...
EST contig-based SSR linkage maps for Malus × domestica cv Royal Gala and an apple scab resistant accession of M. sieversii, ... EST contig-based SSR linkage maps for Malus × domestica cv Royal Gala and an apple scab resistant accession of M. sieversii, ... Confirmation By QTL mapping Of The Malus Robusta (Cv. Robusta 5) derived powdery mildew resistance gene Pl1-(Proceedings) ... Genome to phenome mapping in apple using historical data-(Peer Reviewed Journal) Migicovsky, Z., Gardner, K., Money, D., Sawler ...
... contig(mapping, start / PAGE_SIZE, - PAGEVEC_SIZE, pv.pages); - if (pv.nr == 0) - break; + _debug(kill %lx (to %lx), index, ... mapping, ==, mapping); + BUG_ON(xa_is_value(folio)); + ASSERTCMP(folio_file_mapping(folio), ==, mapping); - put_page(page); + ... mapping != mapping); + BUG_ON(folio_file_mapping(folio) != mapping); - if (!afs_dir_check_page(dvnode, page, req-,file_size ... mapping = vnode-,vfs_inode.i_mapping; - struct page *page; + struct folio *folio; pgoff_t end; XA_STATE(xas, &mapping-,i_pages ...
Using OpGens MapSolver software, contigs generated by sequencers are mapped in silico "so that the contigs can be mapped back ... "The bottom line is that … we can help orient and align the contigs to our Optical Map scaffold thats been created," White said ... The Optical Mapping Technology was licensed from New York University and the University of Wisconsin, and OpGen has been ... For strain typing, an optical map of the isolate of interest can be generated in about 24 hours, compared to the days or weeks ...