Biological and Environmental Systems | Argonne National Laboratory
He is also associate division director of the Institute of Genomics and Systems Biology. He trained as a computer scientists ... Folker Meyer is a computational biologist at Argonne National Laboratory and a senior fellow at the Computation Institute at ...http://www.anl.gov/photos/biological-and-environmental-systems
SeqGSEA - Gene Set Enrichment Analysis of RNA-Seq Data | RNA-Seq Blog
Postdoctoral Training Fellow - Computational Biology. *SIDR - simultaneous isolation and parallel sequencing of genomic DNA and ... RNA-Seq answers long-standing question in evolutionary biology. September 6, 2011 ...http://www.rna-seqblog.com/seqgsea-gene-set-enrichment-analysis-of-rna-seq-data/
Berlin School of Mind and Brain: Faculty
Professor in Theoretical Biology & Chair of Sonderforschungsbereich 618. Research area. Theoretical and evolutionary biology, ... Computational models of basal ganglia - cortex interaction (cooperation with Bernstein Centre for Computational Neuroscience, ... Computational neuroscience, machine learning, analysis of neural data. Description. Current research areas are: models of ... Theoretical and systems biology, nonlinear dynamics; animal vocalization, signal transduction. Description. My group is ...http://www.mind-and-brain.de/people/faculty/
The DAWGPAWS pipeline for the annotation of genes and transposable elements in plant genomes | Plant Methods | Full Text
Computational Biology. Edited by: Gascuel O, Sagot M-F. 2001, 111-125.View ArticleGoogle Scholar. ... Feschotte C, Pritham EJ: Computational analysis and paleogenomics of interspersed repeats in eukaryotes. Computational Genomics ... Tropical Plant Biology. 2008, 1: 85-96.View ArticleGoogle Scholar. *. Bao Z, Eddy SR: Automated de novo identification of ... Stein L: Genome annotation: from sequence to biology. Nat Rev Genet. 2001, 2: 493-503.View ArticlePubMedGoogle Scholar. ...https://plantmethods.biomedcentral.com/articles/10.1186/1746-4811-5-8
Overview of the Department's Research and Teaching | Department of Computer Science
Computational molecular biology: (Farach-Colton. Muthukrishnan). *Computational learning theory and theory of neural networks ... 529 Computational Geometry. 538 Complexity of Computation. 539 Theory of Computation. 540 Combinatorial Methods in Complexity ... Computational geometry: (Kalantari, Steiger, Szemerédi). *Complexity theory: (Allender, Fredman, Kilian, Saks, Szegedy, ... 521 Computational Methods for Optimization Problems. 522 Network and Discrete Optimization Algorithms. 525 Advanced Numerical ...https://www.cs.rutgers.edu/graduate/overview-departments-research-and-teaching
Cancer systems biology - Wikipedia
Computational Systems Biology of Cancer. Chapman & Hall/CRC Mathematical & Computational Biology. p. 461. ISBN 978-1439831441. ... Systems biology List of systems biology research groups Bioconductor Wang, Edwin. Cancer Systems Biology. Chapman & Hall, 2010 ... Cancer systems biology approaches, therefore, are based on the use of computational and mathematical methods to decipher the ... Cancer systems biology encompasses the application of systems biology approaches to cancer research, in order to study the ...https://en.wikipedia.org/wiki/Cancer_systems_biology
Genome survey sequence - Wikipedia
In the fields of bioinformatics and computational biology, Genome Survey Sequences (GSS) are nucleotide sequences similar to ... "ReRep: Computational detection of repetitive sequences in genome survey sequences (GSS)." Bmc Bioinformatics 9.1 (2008): 366. ... "ReRep: Computational detection of repetitive sequences in genome survey sequences (GSS)." Bmc Bioinformatics 9.1 (2008): 366. ... Cardelli M (2011). "Alu PCR". Methods Mol Bio. 687: 221-9. doi:10.1007/978-1-60761-944-4_15. PMID 20967611. Tsugeki R, Olson ML ...https://en.wikipedia.org/wiki/Genome_survey_sequence
Sam Beck, Ph.D., Joins MDI Biological Laboratory Faculty in Computational Biology - MDI Biological Laboratory
Beck uses computational biology and bioinformatics to understand the biology of aging, as well as the biology of cancer stem ... His interest in computational biology was also inspired by life experience - specifically, a need to do more with less. When he ... HomeNewsPress ReleasesSam Beck, Ph.D., Joins MDI Biological Laboratory Faculty in Computational Biology ... Sam Beck, Ph.D., Joins MDI Biological Laboratory Faculty in Computational Biology. Research Will Focus on Progeria, Which ...https://mdibl.org/press-release/sam-beck-ph-d-joins-mdi-biological-laboratory-in-computational-biology/
A primer on learning in Bayesian networks for computational biology - White Rose Research Online
1 more author) (2007) A primer on learning in Bayesian networks for computational biology. PLoS Computational Biology, 3 (8). ... The University of Leeds , Faculty of Biological Sciences (Leeds) , School of Molecular and Cellular Biology (Leeds). ...http://eprints.whiterose.ac.uk/7942/
List of awards in bioinformatics and computational biology - Wikipedia
The following is a list of awards in the fields of bioinformatics and computational biology. ASBMB DeLano Award for ... "members of the computational biology community who are more than 12 to 15 years post-degree and have made major contributions ... to the field of computational biology through research, education, service, or a combination of the three" SIB Young ... Computational Biosciences - "to a scientist for the most accessible and innovative development or application of computer ...https://en.wikipedia.org/wiki/List_of_awards_in_bioinformatics_and_computational_biology
IEEE/ACM Transactions on Computational Biology and Bioinformatics - Wikipedia
"IEEE Transactions on Computational Biology and Bioinformatics". IEEE/ACM Transactions on Computational Biology and ... "Introduction to the IEEE/ACM Transactions on Computational Biology and Bioinformatics". IEEE Transactions on Computational ... and computational methods used in bioinformatics and computational biology development and testing of effective computer ... IEEE/ACM Transactions on Computational Biology and Bioinformatics (abbreviated TCBB) is a bimonthly peer-reviewed scientific ...https://en.wikipedia.org/wiki/IEEE/ACM_Transactions_on_Computational_Biology_and_Bioinformatics
PLOS Computational Biology: Modeling Networks of Coupled Enzymatic Reactions Using the Total Quasi-Steady State Approximation
Author SummaryThe physiological responses of a cell to its environment are controlled by gene-protein interaction networks of great complexity. To understand how information is processed in these networks requires accurate mathematical models of the dynamical behavior of large sets of coupled chemical reactions. To avoid producing large and hardly manageable models, such reaction networks are often simplified using phenomenological reaction rate laws, such as the Michaelis-Menten rate law for an enzyme-catalyzed reaction. We show that, in regulatory networks where proteins swap places as enzymes and substrates, such simplifications must be carried out with care, keeping track of enzyme-substrate complexes. The risk is to provide a simplified description of the molecular networks that at best is correct for the long-term behavior but fails to represent the short-term dynamics of the real network. To avoid such a possibility, we suggest using an alternative approach called the total quasi-steady statehttp://journals.plos.org/ploscompbiol/article/related?id=10.1371/journal.pcbi.0030045&imageURI=info:doi/10.1371/journal.pcbi.0030045.t001
PLOS Computational Biology: Estimating the Respective Contributions of Human and Viral Genetic Variation to HIV Control
Author Summary Viral loads of Human Immunodeficiency Virus infections are correlated between the donor and the recipient of the transmission pair. Similarly, human genetic factors may modulate viral load. In this study we estimate the extents to which viral load is heritable either via the viral genotype (from donor to recipient) or via the host's Human Leukocyte Antigen (HLA) genotype. We find that a major fraction of inter individual variability is explained by the similarity of the viral genotypes, and that human genetic variation in the HLA region provide little additional explanatory power.http://journals.plos.org/ploscompbiol/article/authors?id=10.1371/journal.pcbi.1005339
PLOS Computational Biology: Differential temperature sensitivity of synaptic and firing processes in a neural mass model of...
This study uses a computational approach to identify and investigate possible mechanisms. First, we used a neural mass model to ...http://journals.plos.org/ploscompbiol/article/figure?id=10.1371/journal.pcbi.1005736.g004
Computational-biology] Call for Applications: HPC Application of R and Other Code for Biological Applications, a NIMBioS...
40net.bio.net (by ccrawley from nimbios.org). Mon Feb 14 13:24:34 EST 2011 *Previous message: [Computational-biology] Extended ... Next message: [Computational-biology] Bioinformatics for gene expression analysis * Messages sorted by: [ date ] [ thread ] [ ... Next message: [Computational-biology] Bioinformatics for gene expression analysis * Messages sorted by: [ date ] [ thread ] [ ... Computational-biology] Call for Applications: HPC Application of R and Other Code for Biological Applications, a NIMBioS ...http://www.bio.net/bionet/mm/comp-bio/2011-February/004090.html
PLOS Computational Biology: Joint Modelling of Confounding Factors and Prominent Genetic Regulators Provides Increased Accuracy...
Author Summary The computational analysis of genetical genomics studies is challenged by confounding variation that is ...http://journals.plos.org/ploscompbiol/article/comments?id=10.1371/journal.pcbi.1002330
PLOS Computational Biology: Identifying Drug Effects via Pathway Alterations using an Integer Linear Programming Optimization...
Author Summary Cells are complex functional units. Signal transduction refers to the underlying mechanism that regulates cell function, and it is usually depicted on signaling pathways maps. Each cell type has distinct signaling transduction mechanisms, and several diseases arise from alterations on the signaling pathways. Small-molecule inhibitors have emerged as novel pharmaceutical interventions that aim to block certain pathways in an effort to reverse the abnormal phenotype of the diseased cells. Despite that compounds have been well designed to hit certain molecules (i.e., targets), little is known on how they act on anhttp://journals.plos.org/ploscompbiol/article/authors?id=10.1371/journal.pcbi.1000591
PLOS Computational Biology: PPARα siRNA-Treated Expression Profiles Uncover the Causal Sufficiency Network for Compound-Induced...
... and computational reasoning to unveil regulatory causal relationships and the sufficiency network of identified genes for ... as the growing symbiosis with computational sciences becomes more widely appreciated. In fact, the combination of various new ...http://journals.plos.org/ploscompbiol/article/comments?id=10.1371/journal.pcbi.0030030
Joint CMU-Pitt Ph.D. Program in Computational Biology and Department of Computational and Systems Biology Seminar | Carnegie...
Joint CMU-Pitt Ph.D. Program in Computational Biology and Department of Computational and Systems Biology Seminar. Friday, ...https://www.cs.cmu.edu/calendar/fri-2017-04-14-1100/joint-cmu-pitt-phd-program-computational-biology-and-department-computational-and-systems-biology-seminar
New research projects to enhance bioinformatics and computational biology tools and met... ( This press release is available...
... computational,biology,tools,and,methodologies,biological,biology news articles,biology news today,latest biology news,current ... Through Genome Canada's 2012 Bioinformatics and Computational Biology ...,New,research,projects,to,enhance,bioinformatics,and, ... Biology NewsMedicine NewsBiology ProductsMedicine ProductsBiology DefinitionMedicine DefinitionBiology TechnologyMedicine ... Computational biology helps make sense of genomics data through computational analysis, modelling, and prediction. "Managing ...http://www.bio-medicine.org/biology-news-1/New-research-projects-to-enhance-bioinformatics-and-computational-biology-tools-and-methodologies-30067-1/
PLOS Computational Biology: Expression-Guided In Silico Evaluation of Candidate Cis Regulatory Codes for Drosophila Muscle...
Thus, there is a need for computational methods that can evaluate hypothesized cis regulatory codes before the difficult task ... We have developed a novel computational framework (termed ... PLOS Computational Biology * Browse * Current Issue * Journal ...http://journals.plos.org/ploscompbiol/article/metrics?id=10.1371/journal.pcbi.0020053
Meta-Analysis | Epidemiological Studies | Epidemiology & Computational Biology | Capabilities | Health Sciences | Health &...
Meta-analysis is a formal quantitative method for pooling scientific data reported from multiple studies, therefore allowing for an evaluation of the treatment or exposure effect on a specific health outcome. In a meta-analysis, researchers assess heterogeneity across studies, examine subgroups of studies to determine if selected subsets of the research data provide similar or different results, and calculate summary relative risk estimates. A meta-analysis provides a statistically precise summary risk estimate, as well as a better understanding of the consistency of reported findings (or lack of) in the research literature. A meta-analysis is distinct from a qualitative or narrative review in that a meta-analysis involves a systematic review of the literature, relevant data extraction, and quantitative analyses of data across multiple studies. A pooled analysis is similar to a traditional meta-analysis, except that participant-level data from multiple studies are combined and analyzed as a ...https://www.exponent.com/services/practices/environmental-sciences/health-sciences/capabilities/epidemiology--computational-biology/epidemiological-studies/metaanalysis
Journal Club Computational Biology • Algorithmic Bioinformatics (ABI) • Department of Mathematics and Computer Science
Journal Club Computational Biology. In this seminar we will present original work in Computational biology as well as progress ...http://www.mi.fu-berlin.de/en/inf/groups/abi/teaching/lectures/lectures_past/SS2013/S_journal_club/index.html
Joint CMU-Pitt Ph.D. Program in Computational Biology - Wikipedia
The Department of Computational Biology (DCB) at the University of Pittsburgh and the Computational Biology Department at ... Vries Chair of the Department of Computational Biology at Pitt, and Dr. Robert F. Murphy, Director of the Computational Biology ... The Joint CMU-Pitt Ph.D Program in Computational Biology (CPCB) is an interdisciplinary graduate training program in ... Program in Computational Biology HHMI-NBIB Interfaces Initiative. ...https://en.wikipedia.org/wiki/Joint_CMU-Pitt_Ph.D._Program_in_Computational_Biology
Tri-Institutional Training Program in Computational Biology and Medicine - Wikipedia
The Tri-Institutional Training Program in Computational Biology and Medicine or Tri-I CBM is a PhD program that exists as a ... "Students train in computational biology, medicine in TIRP collaboration". Cornell Chronicle. 2003. Retrieved 2007-07-25. Tri- ... The focus of study is on the various forms of mathematical and computational modeling of biological systems, particularly as ...https://en.wikipedia.org/wiki/Tri-Institutional_Training_Program_in_Computational_Biology_and_Medicine