HMMcopy: A package for bias-free copy number estimation and robust CNA detection in tumour samples from WGS HTS data - PDF
Comparative genomic hybridization Because arrays are more than just a tool for expression analysis Microarray Data Analysis ... DTU 2008 Comparative genomic hybridization Because arrays are more than just a tool for expression analysis Carsten Friis ( ... GAIA: Genomic Analysis of Important Aberrations GAIA: Genomic Analysis of Important Aberrations Sandro Morganella Stefano Maria ... The Database of Genomic Variants User Tutorial Updated, June 2013 The Database of Genomic Variants User Tutorial http://dgv. ...http://docplayer.net/217365-Hmmcopy-a-package-for-bias-free-copy-number-estimation-and-robust-cna-detection-in-tumour-samples-from-wgs-hts-data.html
family-based trio sequencing | Beyond the Ion Channel
... can be reliably assessed using array comparative genomic hybridization (array CGH) or Single Nucleotide Polymorphism (SNP) ... Between both technologies, there is a grey zone of structural genomic variants that are difficult to detect; CNVs smaller than ... Grey zone. Structural genomic variants or copy number variations (CNV) ...http://epilepsygenetics.net/tag/family-based-trio-sequencing/
High resolution copy number analysis of IRF4 translocation-positive diffuse large B-cell and follicular lymphomas - Zurich...
Here, we performed array-comparative genomic hybridization and molecular inversion probe microarray analyses on DNA from 12 ... Here, we performed array-comparative genomic hybridization and molecular inversion probe microarray analyses on DNA from 12 ...http://www.zora.uzh.ch/id/eprint/76318/
Inferring Tumor Progression from Genomic Heterogeneity
... and profiling genomes using comparative genomic hybridization. Breast carcinomas display two classes of genomic structural ... We therefore developed a method to quantify genomic copy number in single cells using next-generation sequencing. This method, ... SPP involves macro-dissecting tumors, flow-sorting genomic subpopulations by DNA content, ...https://dspace.sunyconnect.suny.edu/handle/1951/55561
Recurrent mutations at codon 625 of the splicing factor SF3B1 in uveal melanoma.
Comparative Genomic Hybridization. DNA Copy Number Variations / genetics. Humans. Kaplan-Meier Estimate. Melanoma / genetics*. ... 24646085 - Genetic, genomic and epigenetic studies as tools for elucidating disease pathogenesis i.... 11571555 - Acid-sensing ... ion channel (asic) 4 gene: physical mapping, genomic organisation, and eva.... 24247645 - Analysis of filaggrin mutations and ...http://www.biomedsearch.com/nih/Recurrent-mutations-at-codon-625/23313955.html
Wiley: Advanced Techniques in Diagnostic Cellular Pathology - Mary Hannon-Fletcher, Perry Maxwell
5 Microarray-based Comparative Genomic Hybridization 135. David S.P. Tan, Rachael Natrajan and Jorge S. Reis-Filho ... 6 Tissue In Situ Hybridization 163. Anthony O' Grady, John O' Loughlin and Hilary Magee ...http://www.wiley.com/WileyCDA/WileyTitle/productCd-0470745029.html
Publications | Pollack Lab | Stanford Medicine
Comparative genomic hybridization on mouse cDNA microarrays and its application to a murine lymphoma model. Oncogene. 2005 Sep ... Comparative genomic hybridization using cDNA microarrays.. in DNA Microarrays: A Molecular Cloning Manual, ed. D. Bowtell and J ... Array-based comparative genomic hybridization identifies localized DNA amplifications and homozygous deletions in pancreatic ... Integrative genomic and functional profiling of the pancreatic cancer genome.. BMC Genomics. 2013 Sep 16;14(1):624.. PubMed. ...http://med.stanford.edu/pollacklab/publications.html
Large-scale polymorphism of heterochromatic repeats in the DNA of Arabidopsis thaliana | BMC Plant Biology | Full Text
Comparative Genomic Hybridization (CGH) microarray results. Comparative Genomic Hybridization (CGH) microarray results. ... Comparative genomic hybridization results of Loh-0 and Col-0 did not support contiguous variation in copy number of protein- ... Comparative genomic hybridization. The Operon 26,000 oligo set was used to print microarrays in the Fred Hutchinson Cancer ... Comparative genomic hybridization of the Col-0 and Loh-0 accessions displayed CNV, but the observed variation could not account ...https://bmcplantbiol.biomedcentral.com/articles/10.1186/1471-2229-7-44
Strictly co-isogenic C57BL/6J-Prnp−/− mice: A rigorous resource for prion science | JEM
array comparative genomic hybridization. BMDM. BM-derived macrophage. CDS. protein-coding DNA sequence. CNV. copy number ... We then performed high-density array comparative genomic hybridization (aCGH). This analysis showed the presence of a relative ... Array comparative genome hybridization. gDNA was extracted from mouse tissue using QIAamp DNA mini kit (QIAGEN) and 1 µg of ... S1 B). This could reflect either a genomic loss in the PrnpZH3/ZH3 mouse or a genomic gain in the C57BL/6J mouse. Copy number ...http://jem.rupress.org/content/early/2016/02/23/jem.20151610
Expression of the progenitor marker NG2/CSPG4 predicts poor survival and resistance to ionising radiation in glioblastoma.
Array comparative genomic hybridization Comparative genomic hybridization was used to determine the gene copy number in high ... Array comparative genomic hybridisation (CGH) performed on a subset of the GBM biopsies confirmed multiple genetic aberrations ... c Simultaneous fluorescent immunostaining of NG2 (red) and fluorescent in situ hybridisation for EGFR (orange) and centromere 7 ... The slides were hybridized at 37°C for 36 h in a humidified hybridisation chamber, followed by incubation with anti-NG2 (WB ...http://www.biomedsearch.com/nih/Expression-progenitor-marker-predicts-poor/21863242.html
Children's Mercy Kansas City - Genetics
Microarray comparative genomic hybridization. *Molecular (DNA) studies. Commonly Treated Conditions. *Abnormal newborn state ...https://www.childrensmercy.org/genetics/
The diagnostic and prognostic value of genetic aberrations in resectable distal bile duct cancer
Chapter 7 Genomic survey of distal bile duct carcinoma by comparative genomic hybridization and karyotype analysis. ...http://dare.uva.nl/search?metis.record.id=155490
Androgen-Regulated and Highly Tumorigenic Human Prostate Cancer Cell Line Established from a Transplantable Primary CWR22 Tumor...
Comparative genomic hybridization. Total genomic DNA was extracted from primary CWR22 tumor tissues, CWR22Pc cells from two ... using Wizard Genomic DNA Purification Kit (Promega). Comparative genomic hybridization analysis was done using standard ... C, the comparative genomic hybridization analysis shows gains at 1q, 7, 8p, and 12, and losses of chromosomes 2 and X in both ... Comparative genomic hybridization analysis of adrenocortical tumors of childhood. J Clin Endocrinol Metab 1999;84:1116-21. ...http://clincancerres.aacrjournals.org/content/14/19/6062.long
Loss of Heterozygosity of Chromosome 3 Detected with Single Nucleotide Polymorphisms Is Superior to Monosomy 3 for Predicting...
SNP was compared with fluorescence in situ hybridization (FISH) and array-based comparative genomic hybridization (aCGH) for ... Comparative genomic hybridization in the detection of DNA copy number abnormalities in uveal melanoma. Cancer Res 1994;54:4764- ... Ghazvini S, Char DH, Kroll S, Waldman FM, Pinkel D. Comparative genomic hybridization analysis of archival formalin-fixed ... Microarray comparative genomic hybridisation analysis of intraocular uveal melanomas identifies distinctive imbalances ...http://clincancerres.aacrjournals.org/content/13/10/2923?ijkey=9272e7b4baf892f049508fa4fe43fc3e8b7cf8f6&keytype2=tf_ipsecsha
Lack of chromosomal imbalances in adamantinomatous and papillary craniopharyngiomas | Journal of Neurology, Neurosurgery &...
Comparative genomic hybridization in pineal parenchymal tumors. Genes Chromosomes Cancer2001;30:99-104. ... Minimal sizes of deletions detected by comparative genomic hybridization. Genes Chromosomes Cancer1998;21:172-5. ... Rickert CH, Paulus W. No chromosomal imbalances detected by comparative genomic hybridisation in subependymal giant cell ... Analysis of pilocytic astrocytoma by comparative genomic hybridization. Br J Cancer2000;82:1218-22. ...http://jnnp.bmj.com/content/74/2/260
Promoting Bifidobacteria in the Human Infant Intestine: Why,... : Journal of Pediatric Gastroenterology and Nutrition
infantis as revealed by comparative genomic hybridization. Appl Environ Microb 2010; 76:7373-7381.. * Cited Here... ... Bifidobacterium population analysis in the infant gut by direct mapping of genomic hybridization patterns: potential for ... Both of the articles featured this month quantified biofidobacteria abundance using fluorescence in situ hybridization (FISH), ... Quantification of bacterial groups within the human fecal flora by oligonucleotide probe hybridisation. Appl Environ Microbiol ...https://journals.lww.com/jpgn/Fulltext/2011/06000/Promoting_Bifidobacteria_in_the_Human_Infant.3.aspx
Jonathan Pollack | Stanford Medicine Profiles
By array-based comparative genomic hybridization, we identified recurrent genomic DNA gains and losses, as well as high-level ... To explore disease heterogeneity at the genomic level, we carried out array-based comparative genomic hybridization (array CGH ... Comparative genomic hybridization on spotted oligonucleotide microarrays. Methods in molecular biology (Clifton, N.J.) Kim, Y. ... Comparative genomic hybridization on mouse cDNA microarrays and its application to a murine lymphoma model ONCOGENE Sander, S ...https://med.stanford.edu/profiles/jonathan-pollack
Comparative Analyses of Chromosome Alterations in Soft-Tissue Metastases within and across Patients with Castration-Resistant...
Array comparative genomic hybridization analysis of genomic alterations in breast cancer subtypes. Cancer Res 2004; 64: 8541-9. ... we characterize the profound degree of genomic alteration found in CR tumors using array comparative genomic hybridization ( ... Array comparative genomic hybridization analysis. The bacterial artificial chromosome (BAC) clones that make up the array, ... Genetic changes in primary and recurrent prostate cancer by comparative genomic hybridization. Cancer Res 1995; 55: 342-7. ...http://cancerres.aacrjournals.org/content/69/19/7793
Array-based comparative genomic hybridization. BAC clones included in the "1 Mb array" platform were recently described ( 7). ... A systematic protocol was used to analyze array-based comparative genomic hybridization (aCGH) data for copy number alterations ... Cancer cell lines as genetic models of their parent histology: analyses based on array comparative genomic hybridization. ... let-7i DNA copy number does not exhibit genomic alteration in human cancer. Genomic locus harboring let-7i did not exhibit ...http://cancerres.aacrjournals.org/content/68/24/10307
GENE.00021 Chromosomal Microarray Analysis (CMA) for Developmental Delay, Autism Spectrum Disorder, Intellectual Disability ...
Microarray-based Comparative Genomic Hybridization (aCGH) aCGH comparative genomic hybridization compares the genomes of two ... Array comparative genomic hybridization (aCGH). Chromosomal microarray analysis (CMA). Comparative genomic hybridization (CGH) ... and comparative genomic hybridization (CGH) arrays. Comparative Genomic Hybridization (CGH): A molecular technique that is used ... Microarray comparative genomic hybridization in prenatal diagnosis: a review. Ultrasound Obstet Gynecol. 2012; 40(4):385-391. ...https://www.unicare.com/medicalpolicies/policies/mp_pw_c139365.htm
Head and Neck Pathology | ARUP Laboratories
FFPE ARRAY, array CGH; aCGH; Array Comparative Genomic Hybridization; Chromosomal Microarray; CMA; CGH; Microarray; Single- ... Epstein-Barr Virus (EBV) by in situ Hybridization, Paraffin Epstein-Barr Virus (EBV), Nasopharyngeal carcinoma, NK/ T-cell ... Human Papillomavirus (HPV) High Risk In Situ Hybridization, Paraffin Gynecologic Cancer, ISH ...http://www.aruplab.com/ap/tests/head-and-neck
Comparative genomic hybridization array. DNA extraction, labeling, and hybridization conditions together with software used for ... analysis of comparative genomic hybridization array data in our series and in those of others did not reveal loss of the PTEN ... we did not identify any alterations involving the PIK3CA gene by comparative genomic hybridization array (data not shown). Thus ... as assessed by comparative genomic hybridization array analysis, although this event was documented previously in various human ...http://clincancerres.aacrjournals.org/content/14/21/6761
CMAMT - Overview: Chromosomal Microarray, Autopsy/Products of Conception/Stillbirth, Tissue
Array Comparative Genomic Hybridization. Oligonucleotide Array. Oligo Array. Single Nucleotide Polymorphism (SNP) Array. Whole ...https://www.mayomedicallaboratories.com/test-catalog/Overview/62667
Genome wide single cell analysis of chemotherapy resistant metastatic cells in a case of gastroesophageal adenocarcinoma |...
To identify genomic aberrations, array comparative genomic hybridization (CGH) was performed using a 1 Mb resolution genomic ... Array comparative genomic hybridization reveals distinct DNA copy number differences between gastrointestinal stromal tumors ... we report the successful genome wide analysis using array comparative genomic hybridization (CGH) of DNA from only fourteen ... Genomic microarrays were provided by the Norwegian Microarray Consortium at the national technology platform financed by the ...https://rd.springer.com/article/10.1186/1471-2407-11-455
The Y chromosome of the Okinawa spiny rat,Tokudaia muenninki, was rescued through fusion with an autosome | SpringerLink
Comparative genomic hybridization analysis was unable to detect sex-specific regions in the sex chromosomes because both sex ... we performed comparative genomic hybridization (CGH) analysis. When this provided limited information, we then conducted ... d, e) Mapping of T. muenninki chromosomes by FISH using mouse genomic DNA clones of the 18S-28S rRNA genes. Hybridization ... The genomic DNA for the probes was also extracted from one male and one female. The male and female genomic DNA probes were ...https://link.springer.com/article/10.1007%2Fs10577-011-9268-6
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