family-based trio sequencing | Beyond the Ion Channel
... can be reliably assessed using array comparative genomic hybridization (array CGH) or Single Nucleotide Polymorphism (SNP) ... Between both technologies, there is a grey zone of structural genomic variants that are difficult to detect; CNVs smaller than ... Grey zone. Structural genomic variants or copy number variations (CNV) ...http://epilepsygenetics.net/tag/family-based-trio-sequencing/
High resolution copy number analysis of IRF4 translocation-positive diffuse large B-cell and follicular lymphomas - Zurich...
Here, we performed array-comparative genomic hybridization and molecular inversion probe microarray analyses on DNA from 12 ... Here, we performed array-comparative genomic hybridization and molecular inversion probe microarray analyses on DNA from 12 ...http://www.zora.uzh.ch/id/eprint/76318/
Inferring Tumor Progression from Genomic Heterogeneity
... and profiling genomes using comparative genomic hybridization. Breast carcinomas display two classes of genomic structural ... We therefore developed a method to quantify genomic copy number in single cells using next-generation sequencing. This method, ... SPP involves macro-dissecting tumors, flow-sorting genomic subpopulations by DNA content, ...https://dspace.sunyconnect.suny.edu/handle/1951/55561
High-Resolution Genomic Profiling of Carboplatin Resistance in Early-Stage Epithelial Ovarian Carcinoma
Array-based comparative genomic hybridization (CGH) was used to identify genetic alterations in 32 early-stage epithelial ... Array-based comparative genomic hybridization (CGH) was used to identify genetic alterations in 32 early-stage epithelial ... Array-based comparative genomic hybridization (CGH) was used to identify genetic alterations in 32 early-stage epithelial ... Platinum resistance, Ovarian cancer, Chemotherapy resistance, Carboplatin, Array CGH, Array comparative genomic hybridization. ...https://lup.lub.lu.se/search/publication/1461719
NIOSHTIC-2 Publications Search - 20033660 - Genetic changes as biomarkers of mouse lung adenocarcinoma: comparison to human.
We used Spectral Karyotyping (SKY), mapping with fluorescently labeled genomic clones (FISH), comparative genomic hybridization ... We used Spectral Karyotyping (SKY), mapping with fluorescently labeled genomic clones (FISH), comparative genomic hybridization ...https://www.cdc.gov/niosh/nioshtic-2/20033660.html
Copy number analysis - Wikipedia
... comparative genomic hybridization and with high-resolution array-based tests based on array comparative genomic hybridization ( ... Array comparative genomic hybridization Bioinformatics DNA microarray Virtual Karyotype Sebat, J.; et al. (2007). "Strong ... Bassem A. Bejjani and Lisa G. Shaffer (2006). "Application of Array-Based Comparative Genomic Hybridization to Clinical ... Copy number variation can be detected with various types of tests such as fluorescent in situ hybridization, ...https://en.wikipedia.org/wiki/Copy_number_analysis
3q29 microdeletion syndrome - Wikipedia
12 year-old male patient with a de novo chromosome 3q29 microdeletion identified by BAC array comparative genomic hybridization ...https://en.wikipedia.org/wiki/3q29_microdeletion_syndrome
Genotype-Dependent Efficacy of a Dual PI3K/mTOR Inhibitor, NVP-BEZ235, and an mTOR Inhibitor, RAD001, in Endometrial Carcinomas
Array comparative genomic hybridization (CGH) was performed using arrays of 2464 BAC clones (HumArray2.0) in the remaining 5 ... Single nucleotide polymorphism typing array and array comparative genomic hybridization. A single nucleotide polymorphism (SNP ... Integrated genomic profiling of endometrial carcinoma associates aggressive tumors with indicators of PI3 kinase activation. ...http://pubmedcentralcanada.ca/pmcc/articles/PMC3360787/?lang=en-ca
Search of: 'Kidney cancer' - List Results - ClinicalTrials.gov
Genetic: comparative genomic hybridization. *(and 10 more...). Interventional. Phase 2. *Abramson Cancer Center of the ...https://clinicaltrials.gov/ct2/results?cond=%22Kidney+cancer%22
Search of: 'Brain tumor childhood' - List Results - ClinicalTrials.gov
Genetic: comparative genomic hybridization. *Genetic: cytogenetic analysis. *Genetic: fluorescence in situ hybridization ...https://clinicaltrials.gov/ct2/results?cond=%22Brain+tumor+childhood%22&show_rss=Y&sel_rss=mod14
Search of: Recruiting, Not yet recruiting, Available Studies | 'Lung Neoplasms' - List Results - ClinicalTrials.gov
Genetic: comparative genomic hybridization. *Genetic: gene expression microarray analysis. *Genetic: proteomic profiling ...https://clinicaltrials.gov/ct2/results?recr=Open&cond=%22Lung+Neoplasms%22&show_flds=Y
Search of: Thoracentesis | Recruiting, Not yet recruiting, Available Studies | ( Map: United States ) | NIH, U.S. Fed - List...
Genetic: comparative genomic hybridization. *Genetic: gene expression microarray analysis. *Genetic: proteomic profiling ...https://clinicaltrials.gov/ct2/results?term=Thoracentesis&recrs=abc&fund=01&map_cntry=US
Search of: Thoracentesis | Recruiting, Not yet recruiting, Available Studies | NIH, U.S. Fed - List Results - ClinicalTrials.gov
Genetic: comparative genomic hybridization. *Genetic: gene expression microarray analysis. *Genetic: proteomic profiling ...https://clinicaltrials.gov/ct2/results?fund=0&fund=1&recr=Open&term=Thoracentesis
Sanger Institute - Publications 2003 - Wellcome Trust Sanger Institute
DNA microarrays for comparative genomic hybridization based on DOP-PCR amplification of BAC and PAC clones.. Fiegler H, Carr P ... Indeed, it is increasingly difficult to perform any genomic analysis that is not comparative. This should, however, not be seen ... Ensembl 2002: accommodating comparative genomics.. Clamp M, Andrews D, Barker D, Bevan P, Cameron G, Chen Y, Clark L, Cox T, ... The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics.. Stein LD, Bao Z, Blasiar D, Blumenthal T ...http://www.sanger.ac.uk/research/publications/2003.html
'cytogenetic analysis' Protocols and Video...
Array Comparative Genomic Hybridization (Array CGH) for Detection of Genomic Copy Number Variants', 'A High-throughput ... Fluorescent in situ Hybridization on Mitotic Chromosomes of Mosquitoes', 'Utilizing Murine Inducible Telomerase Alleles in the ... High-throughput Physical Mapping of Chromosomes using Automated in situ Hybridization', 'Rapid Analysis of Chromosome ... Studies of Tissue Degeneration/Regeneration and Cancer', 'Quick Fluorescent In Situ Hybridization Protocol for Xist RNA ...https://www.jove.com/keyword/cytogenetic+analysis
SH3D21 - Wikipedia
"Array comparative genomic hybridization in male infertility". Human Reproduction. 27 (3): 921-9. doi:10.1093/humrep/der440. ...https://en.wikipedia.org/wiki/SH3D21
Recurrent mutations at codon 625 of the splicing factor SF3B1 in uveal melanoma.
Comparative Genomic Hybridization. DNA Copy Number Variations / genetics. Humans. Kaplan-Meier Estimate. Melanoma / genetics*. ... 24646085 - Genetic, genomic and epigenetic studies as tools for elucidating disease pathogenesis i.... 11571555 - Acid-sensing ... ion channel (asic) 4 gene: physical mapping, genomic organisation, and eva.... 24247645 - Analysis of filaggrin mutations and ...http://www.biomedsearch.com/nih/Recurrent-mutations-at-codon-625/23313955.html
Intraocular (Uveal) Melanoma Treatment (PDQ®): Treatment - Health Professional Information [NCI] | UW Health ...
Comparative genomic hybridization.. *Loss of heterozygosity using DNA polymorphism analysis (e.g., single nucleotide ...https://www.uwhealth.org/health/topic/nci/intraocular-uveal-melanoma-treatment-pdq-treatment-health-professional-information-nci/ncicdr0000062916.html
Wiley: Advanced Techniques in Diagnostic Cellular Pathology - Mary Hannon-Fletcher, Perry Maxwell
5 Microarray-based Comparative Genomic Hybridization 135. David S.P. Tan, Rachael Natrajan and Jorge S. Reis-Filho ... 6 Tissue In Situ Hybridization 163. Anthony O' Grady, John O' Loughlin and Hilary Magee ...http://www.wiley.com/WileyCDA/WileyTitle/productCd-0470745029.html
Publications | Pollack Lab | Stanford Medicine
Comparative genomic hybridization on mouse cDNA microarrays and its application to a murine lymphoma model. Oncogene. 2005 Sep ... Comparative genomic hybridization using cDNA microarrays.. in DNA Microarrays: A Molecular Cloning Manual, ed. D. Bowtell and J ... Array-based comparative genomic hybridization identifies localized DNA amplifications and homozygous deletions in pancreatic ... Integrative genomic and functional profiling of the pancreatic cancer genome.. BMC Genomics. 2013 Sep 16;14(1):624.. PubMed. ...http://med.stanford.edu/pollacklab/publications.html
Large-scale polymorphism of heterochromatic repeats in the DNA of Arabidopsis thaliana | BMC Plant Biology | Full Text
Comparative Genomic Hybridization (CGH) microarray results. Comparative Genomic Hybridization (CGH) microarray results. ... Comparative genomic hybridization results of Loh-0 and Col-0 did not support contiguous variation in copy number of protein- ... Comparative genomic hybridization. The Operon 26,000 oligo set was used to print microarrays in the Fred Hutchinson Cancer ... Comparative genomic hybridization of the Col-0 and Loh-0 accessions displayed CNV, but the observed variation could not account ...https://bmcplantbiol.biomedcentral.com/articles/10.1186/1471-2229-7-44
Strictly co-isogenic C57BL/6J-Prnp−/− mice: A rigorous resource for prion science | JEM
array comparative genomic hybridization. BMDM. BM-derived macrophage. CDS. protein-coding DNA sequence. CNV. copy number ... We then performed high-density array comparative genomic hybridization (aCGH). This analysis showed the presence of a relative ... Array comparative genome hybridization. gDNA was extracted from mouse tissue using QIAamp DNA mini kit (QIAGEN) and 1 µg of ... S1 B). This could reflect either a genomic loss in the PrnpZH3/ZH3 mouse or a genomic gain in the C57BL/6J mouse. Copy number ...http://jem.rupress.org/content/early/2016/02/23/jem.20151610
Expression of the progenitor marker NG2/CSPG4 predicts poor survival and resistance to ionising radiation in glioblastoma.
Array comparative genomic hybridization Comparative genomic hybridization was used to determine the gene copy number in high ... Array comparative genomic hybridisation (CGH) performed on a subset of the GBM biopsies confirmed multiple genetic aberrations ... c Simultaneous fluorescent immunostaining of NG2 (red) and fluorescent in situ hybridisation for EGFR (orange) and centromere 7 ... The slides were hybridized at 37°C for 36 h in a humidified hybridisation chamber, followed by incubation with anti-NG2 (WB ...http://www.biomedsearch.com/nih/Expression-progenitor-marker-predicts-poor/21863242.html
Children's Mercy Kansas City - Genetics
Microarray comparative genomic hybridization. *Molecular (DNA) studies. Commonly Treated Conditions. *Abnormal newborn state ...https://www.childrensmercy.org/genetics/
Together with the molecular data from p53, hepatitis B virus integration and comparative genomic hybridization profiles, tumor ... 3 The abbreviations used are: HCC, hepatocellular carcinoma; HBV, hepatitis B virus; CGH, comparative genomic hybridization; ... Detection and mapping of amplified DNA sequences in breast cancer by comparative genomic hybridization. Proc. Natl. Acad. Sci. ... and genetic alteration examined by comparative genomic hybridization were compared. Results indicated that gene expression ...http://cancerres.aacrjournals.org/content/62/16/4711