Prediction of Carbohydrate-Binding Proteins from Sequences Using Support Vector Machines
The sequences of carbohydrate-binding protein sequences were collected from UniProtKB  by using a sequence retrieval system ... The sequence homology search was applied to these sequence clusters as follows.(1)For clusters consisting of a single sequence ... sequence the query sequence is predicted as a carbohydrate-binding (noncarbohydrate-binding) protein. The AUC value for this ... we regarded a protein sequence as that of a carbohydrate-binding protein (positive) if it had a sequence identity higher than ...https://www.hindawi.com/journals/abi/2010/289301/
Carbohydrate-binding sequences of the lectin genes in leguminous plants from the Galegeae and Hedysareae Tribes, Russian...
"Carbohydrate-binding sequences of the lectin genes in leguminous plants from the Galegeae and Hedysareae Tribes, Russian ... Carbohydrate-binding sequences of the lectin genes in leguminous plants from the Galegeae and Hedysareae Tribes. Carbohydrate- ... Carbohydrate-binding sequences of the lectin genes in leguminous plants from the Galegeae and Hedysareae Tribes. Chubukova, O. ... The carbohydrate-binding sequences (CBS) of the lectin genes from legume plants of the genera Astragalus Lam., Oxytropis DC., ...https://www.deepdyve.com/lp/springer_journal/carbohydrate-binding-sequences-of-the-lectin-genes-in-leguminous-INp2BVq6Vk
Congruent Strategies for Carbohydrate Sequencing. 3. OSCAR: An Algorithm for Assigning Oligosaccharide Topology from MS n ...
Congruent Strategies for Carbohydrate Sequencing. 3. OSCAR: An Algorithm for Assigning Oligosaccharide Topology from MS n Data ...https://www.infona.pl/resource/bwmeta1.element.acs-doi-10_1021_ac050726j
Amino acid sequence similarities of carbohydrate active | Open-i
Amino acid sequence similarities of carbohydrate active enzymes identified from the muskoxen rumen metatranscriptome (using all ... pone-0020521-g005: Amino acid sequence similarities of carbohydrate active enzymes identified from the muskoxen rumen ... pone-0020521-g005: Amino acid sequence similarities of carbohydrate active enzymes identified from the muskoxen rumen ... Polyadenylated RNA (mRNA) was sequenced on the Illumina Genome Analyzer II system and 2.8 gigabases of sequences were obtained ...https://openi.nlm.nih.gov/detailedresult.php?img=PMC3105075_pone.0020521.g005&req=4
LACTOBACILLUS ACIDOPHILUS NUCLEIC ACID SEQUENCES ENCODING CARBOHYDRATE UTILIZATION-RELATED PROTEINS AND USES THEREFOR - Patent...
0076]Carbohydrate utilization-related nucleotide sequences identified based on their sequence identity to the carbohydrate ... As used herein, "5' leader sequence," "translation leader sequence," or "5' non-coding sequence" refer to that DNA sequence ... sequence identity to the corresponding sequence may be used. Given the coding-strand sequence encoding a carbohydrate ... Sequence Identity The carbohydrate utilization-related and multidrug transporter sequences are members of families of ...http://www.patentsencyclopedia.com/app/20090093021
Variation of Neisseria gonorrhoeae lipooligosaccharide directs dendritic cell-induced T helper responses.
A naturally occurring variation of the terminal carbohydrates on the lipooligosaccharide (LOS) molecule correlates with altered ... Carbohydrate Sequence. Cells, Cultured. Cricetinae. Cricetulus. Dendritic Cells / immunology*. Female. Glycosylation. Humans. ... The carbohydrate moiety of GC LOS is subject to phase variation, creating a GC population with different terminal carbohydrate ... Molecular Sequence Data. Neisseria gonorrhoeae / immunology*. Phenotype. T-Lymphocytes, Helper-Inducer / immunology*. ...http://www.biomedsearch.com/nih/Variation-Neisseria-gonorrhoeae-lipooligosaccharide-directs/19834553.html
In vitro biosynthesis of glycosylphosphatidylinositol in Aspergillus fumigatus.
Carbohydrate Sequence. Coenzyme A / metabolism. Ethanolamines / metabolism. Ethylmaleimide / chemistry. Glycolipids / ... Molecular Sequence Data. Oligopeptides / chemistry. Phosphatidylinositols / biosynthesis, chemistry. Uridine Diphosphate N- ...http://www.biomedsearch.com/nih/In-vitro-biosynthesis-glycosylphosphatidylinositol-in/15568819.html
Tissue and developmental specificity of a polysialo-ganglioside species in the amphibian Xenopus.
Carbohydrate Sequence. Chick Embryo. Embryo, Nonmammalian / chemistry. G(M1) Ganglioside / analysis. Gangliosides / chemistry, ... Molecular Sequence Data. Oleic Acid / analysis. Organ Specificity. Palmitic Acid / analysis. Species Specificity. Spinal Cord ...http://www.biomedsearch.com/nih/Tissue-developmental-specificity-polysialo-ganglioside/8969459.html
Synthesis of carbohydrate derivatives using solid-phase work-up and scavenging techniques.
Carbohydrate Sequence. Combinatorial Chemistry Techniques / methods*. Glycosides / chemistry. Glycosylation. Iodine / chemistry ...http://www.biomedsearch.com/nih/Synthesis-carbohydrate-derivatives-using-solid/12945889.html
Identification of a locus involved in meningococcal lipopolysaccharide biosynthesis by deletion mutagenesis.
Base Sequence. Carbohydrate Sequence. Cloning, Molecular. DNA Primers. Glycosyltransferases / genetics. Lipopolysaccharides / ... Molecular Sequence Data. Neisseria meningitidis / genetics*, metabolism. Sequence Deletion. Transformation, Bacterial. Chemical ...http://www.biomedsearch.com/nih/Identification-locus-involved-in-meningococcal/8830268.html
Inhibitory effect of 2'-O-glycosyl isovitexin and alpha-tocopherol on genotoxic glyoxal formation in a lipid peroxidation...
Carbohydrate Sequence. Flavonoids / chemistry*, isolation & purification. Glyoxal / analysis, chemistry*. Hydrogen Peroxide. ...http://www.biomedsearch.com/nih/Inhibitory-effect-2-O-glycosyl/7959459.html
Comparison of Jurkat cell rolling velocities on various | Open-i
Carbohydrate Sequence. *E-Selectin/physiology. *Glycosylation. *Humans. *Jurkat Cells. *Ligands. *Molecular Sequence Data ...https://openi.nlm.nih.gov/detailedresult.php?img=PMC2195654_JEM982276.f3&req=4
A sub-population of keratan sulphates derived from bovine articular cartilage is capped with alpha(2-6)-linked N...
Animals ; Carbohydrate Conformation ; Carbohydrate Sequence ; Cartilage, Articular ; Cattle ; Chromatography, Affinity ; ... Keratan Sulfate ; Lectins ; Magnetic Resonance Spectroscopy ; Molecular Sequence Data ; N-Acetylneuraminic Acid ; Plant Lectins ...http://eprints.lancs.ac.uk/22860/
Glycoinformatics | Springer for Research & Development
This book provides current glycoinformatics methods and protocols used to support the determination of carbohydrate structures ... in biological samples as well as carbohydrate structure databases, the in ... and analyzing carbohydrate 'sequences' and their taxonomy using computers. Written in the highly successful Methods in ... Branched structures Carbohydrate structure databases Carbohydrates Glycan data Glycobiology Glycolipids Glycoproteins Protein- ...https://rd.springer.com/book/10.1007/978-1-4939-2343-4
glycosciences.de - About GLYCOSCIENCES.de
LINUCS: linear notation for unique description of carbohydrate sequences. Carbohydr Res 2001, 336:1-11. ... pdb-care (PDB carbohydrate residue check): a program to support annotation of complex carbohydrate structures in PDB files. BMC ... Carbohydrate Structure Suite (CSS): analysis of carbohydrate 3D structures derived from the PDB. Nucleic Acids Res 2005, 33: ... Sharing of worldwide distributed carbohydrate-related digital resources: online connection of the Bacterial Carbohydrate ...http://glycosciences.de/about.php
KAKEN - Research Projects | Functional roles of glycans for interaction between cytokines and receptors (KAKENHI-PROJECT...
Many cytokines recognize unique carbohydrate sequences of various glycoconjugates. Although their functional roles mostly ... Book] Carbohydrate recognition by cytokines and its relevance to their physiological activities.2007. *. Author(s). Yamashita, ... Book] Carbohydrate recognition by cytokines and its relevance to their physiological activities.2006. *. Author(s). Yamashita, ... Journal Article] The carbohydrate recognition by cytokines modulates their physiological activities.2004. *. Author(s). ...https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-14082208/
"Functional characterization of Ost3p. Loss of the 34-kD subunit of the" by Denise Karaoglu, Daniel J. Kelleher et al.
Amino Acid Sequence; Base Sequence; Carbohydrate Sequence; Crosses, Genetic; Endoplasmic Reticulum; Genes, Fungal; Genomic ... Library; Glycosylation; *Hexosyltransferases; Membrane Glycoproteins; *Membrane Proteins; Molecular Sequence Data; Mutagenesis ...https://escholarship.umassmed.edu/oapubs/947/
Transferrin: Iron Metabolism | SpringerLink
Jamieson, G. A., Jett, M., and DeBernardo, S., The carbohydrate sequence of the glycopeptide chains of human transferrin, J. ... Sutton, M. R., MacGillivray, R. T., and Brew, K., The amino acid sequences of three cystine-free cyanogen-bromide fragments of ... Dorland, L., Haverkamp, J., Schut, B. L., and Vliegenthart, J. F., The structure of the asialo-carbohydrate units of human ...https://link.springer.com/chapter/10.1007/978-1-4684-3584-9_7
Cell Recognition Molecule L1 Regulates Cell Surface Glycosylation to Modulate Cell Survival and Migration
The Lex carbohydrate sequence is recognized by antibody to L5, a functional antigen in early neural development. J Neurochem. ... Kucherer A, Faissner A, Schachner M. The novel carbohydrate epitope L3 is shared by some neural cell adhesion molecules. J Cell ... Isolation and biochemical characterization of a neural proteoglycan expressing the L5 carbohydrate epitope. J Neurochem. 1990; ... Two monoclonal antibodies recognizing carbohydrate epitopes on neural adhesion molecules interfere with cell interactions. Eur ...http://www.medsci.org/v14p1276.htm
Association of peptic ulcer with increased expression of Lewis antigens but not cagA, iceA, andvacA in Helicobacter pylori...
Carbohydrate sequence specificity of the mouse monoclonal antibodies that recognize crossreacting antigens on LOS and human ... Typing ofvacA for signal sequence region alleles and middle region alleles was carried out using the primers and methods as ...https://gut.bmj.com/content/47/1/18
DiVA - Sökresultat
Discrimination of epimeric glycans and glycopeptides using IM-MS and its potential for carbohydrate sequencing2014Ingår i: ... Solid-phase NMR spectroscopy was used to monitor the reactions for which a new pulse sequence was developed. The second method ... Empirical force fields for computer simulations of carbohydrates are often implicitly assumed to be valid also at temperatures ... Assembling and Unraveling Carbohydrates Structures: Conformational analysis of synthesized branched oligosaccharides2016 ...http://www.diva-portal.org/smash/resultList.jsf?dswid=-6003&af=%5B%22hasFulltext%3Atrue%22%5D&p=1&fs=true&language=sv&searchType=SIMPLE&query=&aq=%5B%5B%7B%22organisationId%22%3A%22631%22%7D%5D%5D&aq2=%5B%5B%5D%5D&aqe=%5B%5D&noOfRows=50&sortOrder=author_sort_asc&sortOrder2=title_sort_asc&onlyFullText=false&sf=all
Monoclonal Antibodies to Human Neuroblastoma Cells and Other Solid Tumors | SpringerLink
Rauvala, H., and Finne, J., 1979, Structural similarity of the terminal carbohydrate sequences of glycoproteins and glycolipids ...https://link.springer.com/chapter/10.1007/978-1-4684-4673-9_9
DiVA - Sökresultat
Discrimination of epimeric glycans and glycopeptides using IM-MS and its potential for carbohydrate sequencing2014Ingår i: ... The target molecules were readily synthesized from chiral carbohydrate starting materials. Highly potent inhibitors were ... The target molecules were readily synthesized from chiral carbohydrate starting materials, furnishing the inhibitor compounds ... demonstrating that this technique may prove useful for the sequencing of complex oligosaccharides. ...http://www.diva-portal.org/smash/resultList.jsf?dswid=-6003&p=151&fs=false&language=sv&searchType=SIMPLE&query=&af=%5B%5D&aq=%5B%5B%7B%22organisationId%22%3A%22631%22%7D%5D%5D&aq2=%5B%5B%5D%5D&aqe=%5B%5D&noOfRows=50&sortOrder=author_sort_asc&sortOrder2=title_sort_asc&onlyFullText=false&sf=all
Human Metabolome Database: Showing metabocard for Ganglioside GM2 (d18:0/20:0) (HMDB0011900)
The numbered subscripts 1, 2 and 3 refer to the carbohydrate sequence that is attached to the ceramide. In particular, 1 stands ... The carbohydrate portion of the ganglioside GM1 is the site of attachment of cholera toxin, the protein secreted by Vibrio ... NeuNAc, an acetylated derivative of the carbohydrate sialic acid, makes the head groups of Gangliosides anionic. NB: the M in ... Beta-1,3-N-acetylglucosaminyltransferase that plays a key role in the synthesis of lacto- or neolacto-series carbohydrate ...http://www.hmdb.ca/metabolites/HMDB11900
Human Metabolome Database: Showing metabocard for Ganglioside GM1 (18:1/12:0) (HMDB0004853)
The numbered subscripts 1, 2 and 3 refer to the carbohydrate sequence that is attached to the ceramide. In particular, 1 stands ... 3-GlcNAc-sequences found in terminal carbohydrate groups of glycoproteins and glycolipids. It may be involved in the ... The carbohydrate portion of the ganglioside GM1 is the site of attachment of cholera toxin, the protein secreted by Vibrio ... It may be responsible for the synthesis of the sequence NeuAc-alpha-2,3-Gal-beta-1,3-GalNAc- found on sugar chains O-linked to ...http://www.hmdb.ca/metabolites/HMDB04853