A species of gram-negative bacteria and nitrogen innoculant of PHASEOLUS VULGARIS.
A genus of gram-negative, aerobic, rod-shaped bacteria that activate PLANT ROOT NODULATION in leguminous plants. Members of this genus are nitrogen-fixing and common soil inhabitants.
A species of gram-negative, aerobic bacteria that is found in soil and which causes formation of root nodules on some, but not all, types of field pea, lentil, kidney bean, and clover.
A plant genus in the family FABACEAE which is the source of edible beans and the lectin PHYTOHEMAGGLUTININS.
The process in certain BACTERIA; FUNGI; and CYANOBACTERIA converting free atmospheric NITROGEN to biologically usable forms of nitrogen, such as AMMONIA; NITRATES; and amino compounds.
The large family of plants characterized by pods. Some are edible and some cause LATHYRISM or FAVISM and other forms of poisoning. Other species yield useful materials like gums from ACACIA and various LECTINS like PHYTOHEMAGGLUTININS from PHASEOLUS. Many of them harbor NITROGEN FIXATION bacteria on their roots. Many but not all species of "beans" belong to this family.
The relationship between two different species of organisms that are interdependent; each gains benefits from the other or a relationship between different species where both of the organisms in question benefit from the presence of the other.
Plants whose roots, leaves, seeds, bark, or other constituent parts possess therapeutic, tonic, purgative, curative or other pharmacologic attributes, when administered to man or animals.
A species of gram-negative, aerobic bacteria that causes formation of root nodules on some, but not all, types of sweet clover, MEDICAGO SATIVA, and fenugreek.
A biotin-dependent enzyme belonging to the ligase family that catalyzes the addition of CARBON DIOXIDE to pyruvate. It is occurs in both plants and animals. Deficiency of this enzyme causes severe psychomotor retardation and ACIDOSIS, LACTIC in infants. EC 6.4.1.1.
A species of gram-negative bacteria and an nitrogen inoculum that displays a high intrinsic tolerance to acidity.
The functional hereditary units of BACTERIA.
Knobbed structures formed from and attached to plant roots, especially of LEGUMES, which result from symbiotic infection by nitrogen fixing bacteria such as RHIZOBIUM or FRANKIA. Root nodules are structures related to MYCORRHIZAE formed by symbiotic associations with fungi.
A genus of gram-negative, aerobic, nonsporeforming rods which usually contain granules of poly-beta-hydroxybutyrate. (From Bergey's Manual of Determinative Bacteriology, 9th ed)
Proteins found in any species of bacterium.
Descriptions of specific amino acid, carbohydrate, or nucleotide sequences which have appeared in the published literature and/or are deposited in and maintained by databanks such as GENBANK, European Molecular Biology Laboratory (EMBL), National Biomedical Research Foundation (NBRF), or other sequence repositories.
Any of the processes by which cytoplasmic or intercellular factors influence the differential control of gene action in bacteria.
The usually underground portions of a plant that serve as support, store food, and through which water and mineral nutrients enter the plant. (From American Heritage Dictionary, 1982; Concise Dictionary of Biology, 1990)
Deoxyribonucleic acid that makes up the genetic material of bacteria.
Extrachromosomal, usually CIRCULAR DNA molecules that are self-replicating and transferable from one organism to another. They are found in a variety of bacterial, archaeal, fungal, algal, and plant species. They are used in GENETIC ENGINEERING as CLONING VECTORS.
A family of gram-negative bacteria which are saprophytes, symbionts, or plant pathogens.
An enzyme system that catalyzes the fixing of nitrogen in soil bacteria and blue-green algae (CYANOBACTERIA). EC 1.18.6.1.
Lipid A is the biologically active component of lipopolysaccharides. It shows strong endotoxic activity and exhibits immunogenic properties.
Fucose is a deoxyhexose sugar, specifically a L-configuration 6-deoxygalactose, often found as a component of complex carbohydrates called glycans in various glycoproteins and glycolipids within the human body.
The sequence of PURINES and PYRIMIDINES in nucleic acids and polynucleotides. It is also called nucleotide sequence.
A DNA-directed RNA polymerase found in BACTERIA. It is a holoenzyme that consists of multiple subunits including sigma factor 54.
Salts and esters of hydroxybutyric acid.
A plant species of the family FABACEAE widely cultivated for ANIMAL FEED.
A dicarboxylic acid ketone that is an important metabolic intermediate of the CITRIC ACID CYCLE. It can be converted to ASPARTIC ACID by ASPARTATE TRANSAMINASE.
The formation of a nitrogen-fixing cell mass on PLANT ROOTS following symbiotic infection by nitrogen-fixing bacteria such as RHIZOBIUM or FRANKIA.
A multistage process that includes cloning, physical mapping, subcloning, determination of the DNA SEQUENCE, and information analysis.
The lipopolysaccharide-protein somatic antigens, usually from gram-negative bacteria, important in the serological classification of enteric bacilli. The O-specific chains determine the specificity of the O antigens of a given serotype. O antigens are the immunodominant part of the lipopolysaccharide molecule in the intact bacterial cell. (From Singleton & Sainsbury, Dictionary of Microbiology and Molecular Biology, 2d ed)
The sequence of carbohydrates within POLYSACCHARIDES; GLYCOPROTEINS; and GLYCOLIPIDS.
The order of amino acids as they occur in a polypeptide chain. This is referred to as the primary structure of proteins. It is of fundamental importance in determining PROTEIN CONFORMATION.
Any detectable and heritable change in the genetic material that causes a change in the GENOTYPE and which is transmitted to daughter cells and to succeeding generations.
The relationships of groups of organisms as reflected by their genetic makeup.
The genetic complement of a BACTERIA as represented in its DNA.
Discrete segments of DNA which can excise and reintegrate to another site in the genome. Most are inactive, i.e., have not been found to exist outside the integrated state. DNA transposable elements include bacterial IS (insertion sequence) elements, Tn elements, the maize controlling elements Ac and Ds, Drosophila P, gypsy, and pogo elements, the human Tigger elements and the Tc and mariner elements which are found throughout the animal kingdom.
A parasexual process in BACTERIA; ALGAE; FUNGI; and ciliate EUKARYOTA for achieving exchange of chromosome material during fusion of two cells. In bacteria, this is a uni-directional transfer of genetic material; in protozoa it is a bi-directional exchange. In algae and fungi, it is a form of sexual reproduction, with the union of male and female gametes.
A test used to determine whether or not complementation (compensation in the form of dominance) will occur in a cell with a given mutant phenotype when another mutant genome, encoding the same mutant phenotype, is introduced into that cell.
A water-soluble, enzyme co-factor present in minute amounts in every living cell. It occurs mainly bound to proteins or polypeptides and is abundant in liver, kidney, pancreas, yeast, and milk.

Genetic locus and structural characterization of the biochemical defect in the O-antigenic polysaccharide of the symbiotically deficient Rhizobium etli mutant, CE166. Replacement of N-acetylquinovosamine with its hexosyl-4-ulose precursor. (1/77)

The O-antigen polysaccharide (OPS) of Rhizobium etli CE3 lipopolysaccharide (LPS) is linked to the core oligosaccharide via an N-acetylquinovosaminosyl (QuiNAc) residue. A mutant of CE3, CE166, produces LPS with reduced amounts of OPS, and a suppressed mutant, CE166 alpha, produces LPS with nearly normal OPS levels. Both mutants are deficient in QuiNAc production. Characterization of OPS from CE166 and CE166 alpha showed that QuiNAc was replaced by its 4-keto derivative, 2-acetamido-2,6-dideoxyhexosyl-4-ulose. The identity of this residue was determined by NMR and mass spectrometry, and by gas chromatography-mass spectrometry analysis of its 2-acetamido-4-deutero-2,6-dideoxyhexosyl derivatives produced by reduction of the 4-keto group using borodeuteride. Mass spectrometric and methylation analyses showed that the 2-acetamido-2,6-dideoxyhexosyl-4-ulosyl residue was 3-linked and attached to the core-region external Kdo III residue of the LPS, the same position as that of QuiNAc in the CE3 LPS. DNA sequencing revealed that the transposon insertion in strain CE166 was located in an open reading frame whose predicted translation product, LpsQ, falls within a large family of predicted open reading frames, which includes biochemically characterized members that are sugar epimerases and/or reductases. A hypothesis to be tested in future work is that lpsQ encodes UDP-2-acetamido-2,6-dideoxyhexosyl-4-ulose reductase, the second step in the synthesis of UDP-QuiNAc from UDP-GlcNAc.  (+info)

Three genes encoding for putative methyl- and acetyltransferases map adjacent to the wzm and wzt genes and are essential for O-antigen biosynthesis in Rhizobium etli CE3. (2/77)

The elucidation of the structure of the O-antigen of Rhizobium etli CE3 predicts that the R. etli CE3 genome must contain genes encoding acetyl- and methyltransferases to confer the corresponding modifications to the O-antigen. We identified three open reading frames (ORFs) upstream of wzm, encoding the membrane component of the O-antigen transporter and located in the lps alpha-region of R. etli CE3. The ORFs encode two putative acetyltransferases with similarity to the CysE-LacA-LpxA-NodL family of acetyltransferases and one putative methyltransferase with sequence motifs common to a wide range of S-adenosyl-L-methionine-dependent methyltransferases. Mutational analysis of the ORFs encoding the putative acetyltransferases and methyltransferase revealed that the acetyl and methyl decorations mediated by these specific enzymes are essential for O-antigen synthesis. Composition analysis and high performance anion exchange chromatography analysis of the lipopolysaccharides (LPSs) of the mutants show that all of these LPSs contain an intact core region and lack the O-antigen polysaccharide. The possible role of these transferases in the decoration of the O-antigen of R. etli is discussed.  (+info)

Biochemical characterization of a Rhizobium etli monovalent cation-stimulated acyl-coenzyme A carboxylase with a high substrate specificity constant for propionyl-coenzyme A. (3/77)

Biotin has a profound effect on the metabolism of rhizobia. It is reported here that the activities of the biotin-dependent enzymes acetyl-coenzyme A carboxylase (ACC; EC 6.4.1.2) and propionyl-coenzyme A carboxylase (PCC; EC 6.4.1.3) are present in all species of the five genera comprising the Rhizobiaceae which were examined. Evidence is presented that the ACC and PCC activities detectable in Rhizobium etli extracts are catalysed by a single acyl-coenzyme A carboxylase. The enzyme from R. etli strain 12-53 was purified 478-fold and displayed its highest activity with propionyl-CoA as substrate, with apparent K(m) and V(max) values of 0.064 mM and 2885 nmol min(-1) (mg protein)(-1), respectively. The enzyme carboxylated acetyl-CoA and butyryl-CoA with apparent K(m) values of 0.392 and 0.144 mM, respectively, and V(max) values of 423 and 268 nmol min(-1) (mg protein)(-1), respectively. K(+), or Cs(+) markedly activated the enzyme, which was essentially inactive in their absence. Electrophoretic analysis indicated that the acyl-CoA carboxylase was composed of a 74 kDa biotin-containing alpha subunit and a 45 kDa biotin-free beta subunit, and gel chromatography indicated a total molecular mass of 620 000 Da. The strong kinetic preference of the enzyme for propionyl-CoA is consistent with its participation in an anaplerotic pathway utilizing this substrate.  (+info)

Regulatory role of Rhizobium etli CNPAF512 fnrN during symbiosis. (4/77)

The Rhizobium etli CNPAF512 fnrN gene was identified in the fixABCX rpoN(2) region. The corresponding protein contains the hallmark residues characteristic of proteins belonging to the class IB group of Fnr-related proteins. The expression of R. etli fnrN is highly induced under free-living microaerobic conditions and during symbiosis. This microaerobic and symbiotic induction of fnrN is not controlled by the sigma factor RpoN and the symbiotic regulator nifA or fixLJ, but it is due to positive autoregulation. Inoculation of Phaseolus vulgaris with an R. etli fnrN mutant strain resulted in a severe reduction in the bacteroid nitrogen fixation capacity compared to the wild-type capacity, confirming the importance of FnrN during symbiosis. The expression of the R. etli fixN, fixG, and arcA genes is strictly controlled by fnrN under free-living microaerobic conditions and in bacteroids during symbiosis with the host. However, there is an additional level of regulation of fixN and fixG under symbiotic conditions. A phylogenetic analysis of the available rhizobial FnrN and FixK proteins grouped the proteins in three different clusters.  (+info)

2-O-methylation of fucosyl residues of a rhizobial lipopolysaccharide is increased in response to host exudate and is eliminated in a symbiotically defective mutant. (5/77)

When Rhizobium etli CE3 was grown in the presence of Phaseolus vulgaris seed extracts containing anthocyanins, its lipopolysaccharide (LPS) sugar composition was changed in two ways: greatly decreased content of what is normally the terminal residue of the LPS, di-O-methylfucose, and a doubling of the 2-O-methylation of other fucose residues in the LPS O antigen. R. etli strain CE395 was isolated after Tn5 mutagenesis of strain CE3 by screening for mutant colonies that did not change antigenically in the presence of seed extract. The LPS of this strain completely lacked 2-O-methylfucose, regardless of whether anthocyanins were present during growth. The mutant gave only pseudonodules in association with P. vulgaris. Interpretation of this phenotype was complicated by a second LPS defect exhibited by the mutant: its LPS population had only about 50% of the normal amount of O-antigen-containing LPS (LPS I). The latter defect could be suppressed genetically such that the resulting strain (CE395 alpha 395) synthesized the normal amount of an LPS I that still lacked 2-O-methylfucose residues. Strain CE395 alpha 395 did not elicit pseudonodules but resulted in significantly slower nodule development, fewer nodules, and less nitrogenase activity than lps(+) strains. The relative symbiotic deficiency was more severe when seeds were planted and inoculated with bacteria before they germinated. These results support previous conclusions that the relative amount of LPS I on the bacterial surface is crucial in symbiosis, but LPS structural features, such as 2-O-methylation of fucose, also may facilitate symbiotic interactions.  (+info)

Glutamine utilization by Rhizobium etli. (6/77)

We undertook the study of the use of glutamine (Gln) as the source of carbon and energy by Rhizobium etli. Tn5-induced mutagenesis allowed us to identify several genes required for Gln utilization, including those coding for two broad-range amino acid transporters and a glutamate dehydrogenase. The isolated mutants were characterized by the analysis of their capacity i) to grow on different media, ii) to transport Gln (uptake assays), and iii) to utilize Gln as the C energy source (CO2 production from Gln). We show that Gln is degraded through the citric acid cycle and that its utilization as the sole C source is related to a change in the bacterial cell shape (from bacillary to coccoid form) and a high susceptibility to a thiol oxidative insult. Both these data and the analysis of ntr-dependent promoters suggested that Gln-grown bacteria are under a condition of C starvation and N sufficiency, and as expected, the addition of glucose counteracted the morphological change and increased both the bacterial growth rate and their resistance to oxidative stress. Finally, a nodulation analysis indicates that the genes involved in Gln transport and degradation are dispensable for the bacterial ability to induce and invade developing nodules, whereas those involved in gluconeogenesis and nucleotide biosynthesis are strictly required.  (+info)

Regulation of transcription and activity of Rhizobium etli glutaminase A. (7/77)

The present study determines the regulatory mechanisms that operate on Rhizobium etli glutaminase A. glsA gene expression levels were evaluated under several metabolic conditions by fusions of the glsA gene promoter and the transcriptional reporter cassette uidA2-aad. glsA expression was directly correlated to the glutaminase A activity found under the tested growth conditions, reaching its maximum level in the presence of glutamine and during exponential growth phase. Glutamine induces glsA expression. The influence of allosteric metabolites on glutaminase A activity was also determined. The purified enzyme was inhibited by 2-oxoglutarate and pyruvate, whereas oxaloacetate and glyoxylate modulate it positively. Glutaminase A is not inhibited by glutamate and is activated by ammonium. Glutaminase A participates in an ATP-consuming cycle where glutamine is continually degraded and resynthesized by glutamine synthetase (GS). GS and glutaminase A activities appear simultaneously during bacterial growth under different metabolic conditions and their control mechanisms are not reciprocal. Slight overproduction in glutaminase A expression causes a reduction in growth yield and a dramatic decrease in bacterial growth. We propose a model for regulation of glutaminase A, and discuss its contribution to glutamine cycle regulation.  (+info)

Identification of functional mob regions in Rhizobium etli: evidence for self-transmissibility of the symbiotic plasmid pRetCFN42d. (8/77)

An approach originally designed to identify functional origins of conjugative transfer (oriT or mob) in a bacterial genome (J. A. Herrera-Cervera, J. M. Sanjuan-Pinilla, J. Olivares, and J. Sanjuan, J. Bacteriol. 180:4583-4590, 1998) was modified to improve its reliability and prevent selection of undesired false mob clones. By following this modified approach, we were able to identify two functional mob regions in the genome of Rhizobium etli CFN42. One corresponds to the recently characterized transfer region of the nonsymbiotic, self-transmissible plasmid pRetCFN42a (C. Tun-Garrido, P. Bustos, V. Gonzalez, and S. Brom, J. Bacteriol. 185:1681-1692, 2003), whereas the second mob region belongs to the symbiotic plasmid pRetCFN42d. The new transfer region identified contains a putative oriT and a typical conjugative (tra) gene cluster organization. Although pRetCFN42d had not previously been shown to be self-transmissible, mobilization of cosmids containing this tra region required the presence of a wild-type pRetCFN42d in the donor cell; the presence of multiple copies of this mob region in CFN42 also promoted conjugal transfer of the Sym plasmid pRetCFN42d. The overexpression of a small open reading frame, named yp028, located downstream of the putative relaxase gene traA, appeared to be responsible for promoting the conjugal transfer of the R. etli pSym under laboratory conditions. This yp028-dependent conjugal transfer required a wild-type pRetCFN42d traA gene. Our results suggest for the first time that the R. etli symbiotic plasmid is self-transmissible and that its transfer is subject to regulation. In wild-type CFN42, pRetCFN42d tra gene expression appears to be insufficient to promote plasmid transfer under standard laboratory conditions; gene yp028 may play some role in the activation of conjugal transfer in response to as-yet-unknown environmental conditions.  (+info)

Rhizobium etli is a gram-negative, aerobic, motile, non-spore forming bacteria that belongs to the Rhizobiaceae family. It has the ability to fix atmospheric nitrogen in a symbiotic relationship with certain leguminous plants, particularly common bean (Phaseolus vulgaris). This bacterium infects the roots of these plants and forms nodules where it converts nitrogen gas into ammonia, a form that can be used by the plant for growth. The nitrogen-fixing ability of Rhizobium etli makes it an important bacteria in agriculture and environmental science.

Rhizobium is not a medical term, but rather a term used in microbiology and agriculture. It refers to a genus of gram-negative bacteria that can fix nitrogen from the atmosphere into ammonia, which can then be used by plants as a nutrient. These bacteria live in the root nodules of leguminous plants (such as beans, peas, and clover) and form a symbiotic relationship with them.

The host plant provides Rhizobium with carbon sources and a protected environment within the root nodule, while the bacteria provide the plant with fixed nitrogen. This mutualistic interaction plays a crucial role in maintaining soil fertility and promoting plant growth.

While Rhizobium itself is not directly related to human health or medicine, understanding its symbiotic relationship with plants can have implications for agricultural practices, sustainable farming, and global food security.

'Rhizobium leguminosarum' is a species of bacteria that can form nitrogen-fixing nodules on the roots of certain leguminous plants, such as clover, peas, and beans. These bacteria have the ability to convert atmospheric nitrogen into ammonia, a form of nitrogen that plants can use for growth. This process, known as biological nitrogen fixation, benefits both the bacteria and the host plant, as the plant provides carbon sources to the bacteria, while the bacteria provide fixed nitrogen to the plant. The formation of this symbiotic relationship is facilitated by a molecular signaling process between the bacterium and the plant.

It's important to note that 'Rhizobium leguminosarum' is not a medical term per se, but rather a term used in microbiology, botany, and agriculture.

"Phaseolus" is a term that refers to a genus of plants in the legume family Fabaceae, also known as the pea family. The most common and well-known species in this genus is "Phaseolus vulgaris," which is commonly called the common bean. This includes many familiar varieties such as kidney beans, black beans, navy beans, pinto beans, and green beans.

These plants are native to the Americas and have been cultivated for thousands of years for their edible seeds (beans) and pods (green beans). They are an important source of protein, fiber, vitamins, and minerals in many diets around the world.

It's worth noting that "Phaseolus" is a taxonomic term used in the scientific classification of plants, and it does not have a specific medical definition. However, the beans from these plants do have various health benefits and potential medicinal properties, such as being associated with reduced risk of heart disease, improved gut health, and better blood sugar control.

Nitrogen fixation is a process by which nitrogen gas (N2) in the air is converted into ammonia (NH3) or other chemically reactive forms, making it available to plants and other organisms for use as a nutrient. This process is essential for the nitrogen cycle and for the growth of many types of plants, as most plants cannot utilize nitrogen gas directly from the air.

In the medical field, nitrogen fixation is not a commonly used term. However, in the context of microbiology and infectious diseases, some bacteria are capable of fixing nitrogen and this ability can contribute to their pathogenicity. For example, certain species of bacteria that colonize the human body, such as those found in the gut or on the skin, may be able to fix nitrogen and use it for their own growth and survival. In some cases, these bacteria may also release fixed nitrogen into the environment, which can have implications for the ecology and health of the host and surrounding ecosystems.

Fabaceae is the scientific name for a family of flowering plants commonly known as the legume, pea, or bean family. This family includes a wide variety of plants that are important economically, agriculturally, and ecologically. Many members of Fabaceae have compound leaves and produce fruits that are legumes, which are long, thin pods that contain seeds. Some well-known examples of plants in this family include beans, peas, lentils, peanuts, clover, and alfalfa.

In addition to their importance as food crops, many Fabaceae species have the ability to fix nitrogen from the atmosphere into the soil through a symbiotic relationship with bacteria that live in nodules on their roots. This makes them valuable for improving soil fertility and is one reason why they are often used in crop rotation and as cover crops.

It's worth noting that Fabaceae is sometimes still referred to by its older scientific name, Leguminosae.

In the context of medicine and biology, symbiosis is a type of close and long-term biological interaction between two different biological organisms. Generally, one organism, called the symbiont, lives inside or on another organism, called the host. This interaction can be mutually beneficial (mutualistic), harmful to the host organism (parasitic), or have no effect on either organism (commensal).

Examples of mutualistic symbiotic relationships in humans include the bacteria that live in our gut and help us digest food, as well as the algae that live inside corals and provide them with nutrients. Parasitic symbioses, on the other hand, involve organisms like viruses or parasitic worms that live inside a host and cause harm to it.

It's worth noting that while the term "symbiosis" is often used in popular culture to refer to any close relationship between two organisms, in scientific contexts it has a more specific meaning related to long-term biological interactions.

Medicinal plants are defined as those plants that contain naturally occurring chemical compounds which can be used for therapeutic purposes, either directly or indirectly. These plants have been used for centuries in various traditional systems of medicine, such as Ayurveda, Chinese medicine, and Native American medicine, to prevent or treat various health conditions.

Medicinal plants contain a wide variety of bioactive compounds, including alkaloids, flavonoids, tannins, terpenes, and saponins, among others. These compounds have been found to possess various pharmacological properties, such as anti-inflammatory, analgesic, antimicrobial, antioxidant, and anticancer activities.

Medicinal plants can be used in various forms, including whole plant material, extracts, essential oils, and isolated compounds. They can be administered through different routes, such as oral, topical, or respiratory, depending on the desired therapeutic effect.

It is important to note that while medicinal plants have been used safely and effectively for centuries, they should be used with caution and under the guidance of a healthcare professional. Some medicinal plants can interact with prescription medications or have adverse effects if used inappropriately.

"Sinorhizobium meliloti" is a species of nitrogen-fixing bacteria that forms nodules on the roots of leguminous plants, such as alfalfa and clover. These bacteria have the ability to convert atmospheric nitrogen into ammonia, which can then be used by the plant for growth and development. This symbiotic relationship benefits both the bacterium and the plant, as the plant provides carbon sources to the bacterium, while the bacterium provides the plant with a source of nitrogen.

"Sinorhizobium meliloti" is gram-negative, motile, and rod-shaped, and it can be found in soil and root nodules of leguminous plants. It has a complex genome consisting of a circular chromosome and several plasmids, which carry genes involved in nitrogen fixation and other important functions. The bacteria are able to sense and respond to various environmental signals, allowing them to adapt to changing conditions and establish successful symbioses with their host plants.

In addition to its agricultural importance, "Sinorhizobium meliloti" is also a model organism for studying the molecular mechanisms of symbiotic nitrogen fixation and bacterial genetics.

Pyruvate carboxylase is a biotin-containing enzyme that plays a crucial role in gluconeogenesis, the process of generating new glucose molecules from non-carbohydrate sources. The enzyme catalyzes the conversion of pyruvate to oxaloacetate, an important intermediate in several metabolic pathways, particularly in the liver, kidneys, and brain.

The reaction catalyzed by pyruvate carboxylase is as follows:

Pyruvate + CO2 + ATP + H2O → Oxaloacetate + ADP + Pi + 2H+

In this reaction, pyruvate reacts with bicarbonate (HCO3-) to form oxaloacetate, consuming one molecule of ATP in the process. The generation of oxaloacetate provides a key entry point for non-carbohydrate precursors, such as lactate and certain amino acids, to enter the gluconeogenic pathway.

Pyruvate carboxylase deficiency is a rare but severe genetic disorder that can lead to neurological impairment and developmental delays due to the disruption of energy metabolism in the brain.

Rhizobium tropici is a gram-negative, aerobic, motile, non-spore forming bacteria that belongs to the Rhizobiaceae family. It has the ability to fix atmospheric nitrogen in a symbiotic relationship with certain leguminous plants, particularly beans and other tropical legumes. The bacterium infects the roots of these plants and forms nodules where it converts nitrogen gas into ammonia, which is then used by the plant for growth. Rhizobium tropici is known for its ability to survive in a wide range of temperatures and soil conditions, making it an important contributor to sustainable agriculture in tropical regions.

A bacterial gene is a segment of DNA (or RNA in some viruses) that contains the genetic information necessary for the synthesis of a functional bacterial protein or RNA molecule. These genes are responsible for encoding various characteristics and functions of bacteria such as metabolism, reproduction, and resistance to antibiotics. They can be transmitted between bacteria through horizontal gene transfer mechanisms like conjugation, transformation, and transduction. Bacterial genes are often organized into operons, which are clusters of genes that are transcribed together as a single mRNA molecule.

It's important to note that the term "bacterial gene" is used to describe genetic elements found in bacteria, but not all genetic elements in bacteria are considered genes. For example, some DNA sequences may not encode functional products and are therefore not considered genes. Additionally, some bacterial genes may be plasmid-borne or phage-borne, rather than being located on the bacterial chromosome.

Root nodules in plants refer to the specialized structures formed through the symbiotic relationship between certain leguminous plants and nitrogen-fixing bacteria, most commonly belonging to the genus Rhizobia. These nodules typically develop on the roots of the host plant, providing an ideal environment for the bacteria to convert atmospheric nitrogen into ammonia, a form that can be directly utilized by the plant for growth and development.

The formation of root nodules begins with the infection of the plant's root hair cells by Rhizobia bacteria. This interaction triggers a series of molecular signals leading to the differentiation of root cortical cells into nodule primordia, which eventually develop into mature nodules. The nitrogen-fixing bacteria reside within these nodules in membrane-bound compartments called symbiosomes, where they reduce atmospheric nitrogen into ammonia through an enzyme called nitrogenase.

The plant, in turn, provides the bacteria with carbon sources and other essential nutrients required for their growth and survival within the nodules. The fixed nitrogen is then transported from the root nodules to other parts of the plant, enhancing its overall nitrogen nutrition and promoting sustainable growth without the need for external nitrogen fertilizers.

In summary, root nodules in plants are essential structures formed through symbiotic associations with nitrogen-fixing bacteria, allowing leguminous plants to convert atmospheric nitrogen into a usable form while also benefiting the environment by reducing the reliance on chemical nitrogen fertilizers.

"Sinorhizobium" is a genus of bacteria that can form nitrogen-fixing nodules on the roots of certain leguminous plants, such as beans and alfalfa. These bacteria are able to convert atmospheric nitrogen into ammonia, which the plant can then use for growth. This symbiotic relationship benefits both the plant and the bacteria - the plant receives a source of nitrogen, while the bacteria receive carbon and other nutrients from the plant.

The genus "Sinorhizobium" is part of the family Rhizobiaceae and includes several species that are important for agriculture and the global nitrogen cycle. Some examples of "Sinorhizobium" species include S. meliloti, which forms nodules on alfalfa and other Medicago species, and S. fredii, which forms nodules on soybeans and other Glycine species.

It's worth noting that the taxonomy of nitrogen-fixing bacteria has undergone significant revisions in recent years, and some "Sinorhizobium" species have been reclassified as members of other genera. However, the genus "Sinorhizobium" remains a valid and important group of nitrogen-fixing bacteria.

Bacterial proteins are a type of protein that are produced by bacteria as part of their structural or functional components. These proteins can be involved in various cellular processes, such as metabolism, DNA replication, transcription, and translation. They can also play a role in bacterial pathogenesis, helping the bacteria to evade the host's immune system, acquire nutrients, and multiply within the host.

Bacterial proteins can be classified into different categories based on their function, such as:

1. Enzymes: Proteins that catalyze chemical reactions in the bacterial cell.
2. Structural proteins: Proteins that provide structural support and maintain the shape of the bacterial cell.
3. Signaling proteins: Proteins that help bacteria to communicate with each other and coordinate their behavior.
4. Transport proteins: Proteins that facilitate the movement of molecules across the bacterial cell membrane.
5. Toxins: Proteins that are produced by pathogenic bacteria to damage host cells and promote infection.
6. Surface proteins: Proteins that are located on the surface of the bacterial cell and interact with the environment or host cells.

Understanding the structure and function of bacterial proteins is important for developing new antibiotics, vaccines, and other therapeutic strategies to combat bacterial infections.

Molecular sequence data refers to the specific arrangement of molecules, most commonly nucleotides in DNA or RNA, or amino acids in proteins, that make up a biological macromolecule. This data is generated through laboratory techniques such as sequencing, and provides information about the exact order of the constituent molecules. This data is crucial in various fields of biology, including genetics, evolution, and molecular biology, allowing for comparisons between different organisms, identification of genetic variations, and studies of gene function and regulation.

Gene expression regulation in bacteria refers to the complex cellular processes that control the production of proteins from specific genes. This regulation allows bacteria to adapt to changing environmental conditions and ensure the appropriate amount of protein is produced at the right time.

Bacteria have a variety of mechanisms for regulating gene expression, including:

1. Operon structure: Many bacterial genes are organized into operons, which are clusters of genes that are transcribed together as a single mRNA molecule. The expression of these genes can be coordinately regulated by controlling the transcription of the entire operon.
2. Promoter regulation: Transcription is initiated at promoter regions upstream of the gene or operon. Bacteria have regulatory proteins called sigma factors that bind to the promoter and recruit RNA polymerase, the enzyme responsible for transcribing DNA into RNA. The binding of sigma factors can be influenced by environmental signals, allowing for regulation of transcription.
3. Attenuation: Some operons have regulatory regions called attenuators that control transcription termination. These regions contain hairpin structures that can form in the mRNA and cause transcription to stop prematurely. The formation of these hairpins is influenced by the concentration of specific metabolites, allowing for regulation of gene expression based on the availability of those metabolites.
4. Riboswitches: Some bacterial mRNAs contain regulatory elements called riboswitches that bind small molecules directly. When a small molecule binds to the riboswitch, it changes conformation and affects transcription or translation of the associated gene.
5. CRISPR-Cas systems: Bacteria use CRISPR-Cas systems for adaptive immunity against viruses and plasmids. These systems incorporate short sequences from foreign DNA into their own genome, which can then be used to recognize and cleave similar sequences in invading genetic elements.

Overall, gene expression regulation in bacteria is a complex process that allows them to respond quickly and efficiently to changing environmental conditions. Understanding these regulatory mechanisms can provide insights into bacterial physiology and help inform strategies for controlling bacterial growth and behavior.

A plant root is not a medical term per se, but it is a term from botany, which is the study of plants. However, I can certainly provide a definition for you.

Plant roots are the underground organs of a plant that typically grow downward into the soil. They serve several important functions, including:

1. Anchorage: Roots help to stabilize the plant and keep it upright in the ground.
2. Absorption: Roots absorb water and nutrients from the soil, which are essential for the plant's growth and development.
3. Conduction: Roots conduct water and nutrients up to the above-ground parts of the plant, such as the stem and leaves.
4. Vegetative reproduction: Some plants can reproduce vegetatively through their roots, producing new plants from root fragments or specialized structures called rhizomes or tubers.

Roots are composed of several different tissues, including the epidermis, cortex, endodermis, and vascular tissue. The epidermis is the outermost layer of the root, which secretes a waxy substance called suberin that helps to prevent water loss. The cortex is the middle layer of the root, which contains cells that store carbohydrates and other nutrients. The endodermis is a thin layer of cells that surrounds the vascular tissue and regulates the movement of water and solutes into and out of the root. The vascular tissue consists of xylem and phloem, which transport water and nutrients throughout the plant.

Bacterial DNA refers to the genetic material found in bacteria. It is composed of a double-stranded helix containing four nucleotide bases - adenine (A), thymine (T), guanine (G), and cytosine (C) - that are linked together by phosphodiester bonds. The sequence of these bases in the DNA molecule carries the genetic information necessary for the growth, development, and reproduction of bacteria.

Bacterial DNA is circular in most bacterial species, although some have linear chromosomes. In addition to the main chromosome, many bacteria also contain small circular pieces of DNA called plasmids that can carry additional genes and provide resistance to antibiotics or other environmental stressors.

Unlike eukaryotic cells, which have their DNA enclosed within a nucleus, bacterial DNA is present in the cytoplasm of the cell, where it is in direct contact with the cell's metabolic machinery. This allows for rapid gene expression and regulation in response to changing environmental conditions.

A plasmid is a small, circular, double-stranded DNA molecule that is separate from the chromosomal DNA of a bacterium or other organism. Plasmids are typically not essential for the survival of the organism, but they can confer beneficial traits such as antibiotic resistance or the ability to degrade certain types of pollutants.

Plasmids are capable of replicating independently of the chromosomal DNA and can be transferred between bacteria through a process called conjugation. They often contain genes that provide resistance to antibiotics, heavy metals, and other environmental stressors. Plasmids have also been engineered for use in molecular biology as cloning vectors, allowing scientists to replicate and manipulate specific DNA sequences.

Plasmids are important tools in genetic engineering and biotechnology because they can be easily manipulated and transferred between organisms. They have been used to produce vaccines, diagnostic tests, and genetically modified organisms (GMOs) for various applications, including agriculture, medicine, and industry.

Rhizobiaceae is a family of bacteria that have the ability to fix nitrogen. These bacteria are gram-negative, motile, and rod-shaped. They are commonly found in the root nodules of leguminous plants, where they form a symbiotic relationship with the plant. The bacteria provide the plant with fixed nitrogen, while the plant provides the bacteria with carbon and a protected environment.

The most well-known genus of Rhizobiaceae is Rhizobium, which includes several species that are important for agriculture because of their ability to fix nitrogen in the root nodules of legumes. Other genera in this family include Bradyrhizobium, Mesorhizobium, and Sinorhizobium.

It's worth noting that while Rhizobiaceae bacteria are generally beneficial, they can sometimes cause disease in plants under certain conditions. For example, some strains of Rhizobium can cause leaf spots on certain crops.

Nitrogenase is not a medical term, but a biological term used in the field of microbiology and biochemistry. It refers to an enzyme complex found in certain bacteria and archaea that have the ability to fix nitrogen gas (N2) from the atmosphere into ammonia (NH3), a form of nitrogen that can be utilized by plants and other organisms for growth and development. This process is known as biological nitrogen fixation, which is essential for maintaining the global nitrogen cycle and supporting life on Earth.

The medical field may refer to nitrogenase in relation to human health in the context of understanding the role of nitrogen-fixing bacteria in soil fertility and their impact on agriculture and food production. However, there is no direct medical definition or application for nitrogenase.

Lipid A is the biologically active component of lipopolysaccharides (LPS), which are found in the outer membrane of Gram-negative bacteria. It is responsible for the endotoxic activity of LPS and plays a crucial role in the pathogenesis of gram-negative bacterial infections. Lipid A is a glycophosphatidylinositol (GPI) anchor, consisting of a glucosamine disaccharide backbone with multiple fatty acid chains and phosphate groups attached to it. It can induce the release of proinflammatory cytokines, fever, and other symptoms associated with sepsis when introduced into the bloodstream.

Fucose is a type of sugar molecule that is often found in complex carbohydrates known as glycans, which are attached to many proteins and lipids in the body. It is a hexose sugar, meaning it contains six carbon atoms, and is a type of L-sugar, which means that it rotates plane-polarized light in a counterclockwise direction.

Fucose is often found at the ends of glycan chains and plays important roles in various biological processes, including cell recognition, signaling, and interaction. It is also a component of some blood group antigens and is involved in the development and function of the immune system. Abnormalities in fucosylation (the addition of fucose to glycans) have been implicated in various diseases, including cancer, inflammation, and neurological disorders.

A base sequence in the context of molecular biology refers to the specific order of nucleotides in a DNA or RNA molecule. In DNA, these nucleotides are adenine (A), guanine (G), cytosine (C), and thymine (T). In RNA, uracil (U) takes the place of thymine. The base sequence contains genetic information that is transcribed into RNA and ultimately translated into proteins. It is the exact order of these bases that determines the genetic code and thus the function of the DNA or RNA molecule.

RNA polymerase sigma 54 (σ^54) is not a medical term, but rather a molecular biology concept. It's a type of sigma factor that associates with the core RNA polymerase to form the holoenzyme in bacteria. Sigma factors are subunits of RNA polymerase that recognize and bind to specific promoter sequences on DNA, thereby initiating transcription of genes into messenger RNA (mRNA).

σ^54 is unique because it requires additional energy to melt the DNA strands at the promoter site for transcription initiation. This energy comes from ATP hydrolysis, which is facilitated by a group of proteins called bacterial enhancer-binding proteins (bEBPs). The σ^54-dependent promoters typically contain two conserved sequence elements: an upstream activating sequence (UAS) and a downstream core promoter element (DPE).

In summary, RNA polymerase sigma 54 is a type of sigma factor that plays a crucial role in the initiation of transcription in bacteria. It specifically recognizes and binds to certain promoter sequences on DNA, and its activity requires ATP hydrolysis facilitated by bEBPs.

Hydroxybutyrates are compounds that contain a hydroxyl group (-OH) and a butyric acid group. More specifically, in the context of clinical medicine and biochemistry, β-hydroxybutyrate (BHB) is often referred to as a "ketone body."

Ketone bodies are produced by the liver during periods of low carbohydrate availability, such as during fasting, starvation, or a high-fat, low-carbohydrate diet. BHB is one of three major ketone bodies, along with acetoacetate and acetone. These molecules serve as alternative energy sources for the brain and other tissues when glucose levels are low.

In some pathological states, such as diabetic ketoacidosis, the body produces excessive amounts of ketone bodies, leading to a life-threatening metabolic acidosis. Elevated levels of BHB can also be found in other conditions like alcoholism, severe illnesses, and high-fat diets.

It is important to note that while BHB is a hydroxybutyrate, not all hydroxybutyrates are ketone bodies. The term "hydroxybutyrates" can refer to any compound containing both a hydroxyl group (-OH) and a butyric acid group.

'Medicago sativa' is the scientific name for a plant species more commonly known as alfalfa. In a medical context, alfalfa is often considered a herbal supplement and its medicinal properties include being a source of vitamins, minerals, and antioxidants. It has been used in traditional medicine to treat a variety of conditions such as kidney problems, asthma, arthritis, and high cholesterol levels. However, it's important to note that the effectiveness of alfalfa for these uses is not conclusively established by scientific research and its use may have potential risks or interactions with certain medications. Always consult a healthcare provider before starting any new supplement regimen.

Oxaloacetic acid is a chemical compound that plays a significant role in the Krebs cycle, also known as the citric acid cycle. It is a key metabolic intermediate in both glucose and fatty acid catabolism. Oxaloacetic acid is a four-carbon carboxylic acid that has two carboxyl groups and one ketone group.

In the Krebs cycle, oxaloacetic acid reacts with acetyl-CoA (an activated form of acetic acid) to form citric acid, releasing CoA and initiating the cycle. Throughout the cycle, oxaloacetic acid is continuously regenerated from malate, another intermediate in the cycle.

Additionally, oxaloacetic acid plays a role in amino acid metabolism as it can accept an amino group (NH3) to form aspartic acid, which is an essential component of several biochemical processes, including protein synthesis and the urea cycle.

Plant root nodulation is a type of symbiotic relationship between certain plants (mostly legumes) and nitrogen-fixing bacteria, such as Rhizobia species. This process involves the formation of specialized structures called nodules on the roots of the host plant. The bacteria inhabit these nodules and convert atmospheric nitrogen into ammonia, a form of nitrogen that plants can use for growth. In return, the plant provides the bacteria with carbon sources and a protected environment for growth. This mutualistic relationship helps improve soil fertility and promotes sustainable agriculture.

DNA Sequence Analysis is the systematic determination of the order of nucleotides in a DNA molecule. It is a critical component of modern molecular biology, genetics, and genetic engineering. The process involves determining the exact order of the four nucleotide bases - adenine (A), guanine (G), cytosine (C), and thymine (T) - in a DNA molecule or fragment. This information is used in various applications such as identifying gene mutations, studying evolutionary relationships, developing molecular markers for breeding, and diagnosing genetic diseases.

The process of DNA Sequence Analysis typically involves several steps, including DNA extraction, PCR amplification (if necessary), purification, sequencing reaction, and electrophoresis. The resulting data is then analyzed using specialized software to determine the exact sequence of nucleotides.

In recent years, high-throughput DNA sequencing technologies have revolutionized the field of genomics, enabling the rapid and cost-effective sequencing of entire genomes. This has led to an explosion of genomic data and new insights into the genetic basis of many diseases and traits.

"O antigens" are a type of antigen found on the lipopolysaccharide (LPS) component of the outer membrane of Gram-negative bacteria. The "O" in O antigens stands for "outer" membrane. These antigens are composed of complex carbohydrates and can vary between different strains of the same species of bacteria, which is why they are also referred to as the bacterial "O" somatic antigens.

The O antigens play a crucial role in the virulence and pathogenesis of many Gram-negative bacteria, as they help the bacteria evade the host's immune system by changing the structure of the O antigen, making it difficult for the host to mount an effective immune response against the bacterial infection.

The identification and classification of O antigens are important in epidemiology, clinical microbiology, and vaccine development, as they can be used to differentiate between different strains of bacteria and to develop vaccines that provide protection against specific bacterial infections.

A "carbohydrate sequence" refers to the specific arrangement or order of monosaccharides (simple sugars) that make up a carbohydrate molecule, such as a polysaccharide or an oligosaccharide. Carbohydrates are often composed of repeating units of monosaccharides, and the sequence in which these units are arranged can have important implications for the function and properties of the carbohydrate.

For example, in glycoproteins (proteins that contain carbohydrate chains), the specific carbohydrate sequence can affect how the protein is processed and targeted within the cell, as well as its stability and activity. Similarly, in complex carbohydrates like starch or cellulose, the sequence of glucose units can determine whether the molecule is branched or unbranched, which can have implications for its digestibility and other properties.

Therefore, understanding the carbohydrate sequence is an important aspect of studying carbohydrate structure and function in biology and medicine.

An amino acid sequence is the specific order of amino acids in a protein or peptide molecule, formed by the linking of the amino group (-NH2) of one amino acid to the carboxyl group (-COOH) of another amino acid through a peptide bond. The sequence is determined by the genetic code and is unique to each type of protein or peptide. It plays a crucial role in determining the three-dimensional structure and function of proteins.

A mutation is a permanent change in the DNA sequence of an organism's genome. Mutations can occur spontaneously or be caused by environmental factors such as exposure to radiation, chemicals, or viruses. They may have various effects on the organism, ranging from benign to harmful, depending on where they occur and whether they alter the function of essential proteins. In some cases, mutations can increase an individual's susceptibility to certain diseases or disorders, while in others, they may confer a survival advantage. Mutations are the driving force behind evolution, as they introduce new genetic variability into populations, which can then be acted upon by natural selection.

Phylogeny is the evolutionary history and relationship among biological entities, such as species or genes, based on their shared characteristics. In other words, it refers to the branching pattern of evolution that shows how various organisms have descended from a common ancestor over time. Phylogenetic analysis involves constructing a tree-like diagram called a phylogenetic tree, which depicts the inferred evolutionary relationships among organisms or genes based on molecular sequence data or other types of characters. This information is crucial for understanding the diversity and distribution of life on Earth, as well as for studying the emergence and spread of diseases.

A bacterial genome is the complete set of genetic material, including both DNA and RNA, found within a single bacterium. It contains all the hereditary information necessary for the bacterium to grow, reproduce, and survive in its environment. The bacterial genome typically includes circular chromosomes, as well as plasmids, which are smaller, circular DNA molecules that can carry additional genes. These genes encode various functional elements such as enzymes, structural proteins, and regulatory sequences that determine the bacterium's characteristics and behavior.

Bacterial genomes vary widely in size, ranging from around 130 kilobases (kb) in Mycoplasma genitalium to over 14 megabases (Mb) in Sorangium cellulosum. The complete sequencing and analysis of bacterial genomes have provided valuable insights into the biology, evolution, and pathogenicity of bacteria, enabling researchers to better understand their roles in various diseases and potential applications in biotechnology.

DNA transposable elements, also known as transposons or jumping genes, are mobile genetic elements that can change their position within a genome. They are composed of DNA sequences that include genes encoding the enzymes required for their own movement (transposase) and regulatory elements. When activated, the transposase recognizes specific sequences at the ends of the element and catalyzes the excision and reintegration of the transposable element into a new location in the genome. This process can lead to genetic variation, as the insertion of a transposable element can disrupt the function of nearby genes or create new combinations of gene regulatory elements. Transposable elements are widespread in both prokaryotic and eukaryotic genomes and are thought to play a significant role in genome evolution.

Genetic conjugation is a type of genetic transfer that occurs between bacterial cells. It involves the process of one bacterium (the donor) transferring a piece of its DNA to another bacterium (the recipient) through direct contact or via a bridge-like connection called a pilus. This transferred DNA may contain genes that provide the recipient cell with new traits, such as antibiotic resistance or virulence factors, which can make the bacteria more harmful or difficult to treat. Genetic conjugation is an important mechanism for the spread of antibiotic resistance and other traits among bacterial populations.

A genetic complementation test is a laboratory procedure used in molecular genetics to determine whether two mutated genes can complement each other's function, indicating that they are located at different loci and represent separate alleles. This test involves introducing a normal or wild-type copy of one gene into a cell containing a mutant version of the same gene, and then observing whether the presence of the normal gene restores the normal function of the mutated gene. If the introduction of the normal gene results in the restoration of the normal phenotype, it suggests that the two genes are located at different loci and can complement each other's function. However, if the introduction of the normal gene does not restore the normal phenotype, it suggests that the two genes are located at the same locus and represent different alleles of the same gene. This test is commonly used to map genes and identify genetic interactions in a variety of organisms, including bacteria, yeast, and animals.

Biotin is a water-soluble vitamin, also known as Vitamin B7 or Vitamin H. It is a cofactor for several enzymes involved in metabolism, particularly in the synthesis and breakdown of fatty acids, amino acids, and carbohydrates. Biotin plays a crucial role in maintaining healthy skin, hair, nails, nerves, and liver function. It is found in various foods such as nuts, seeds, whole grains, milk, and vegetables. Biotin deficiency is rare but can occur in people with malnutrition, alcoholism, pregnancy, or certain genetic disorders.

"Reclassification of American Rhizobium leguminosarum biovar phaseoli type I strains as Rhizobium etli sp. nov". Int J Syst ... "Rhizobium etli". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved May 28, 2021. v t e (Articles with ... Rhizobium etli is a Gram-negative root-nodule bacterium. Segovia L, Young JP, Martínez-Romero E (1993). " ...
Silva, C.; Vinuesa, P.; Eguiarte, L. E.; Martínez-Romero, E.; Souza, V. (2003). "Rhizobium etli and Rhizobium gallicum Nodulate ... Shamseldin, Abdelaal; Werner, Dietrich (2006). "Presence of Rhizobium etli bv. phaseoli and Rhizobium gallicum bv. gallicum in ... Amarger N, Macheret V, Laguerre G (October 1997). "Rhizobium gallicum sp. nov. and Rhizobium giardinii sp. nov., from Phaseolus ... Amarger, N.; Macheret, V.; Laguerre, G. (1997). "Rhizobium gallicum sp. nov. and Rhizobium giardinii sp. nov., from Phaseolus ...
2015 Rhizobium endophyticum López-López et al. 2010 Rhizobium esperanzae Cordeiro et al. 2017 Rhizobium etli Segovia et al. ... 2017 Rhizobium alamii Berge et al. 2009 "Rhizobium album" Hang et al. 2019 "Rhizobium albus" Li et al. 2017 Rhizobium altiplani ... 2016 Rhizobium alvei Sheu et al. 2015 Rhizobium anhuiense Zhang et al. 2015 Rhizobium aquaticum Máthé et al. 2019 "Rhizobium ... 2021 Rhizobium freirei Dall'Agnol et al. 2013 Rhizobium gallicum Amarger et al. 1997 Rhizobium gei Shi et al. 2016 "Rhizobium ...
"Oxamate is an alternative substrate for pyruvate carboxylase from Rhizobium etli". Biochemistry. 52 (17): 2888-94. doi:10.1021/ ...
Téllez-Sosa J, Soberón N, Vega-Segura A, Torres-Márquez ME, Cevallos MA (July 2002). "The Rhizobium etli cyaC product: ... Prevotella ruminicola O68902 and Rhizobium etli Q8KY20, respectively) and have not been extensively characterized. There are a ...
August 2007). "Rhizavidin from Rhizobium etli: the first natural dimer in the avidin protein family". The Biochemical Journal. ...
2006). "The partitioned Rhizobium etli genome: genetic and metabolic redundancy in seven interacting replicons". Proc. Natl. ...
Rhizobiu binae is genetically very similar to its close relatives Rhizobium etli and Rhizobum phaseoli. The GC-content of the ... Rhizobium binae are rod-shaped bacteria found in the soil. They require oxygen and do not form spores. Rhizobium binae grow ... nov., Rhizobium bangladeshense sp. nov. And Rhizobium binae sp. nov. From lentil (Lens culinaris) nodules". International ... Rhizobium binae was first described in 2015 by M. Harun-or Rashid and others. It was isolated from the root nodules of Lens ...
... is genetically very closely related to the related species Rhizobium etli and Rhizobum phaseoli. The GC- ... Rhizobium lentis are rod-shaped bacteria found in the soil. They require oxygen and do not form spores. Rhizobium lentis grow ... nov., Rhizobium bangladeshense sp. nov. And Rhizobium binae sp. nov. From lentil (Lens culinaris) nodules". International ... Rhizobium lentis can utilize α-D lactose, β-methyl-D-glucoside, D-sorbitol, D-mannito, D-arbitol-glycerol, D-fructose-6- ...
Rhizobium leguminosarum bv.viciae, R. leguminosarum bv. trifolii, R. etli, and several Mesorhizobium species), in the plant ... The Rhizobium group, presented also a well conserved motif in this region for which no significant similarity could be found ( ... The Sinorhizobium, Rhizobium, and Agrobacterium groups presented a very well conserved motif that matches the consensus ... The genomic regions of the αr45 sRNAs from Sinorhizobium, Rhizobium, A. vitis and A. radiobacter exhibited a great degree of ...
trifolii WSM1325 (plasmid pR132504 and plasmid pR132502), in Rhizobium etli CFN 42 plasmid p42f and in the chromosomes of ... Rhizobium leguminosarum bv.viciae, R. leguminosarum bv. trifolii and R. etli), as well as in the human and plant pathogens ... two copies in Rhizobium leguminosarum bv. viciae (chromosome and plasmid pRL11), two copies in Rhizobium leguminosarumbv. ... viciae (Rlvr35C),and R. etli CFN 42 plasmid p42f (ReCFNr35f), which are encoded in the opposite strand of annotated genes, ...
Genetic analysis of R. bangladeshense has shown it to be most closely related to Rhizobium etli and Rhizobium phaseoli. The DNA ... Rhizobium bangladeshense is a gram-negative bacterium which was isolated from root nodules of lentils in Bangladesh. Rhizobium ... nov., Rhizobium bangladeshense sp. nov. And Rhizobium binae sp. nov. From lentil (Lens culinaris) nodules". International ... Rashid, M.H., Gonzalez, H., Young, J.P.W., and Wink, M. (2014) Rhizobium leguminosarum is the symbiont of lentil in the Middle ...
trifolii, R. etli, and several Mesorhizobium species), in the plant pathogens belonging to Agrobacterium species (i.e. A. ... Moreover, full-length Smr14C homologs have been identified in several nitrogen-fixing symbiotic rhizobia (i.e. R. leguminosarum ... MacLellan SR, MacLean AM, Finan TM (June 2006). "Promoter prediction in the rhizobia". Microbiology. 152 (Pt 6): 1751-63. doi: ... etli strains CFN 42 and CIAT 652, the reference R. leguminosarum bv. viciae 3841 strain, and the Agrobacterium species A. vitis ...
Members tend to be described as glutaminase A (glsA), where B (glsB) is unknown and may not be homologous (as in Rhizobium etli ...
In contrast the Rhizobium etli, tetramer in complex with ethyl-CoA, a non-hydrolyzable analog of acetyl-CoA, possesses only one ... etli) permit detailed investigations into the individual catalytic and regulatory sites of the enzyme. The reaction mechanism ...
viciae 3841 (NC_008380), Rlt1325r7C = Rhizobium leguminosarum bv. trifolii WSM1325 (NC_012850), ReCFNr7C = Rhizobium etli CFN ... Rhizobium etli CIAT 652 (NC_010994), Arr7CI = Agrobacterium radiobacter K84 chromosome 1 (NC_011985), Rlt2304r7C = Rhizobium ... trifolii, R. etli, and several Mesorhizobium species), in the plant pathogens belonging to Agrobacterium species (i.e. A. ... The αr7 sRNAs' genomic regions of the Sinorhizobium, Rhizobium and Agrobacterium group members exhibited a great degree of ...
... etli strains CFN 42 and CIAT 652, the reference R. leguminosarum bv. viciae 3841 strain, Rhizobium NGR234, and the ... trifolii, R. etli, and several Mesorhizobium species), in the plant pathogens belonging to Agrobacterium species (i.e. A. ... 6. MacLellan SR, MacLean AM, Finan TM (2006). "Promoter prediction in the rhizobia". Microbiology. 152 (6): 1751-1763. doi: ... and structure conservation analysis have identified full-length Smr9C homologs in several nitrogen-fixing symbiotic rhizobia (i ...
... fredii Rhizobium species: two R. leguminosarum trifolii strains (WSM304 and WSM35), two R. etli strains CFN 42 and CIAT 652, ... trifolii, R. etli, and several Mesorhizobium species), in the plant pathogens belonging to Agrobacterium species (i.e. A. ... In the first group are the tandem αr15C1 and αr15C2 loci of the Rhizobium, Sinorhizobium and Agrobacterium species. They ... MacLellan SR, MacLean AM, Finan TM (June 2006). "Promoter prediction in the rhizobia". Microbiology. 152 (Pt 6): 1751-63. doi: ...
Rhizobium MeSH B03.440.400.425.700.800.337 - Rhizobium etli MeSH B03.440.400.425.700.800.450 - Rhizobium leguminosarum MeSH ... Rhizobium MeSH B03.660.050.730.670.337 - Rhizobium etli MeSH B03.660.050.730.670.450 - Rhizobium leguminosarum MeSH B03.660. ... Rhizobium radiobacter MeSH B03.440.400.425.700.800.800 - Rhizobium tropici MeSH B03.440.400.425.700.887 - Sinorhizobium MeSH ... Rhizobium radiobacter MeSH B03.660.050.730.670.800 - Rhizobium tropici MeSH B03.660.050.730.835 - Sinorhizobium MeSH B03.660. ...
"Reclassification of American Rhizobium leguminosarum biovar phaseoli type I strains as Rhizobium etli sp. nov". Int J Syst ... "Rhizobium etli". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved May 28, 2021. v t e (Articles with ... Rhizobium etli is a Gram-negative root-nodule bacterium. Segovia L, Young JP, Martínez-Romero E (1993). " ...
Funciton: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Lactaldehyde dehydrogenase (EC 1.2.1.22) ...
Role of trehalose in heat and desiccation tolerance in the soil bacterium Rhizobium etli  Reina Bueno, Mercedes; Hidalgo ...
Expression pattern of Rhizobium etli ccmIEFH genes involved in c-type cytochrome maturation. Gene. , 250. (1-2), 149-157. . ... Expression pattern of Rhizobium etli ccmIEFH genes involved in c-type cytochrome maturation. Gene. , 250. (1-2), 149-157. . ... Rhizobium etli cycHJKL gene locus involved in c-type cytochrome biogenesis: sequence analysis and characterization of two cycH ... Rhizobium etli cycHJKL gene locus involved in c-type cytochrome biogenesis: sequence analysis and characterization of two cycH ...
Rhizobium etli asparaginase II: An alternative for acute lymphoblastic leukemia (ALL) treatment. Bioengineered. 4(1). [71] ... Transcriptomic analysis of the process of biofilm formation in Rhizobium etli CFN42. Archives of Microbiology. 198:847-860. [50 ... Biochemical characterization of recombinant L-asparaginase (AnsA) from Rhizobium etli, a member of an increasing Rhizobial-type ... Isolation and characterization of functional insertion sequences of rhizobia FEMS Microbiol.Lett., 261, 25-31. [89] ...
Rhizobium etli CFN 42. EC No.:. 3.2.1.1. Synonyms:. Glycogenase; α amylase, α-amylase; endoamylase; Taka-amylase A; 1,4-α-D- ...
Characterization of Rhizobium etli chromosomal gene required for nodule development on Phaseolus vulgaris L. World J Microbiol ... Rhizobia in tropical legumes: cultural characteristics of Bradyrhizobium and Rhizobium sp. Soil Biol Biochem 22(1):23-28. WORD ... Woolfenden, R. POPULATION DYNAMICS OF RHIZOBIUM JAPONICUMAND RHIZOBIUM LEGUMINOSARUM IN HOST AND NON-HOST RHIZOSPHERES.WORD PDF ... Singleton, P. THE EFFECT OF SALINITY ON RHIZOBIUM SURVIVAL, NODULE FUNCTION AND NODULE FORMATION IN THE SOYBEAN‑RHIZOBIUM ...
CRYSTAL STRUCTURE OF PROBABLE SUGAR KINASE PROTEIN FROM RHIZOBIUM ETLI CFN 42 COMPLEXED WITH N1-(2.3-DIHYDRO-1H-INDEN-5-YL) ... CRYSTAL STRUCTURE OF PROBABLE SUGAR KINASE PROTEIN FROM RHIZOBIUM ETLI CFN 42 COMPLEXED WITH 2-(2,5-DIMETHYL-1,3-THIAZOL-4-YL) ... CRYSTAL STRUCTURE OF PROBABLE SUGAR KINASE PROTEIN FROM RHIZOBIUM ETLI CFN 42 COMPLEXED WITH QUINOLINE-3-CARBOXYLIC ACID. ... CRYSTAL STRUCTURE OF PROBABLE SUGAR KINASE PROTEIN FROM RHIZOBIUM ETLI CFN 42 COMPLEXED WITH N-(HYDROXYMETHYL)BENZAMIDE AND 4- ...
CinS is conserved in other rhizobia, including Rhizobium etli; the previously observed effect of cinI and cinR mutations ... Rhizobium etli; Rhizobium leguminosarum; Acyl-Butyrolactones; Bacterial Proteins; Gene Expression Regulation, Bacterial; Genes ... Rhizobium etli; Rhizobium leguminosarum; biological model; biosynthesis; gene expression regulation; metabolism; physiology; ... Rosemeyer, V., Michiels, J., Verreth, C., Vanderleyden, J., luxl- and luxR-homologous genes of Rhizobium etli CNPAF512 ...
Rhizobium etli; Rpal: Rhodopseudomonas palustris; Rsol: Ralstonia solanacearum; Save: Streptomyces avermitilis; Ssp.: ...
Rhizobium etli CFN 42. 150. TrbF. 241518229. Trb. NC_012853. Rhizobium leguminosarum bv. trifolii WSM1325. ...
Rhizobium etli CFN 42. Bacteria. -. - -. SER33_YEAST. SER33; phosphoglycerate dehydrogenase SER33 (EC:1.1.1.95). SERA. ...
Number of sequences belonging to cluster in the Rhizobium_etli_CFN_42 sequence. ... Number of sequences belonging to cluster in the Rhizobium leguminosarum sequence. Sme. Number of sequences belonging to cluster ...
Rhizobium etli CFN 42, complete genome. probable glycosyltransferase protein. 6e-08. 58.9. ...
Rhizobium etli. 15573. RHE_PB00041. probable L-isoaspartyl protein carboxyl methyltransferase protein. ... Rhizobium sp.. 101917. NGR_b05770. L-isoaspartyl protein carboxyl methyltransferase protein. Rhodococcus erythropolis. 100887. ...
Rhizobium capsici sp. nov., isolated from root tumor of a green bell pepper (Capsicum annuum var. grossum) plant. Antonie Van ... Rhizobium straminoryzae sp. nov., isolated from the surface of rice straw. Int J Syst Evol Microbiol. 2014 Sep; 64(Pt 9):2962- ... Rhizobium induces DNA damage in Caenorhabditis elegans intestinal cells. Proc Natl Acad Sci U S A. 2019 02 26; 116(9):3784-3792 ... "Rhizobium" is a descriptor in the National Library of Medicines controlled vocabulary thesaurus, MeSH (Medical Subject ...
Crystal structures of the elusive Rhizobium etli l-asparaginase reveal a peculiar active site. Nat. Comm. 2021, 12, 6717 ...
... , Rhizobium tropici , Rhizobium , Simbiose/genética , Rhizobium tropici/genética , Rhizobium tropici/metabolismo , ... The phylogenetic tree of the 16S rRNA gene split the 13 strains into two large clades, seven in the R. etli and six in the R. ... CNPSo 4039T), and Rhizobium centroccidentale sp. nov. (CNPSo 4062T).. Assuntos. Phaseolus , Rhizobium , Brasil , Rhizobium/ ... CNPSo 3464T), Rhizobium atlanticum sp. nov. (CNPSo 3490T), Rhizobium aureum sp. nov. (CNPSo 3968T), Rhizobium pantanalense sp. ...
The physiological effects and metabolic alterations caused by the expression of Rhizobium etli pyruvate carboxylase in ...
Oxygen-dependent choline dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=betA PE=3 SV=1. 9. 614. 4.0E-27. ... Oxygen-dependent choline dehydrogenase OS=Rhizobium etli (strain CIAT 652) GN=betA PE=3 SV=1. 9. 614. 1.0E-26. ... Oxygen-dependent choline dehydrogenase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=betA PE=3 SV=1. 9. 614. 5.0E-23. ... Oxygen-dependent choline dehydrogenase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=betA PE=3 SV=1. 9. 614. 2.0E ...
Endophyte colonization of plants by biocontrol agent Rhizobium etli G12 in relation to Meloidogyne incognita infection. ...
Enhanced expression of Rhizobium etli cbb3 oxidase improves drought tolerance of common bean symbiotic nitrogen fixation. ... Rhizobium, water use efficiency, carbon, nitrogen, natural 15Nabundance, drought stress Abstract. The pioneer tree black locust ... Rhizobium-legume symbiosis and nitrogen fixation under severe conditions and in an arid climate. Microbiology and Molecular ... Diversity among Rhizobia effective with Robinia pseudoacacia L. Applied and Environmental Microbiology 58(7): 2137-2143. Bloom ...
3-isopropylmalate dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=leuB PE=3 SV=1. 48. 357. 1.0E-36. ... 3-isopropylmalate dehydrogenase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=leuB PE=3 SV=1. 48. 374. 7.0E-37. ... 3-isopropylmalate dehydrogenase OS=Rhizobium loti (strain MAFF303099) GN=leuB PE=3 SV=1. 48. 374. 3.0E-34. ... 3-isopropylmalate dehydrogenase OS=Rhizobium meliloti (strain 1021) GN=leuB PE=3 SV=1. 48. 370. 6.0E-36. ...
Rhizobium etli nitrogen fixation symbiosis. Plant Physiol 168, 273-291. [67]. Park MY, Wu G, Gonzalez-Sulser A, Vaucheret H, ...
Rhizobium etli has also been demonstrated to have a quorum-sensing-regulated swarming behavior (Daniels et al., 2006). ... in rhizobia was on a Sinorhizobium meliloti strain with a mutation in fadD, a gene involved in fatty acid metabolism (Soto et ... selleck chemicals llc The bacterial strains used in this study are listed in Table 1. Rhizobium leguminosarum strains ... Rhizobium leguminosarum bv. viciae is a symbiont of plant species belonging to the Tribe Vicieae, which includes the genera ...
... etli CIAT652 and in R. leguminosarum strains 3841, WSM1325 and WSM2304. In contrast, genomes of Rhizobium sp., Sinorhizobium, ... etli and R. leguminosarum strains. Furthermore, the synteny of the panCB, oxyR, katG genes in R. etli CFN42 is conserved in R. ... etli CFN42 is not unique to this strain A screening of the locat. Posted on June 28, 2020. by admin ... etli CFN42 is not unique to this strain. A screening of the location of panCB genes among members of the Rhizobiales, Selleck ...
EFFECT OF THE ASSOCIATION OF Rhizobium etli - Phaseolus vulgaris L. ON THE PLANT GROWTH AND THE PREFERENCE OF Bemisia tabaci ...
In Rhizobium etli, 89 candidate npcRNAs are detected by high-resolution tilling array, and 66 are classified as novel ones [23 ... Genome-wide detection of predicted non-coding RNAs in Rhizobium etli expressed during free-living and host-associated growth ...
CRYSTAL STRUCTURE OF PROBABLE SUGAR KINASE PROTEIN FROM RHIZOBIUM ETLI CFN 42 COMPLEXED WITH 4-BROMO-1H-PYRAZOLE , STRUCTURAL ... CRYSTAL STRUCTURE OF PROBABLE SUGAR KINASE PROTEIN FROM RHIZOBIUM ETLI CFN 42 COMPLEXED WITH N1-(2.3-DIHYDRO-1H-INDEN-5-YL) ... CRYSTAL STRUCTURE OF PROBABLE SUGAR KINASE PROTEIN FROM RHIZOBIUM ETLI CFN 42 COMPLEXED WITH N1-(2.3-DIHYDRO-1H-INDEN-5-YL) ... CRYSTAL STRUCTURE OF PROBABLE SUGAR KINASE PROTEIN FROM RHIZOBIUM ETLI CFN 42 COMPLEXED WITH 2-(2,5-DIMETHYL-1,3-THIAZOL-4-YL) ...

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